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MS008030 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS008030
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRetrotransposon protein
Genome locationscaffold284:296365..296505
RNA-Seq ExpressionMS008030
SyntenyMS008030
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043564.1 retrotransposon protein [Cucumis melo var. makuwa]3.3e-0461.11Show/hide
Query:  HTWMYNEDAKLVECLMRSVEDGGWRSNNDTFMLGFM
        HTW   E+AKLVECL+  V  GGWRSNN TF  G++
Subjt:  HTWMYNEDAKLVECLMRSVEDGGWRSNNDTFMLGFM
KAA0066605.1 retrotransposon protein [Cucumis melo var. makuwa]3.3e-0461.11Show/hide
Query:  HTWMYNEDAKLVECLMRSVEDGGWRSNNDTFMLGFM
        HTW   E+AKLVECL+  V  GGWRSNN TF  G++
Subjt:  HTWMYNEDAKLVECLMRSVEDGGWRSNNDTFMLGFM
TYK19779.1 retrotransposon protein [Cucumis melo var. makuwa]5.1e-0563.89Show/hide
Query:  HTWMYNEDAKLVECLMRSVEDGGWRSNNDTFMLGFM
        HTW   E+AKLVECL+  V  GGWRSNN TF LG++
Subjt:  HTWMYNEDAKLVECLMRSVEDGGWRSNNDTFMLGFM
TrEMBL top hitse value%identityAlignment
A0A5A7TJS2 Retrotransposon protein1.6e-0461.11Show/hide
Query:  HTWMYNEDAKLVECLMRSVEDGGWRSNNDTFMLGFM
        HTW   E+AKLVECL+  V  GGWRSNN TF  G++
Subjt:  HTWMYNEDAKLVECLMRSVEDGGWRSNNDTFMLGFM
A0A5A7TS39 Retrotransposon protein6.1e-0456.41Show/hide
Query:  LKTHTWMYNEDAKLVECLMRSVEDGGWRSNNDTFMLGFM
        L  HTW   E+A LVECL+  V  GGWRSNN TF  G++
Subjt:  LKTHTWMYNEDAKLVECLMRSVEDGGWRSNNDTFMLGFM
A0A5A7U6Z3 Retrotransposon protein6.1e-0456.41Show/hide
Query:  LKTHTWMYNEDAKLVECLMRSVEDGGWRSNNDTFMLGFM
        L  HTW   E+A LVECL+  V  GGWRSNN TF  G++
Subjt:  LKTHTWMYNEDAKLVECLMRSVEDGGWRSNNDTFMLGFM
A0A5D3CQS4 Retrotransposon protein1.6e-0461.11Show/hide
Query:  HTWMYNEDAKLVECLMRSVEDGGWRSNNDTFMLGFM
        HTW   E+AKLVECL+  V  GGWRSNN TF  G++
Subjt:  HTWMYNEDAKLVECLMRSVEDGGWRSNNDTFMLGFM
A0A5D3D8J6 Retrotransposon protein2.5e-0563.89Show/hide
Query:  HTWMYNEDAKLVECLMRSVEDGGWRSNNDTFMLGFM
        HTW   E+AKLVECL+  V  GGWRSNN TF LG++
Subjt:  HTWMYNEDAKLVECLMRSVEDGGWRSNNDTFMLGFM
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTAGTATGGCAAGTCGTGAGAAATCTAAAAACACACACTTGGATGTATAACGAGGATGCAAAATTAGTAGAGTGTCTCATGAGATCAGTAGAAGATGGTGGATGG
AGATCAAATAATGACACATTCATGTTGGGATTTATG
mRNA sequenceShow/hide mRNA sequence
GTAGTATGGCAAGTCGTGAGAAATCTAAAAACACACACTTGGATGTATAACGAGGATGCAAAATTAGTAGAGTGTCTCATGAGATCAGTAGAAGATGGTGGATGG
AGATCAAATAATGACACATTCATGTTGGGATTTATG
Protein sequenceShow/hide protein sequence
VVWQVVRNLKTHTWMYNEDAKLVECLMRSVEDGGWRSNNDTFMLGFM