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MS008181 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS008181
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold45:8832..9037
RNA-Seq ExpressionMS008181
SyntenyMS008181
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.3e-0541.1Show/hide
Query:  IFSVKSIKSKLVDPSS-------ATFAKLWSLYLPKKCKFFLLCLFHRGINTY-KMQIRFPSPNISPNWCVLC
        IF   SIK  L + S+       + +  LW +  PKKCKFF+  L H  INT  ++Q R P+  +SPNWC +C
Subjt:  IFSVKSIKSKLVDPSS-------ATFAKLWSLYLPKKCKFFLLCLFHRGINTY-KMQIRFPSPNISPNWCVLC

KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.3e-0541.1Show/hide
Query:  IFSVKSIKSKLVDPSS-------ATFAKLWSLYLPKKCKFFLLCLFHRGINTY-KMQIRFPSPNISPNWCVLC
        IF   SIK  L + S+       + +  LW +  PKKCKFF+  L H  INT  ++Q R P+  +SPNWC +C
Subjt:  IFSVKSIKSKLVDPSS-------ATFAKLWSLYLPKKCKFFLLCLFHRGINTY-KMQIRFPSPNISPNWCVLC

TYJ98385.1 retrotransposon protein, putative, unclassified [Cucumis melo var. makuwa]1.5e-0538.16Show/hide
Query:  GIFSVKSIKSKL--------VDPSSATFAKLWSLYLPKKCKFFLLCLFHRGIN-TYKMQIRFPSPNISPNWCVLCK
        G F++ S+K  +        ++  S  F  LW   + KKCKFFL  +FH  +N T  +Q R+P+  ++PNWCV CK
Subjt:  GIFSVKSIKSKL--------VDPSSATFAKLWSLYLPKKCKFFLLCLFHRGIN-TYKMQIRFPSPNISPNWCVLCK

TYK10356.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.5e-0538.16Show/hide
Query:  GIFSVKSIKSKLVDPSSA--------TFAKLWSLYLPKKCKFFLLCLFHRGINTY-KMQIRFPSPNISPNWCVLCK
        G +SV S+K  L+ P           TF  LW   +PKKCKFF+  L +  +NT  ++  R P+    P+WCV+CK
Subjt:  GIFSVKSIKSKLVDPSSA--------TFAKLWSLYLPKKCKFFLLCLFHRGINTY-KMQIRFPSPNISPNWCVLCK

XP_031744692.1 uncharacterized protein LOC116405125 [Cucumis sativus]3.3e-0539.47Show/hide
Query:  GIFSVKSIK--------SKLVDPSSATFAKLWSLYLPKKCKFFLLCLFHRGINTYKM-QIRFPSPNISPNWCVLCK
        G F+V SIK         +  +     +  LW   +PK+CKFF+  L H  INT  M Q R P+ N+ P+WC+LCK
Subjt:  GIFSVKSIK--------SKLVDPSSATFAKLWSLYLPKKCKFFLLCLFHRGINTYKM-QIRFPSPNISPNWCVLCK

TrEMBL top hitse value%identityAlignment
A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein1.6e-0541.1Show/hide
Query:  IFSVKSIKSKLVDPSS-------ATFAKLWSLYLPKKCKFFLLCLFHRGINTY-KMQIRFPSPNISPNWCVLC
        IF   SIK  L + S+       + +  LW +  PKKCKFF+  L H  INT  ++Q R P+  +SPNWC +C
Subjt:  IFSVKSIKSKLVDPSS-------ATFAKLWSLYLPKKCKFFLLCLFHRGINTY-KMQIRFPSPNISPNWCVLC

A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein1.6e-0541.1Show/hide
Query:  IFSVKSIKSKLVDPSS-------ATFAKLWSLYLPKKCKFFLLCLFHRGINTY-KMQIRFPSPNISPNWCVLC
        IF   SIK  L + S+       + +  LW +  PKKCKFF+  L H  INT  ++Q R P+  +SPNWC +C
Subjt:  IFSVKSIKSKLVDPSS-------ATFAKLWSLYLPKKCKFFLLCLFHRGINTY-KMQIRFPSPNISPNWCVLC

A0A5A7UBH7 Reverse transcriptase3.5e-0545.45Show/hide
Query:  DPSSATFAKLWSLYLPKKCKFFLLCLFHRGINTYK-MQIRFPSPNISPNWCVLCK
        DP +     +W   +P K KFF+ CL  R INT + +Q R P+  + PNWCVLCK
Subjt:  DPSSATFAKLWSLYLPKKCKFFLLCLFHRGINTYK-MQIRFPSPNISPNWCVLCK

A0A5D3BJ44 Retrotransposon protein, putative, unclassified7.1e-0638.16Show/hide
Query:  GIFSVKSIKSKL--------VDPSSATFAKLWSLYLPKKCKFFLLCLFHRGIN-TYKMQIRFPSPNISPNWCVLCK
        G F++ S+K  +        ++  S  F  LW   + KKCKFFL  +FH  +N T  +Q R+P+  ++PNWCV CK
Subjt:  GIFSVKSIKSKL--------VDPSSATFAKLWSLYLPKKCKFFLLCLFHRGIN-TYKMQIRFPSPNISPNWCVLCK

A0A5D3CJ08 LINE-1 retrotransposable element ORF2 protein1.2e-0538.16Show/hide
Query:  GIFSVKSIKSKLVDPSSA--------TFAKLWSLYLPKKCKFFLLCLFHRGINTY-KMQIRFPSPNISPNWCVLCK
        G +SV S+K  L+ P           TF  LW   +PKKCKFF+  L +  +NT  ++  R P+    P+WCV+CK
Subjt:  GIFSVKSIKSKLVDPSSA--------TFAKLWSLYLPKKCKFFLLCLFHRGINTY-KMQIRFPSPNISPNWCVLCK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGTATTTTTTCAGTAAAGTCCATAAAATCTAAGCTTGTTGACCCTTCCTCTGCTACCTTTGCTAAGTTGTGGAGTTTATACCTACCTAAAAAATGCAAGTTTTTTCTATT
ATGCCTCTTCCATCGTGGTATTAACACATATAAGATGCAGATCAGATTTCCATCTCCGAATATCAGTCCAAATTGGTGCGTTTTATGCAAA
mRNA sequenceShow/hide mRNA sequence
GGTATTTTTTCAGTAAAGTCCATAAAATCTAAGCTTGTTGACCCTTCCTCTGCTACCTTTGCTAAGTTGTGGAGTTTATACCTACCTAAAAAATGCAAGTTTTTTCTATT
ATGCCTCTTCCATCGTGGTATTAACACATATAAGATGCAGATCAGATTTCCATCTCCGAATATCAGTCCAAATTGGTGCGTTTTATGCAAA
Protein sequenceShow/hide protein sequence
GIFSVKSIKSKLVDPSSATFAKLWSLYLPKKCKFFLLCLFHRGINTYKMQIRFPSPNISPNWCVLCK