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MS008027 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS008027
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold284:225739..225948
RNA-Seq ExpressionMS008027
SyntenyMS008027
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAD1817824.1 unnamed protein product [Ananas comosus var. bracteatus]3.4e-0555.56Show/hide
Query:  PYPPYLETVPYPPGYQIPPFSMFDGRGCPKRHLSHFITACRDTTT
        PY  + + VP+PPGY  P F MFDG G P+ HL+HF  AC DT T
Subjt:  PYPPYLETVPYPPGYQIPPFSMFDGRGCPKRHLSHFITACRDTTT

CAN71468.1 hypothetical protein VITISV_038992 [Vitis vinifera]2.4e-0640.62Show/hide
Query:  YHSPYPPYLETVPYPPGYQIPPFSMFDGRGCPKRHLSHFITACRDTTTKWVFAIETISPFLRRS
        Y   YP Y++ VP+PP YQ P FS FDG G P  H++HF++ C DT       +      LR++
Subjt:  YHSPYPPYLETVPYPPGYQIPPFSMFDGRGCPKRHLSHFITACRDTTTKWVFAIETISPFLRRS

TVU51241.1 hypothetical protein EJB05_02652, partial [Eragrostis curvula]1.2e-0548.94Show/hide
Query:  YHSPYPPYLETVPYPPGYQIPPFSMFDGRGCPKRHLSHFITACRDTT
        Y  PYPP ++ VP+P  Y+ P FS F+G G P  H++HF+ AC+DT+
Subjt:  YHSPYPPYLETVPYPPGYQIPPFSMFDGRGCPKRHLSHFITACRDTT

XP_017181918.1 uncharacterized protein LOC108170915 [Malus domestica]3.4e-0552.08Show/hide
Query:  YHSPYPPYLETVPYPPGYQIPPFSMFDG-RGCPKRHLSHFITACRDTT
        Y  PYP + +TVP+P GYQ P F  FDG  G P+ HL+HF +AC +T+
Subjt:  YHSPYPPYLETVPYPPGYQIPPFSMFDG-RGCPKRHLSHFITACRDTT

XP_020181131.1 uncharacterized protein LOC109766757 [Aegilops tauschii subsp. strangulata]8.9e-0652.17Show/hide
Query:  YHSPYPPYLETVPYPPGYQIPPFSMFDGRGCPKRHLSHFITACRDT
        Y  PYPPY++ VP+P  Y+ P FS F+G G P  H++HF  AC+DT
Subjt:  YHSPYPPYLETVPYPPGYQIPPFSMFDGRGCPKRHLSHFITACRDT

TrEMBL top hitse value%identityAlignment
A0A3L6G245 Uncharacterized protein1.6e-0548.94Show/hide
Query:  YHSPYPPYLETVPYPPGYQIPPFSMFDGRGCPKRHLSHFITACRDTT
        Y  PYPP ++ VP+P  Y+ P FS F+G G P  H++HF+ AC+DT+
Subjt:  YHSPYPPYLETVPYPPGYQIPPFSMFDGRGCPKRHLSHFITACRDTT

A0A5J9WT05 Retrotrans_gag domain-containing protein (Fragment)5.7e-0648.94Show/hide
Query:  YHSPYPPYLETVPYPPGYQIPPFSMFDGRGCPKRHLSHFITACRDTT
        Y  PYPP ++ VP+P  Y+ P FS F+G G P  H++HF+ AC+DT+
Subjt:  YHSPYPPYLETVPYPPGYQIPPFSMFDGRGCPKRHLSHFITACRDTT

A0A6V7NHB6 Retrotrans_gag domain-containing protein1.6e-0555.56Show/hide
Query:  PYPPYLETVPYPPGYQIPPFSMFDGRGCPKRHLSHFITACRDTTT
        PY  + + VP+PPGY  P F MFDG G P+ HL+HF  AC DT T
Subjt:  PYPPYLETVPYPPGYQIPPFSMFDGRGCPKRHLSHFITACRDTTT

A5AMW3 Retrotrans_gag domain-containing protein1.1e-0640.62Show/hide
Query:  YHSPYPPYLETVPYPPGYQIPPFSMFDGRGCPKRHLSHFITACRDTTTKWVFAIETISPFLRRS
        Y   YP Y++ VP+PP YQ P FS FDG G P  H++HF++ C DT       +      LR++
Subjt:  YHSPYPPYLETVPYPPGYQIPPFSMFDGRGCPKRHLSHFITACRDTTTKWVFAIETISPFLRRS

B8B202 Retrotrans_gag domain-containing protein1.6e-0549.02Show/hide
Query:  TIQP-YHSPYPPYLETVPYPPGYQIPPFSMFDGRGCPKRHLSHFITACRDT
        T++P Y  PYPP ++ VP+P  Y+ P FS F+G G P  H++HF+ AC+DT
Subjt:  TIQP-YHSPYPPYLETVPYPPGYQIPPFSMFDGRGCPKRHLSHFITACRDT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ACAATCCAGCCTTATCACAGTCCATATCCTCCATATCTTGAAACCGTTCCTTATCCACCAGGGTACCAAATCCCACCATTTTCTATGTTTGATGGGAGAGGTTGC
CCTAAAAGACACTTATCTCATTTTATTACCGCTTGCCGGGACACTACCACAAAATGGGTCTTTGCCATTGAGACAATTTCCCCTTTCCTTCGACGGTCCTGCCTA
mRNA sequenceShow/hide mRNA sequence
ACAATCCAGCCTTATCACAGTCCATATCCTCCATATCTTGAAACCGTTCCTTATCCACCAGGGTACCAAATCCCACCATTTTCTATGTTTGATGGGAGAGGTTGC
CCTAAAAGACACTTATCTCATTTTATTACCGCTTGCCGGGACACTACCACAAAATGGGTCTTTGCCATTGAGACAATTTCCCCTTTCCTTCGACGGTCCTGCCTA
Protein sequenceShow/hide protein sequence
TIQPYHSPYPPYLETVPYPPGYQIPPFSMFDGRGCPKRHLSHFITACRDTTTKWVFAIETISPFLRRSCL