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MS008189 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS008189
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionF-box protein
Genome locationscaffold45:75838..76113
RNA-Seq ExpressionMS008189
SyntenyMS008189
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570927.1 F-box protein, partial [Cucurbita argyrosperma subsp. sororia]1.3e-2366.67Show/hide
Query:  IIFHCNYSIR-HIYFVDFPTFTQRQQPVKRIFTTFSASMPKYDVNVVGSFHGLLFLSDFLYNDKLFIYIPFIRDYLELPSTNEFFDLDVVCGI
        +IFHC+Y IR H+ FVDFP F Q++QPVKRI T FSA+MP+YD  VVGS +G L LSD LYN+KLFIY PF R++LELP T EF + DVVCGI
Subjt:  IIFHCNYSIR-HIYFVDFPTFTQRQQPVKRIFTTFSASMPKYDVNVVGSFHGLLFLSDFLYNDKLFIYIPFIRDYLELPSTNEFFDLDVVCGI
XP_022140713.1 F-box protein At3g07870 [Momordica charantia]1.2e-2669.89Show/hide
Query:  IIFHCNYSIR-HIYFVDFPTFTQRQQPVKRIFTTFSASMPKYDVNVVGSFHGLLFLSDFLYNDKLFIYIPFIRDYLELPSTNEFFDLDVVCGI
        +IFHC+Y IR H+YFVDFP F   ++PVKR+FT FSA+MP+YD  VVGS +GLL LSD LYNDKLFIY PF RDYLELP T EF + DVVCGI
Subjt:  IIFHCNYSIR-HIYFVDFPTFTQRQQPVKRIFTTFSASMPKYDVNVVGSFHGLLFLSDFLYNDKLFIYIPFIRDYLELPSTNEFFDLDVVCGI
XP_022944698.1 F-box protein At3g07870-like [Cucurbita moschata]3.3e-2467.74Show/hide
Query:  IIFHCNYSIR-HIYFVDFPTFTQRQQPVKRIFTTFSASMPKYDVNVVGSFHGLLFLSDFLYNDKLFIYIPFIRDYLELPSTNEFFDLDVVCGI
        +IFHC+Y IR H+ FVDFP F Q++QPVKRI T FSA+MP+YD  VVGS +G L LSD LYN+KLFIY PF R+YLELP T EF + DVVCGI
Subjt:  IIFHCNYSIR-HIYFVDFPTFTQRQQPVKRIFTTFSASMPKYDVNVVGSFHGLLFLSDFLYNDKLFIYIPFIRDYLELPSTNEFFDLDVVCGI
XP_022985706.1 F-box protein At3g07870-like [Cucurbita maxima]1.1e-2468.82Show/hide
Query:  IIFHCNYSIR-HIYFVDFPTFTQRQQPVKRIFTTFSASMPKYDVNVVGSFHGLLFLSDFLYNDKLFIYIPFIRDYLELPSTNEFFDLDVVCGI
        +IFHC+Y IR H+ FVDFP F Q++QPVKRI T FSA+MP+YD  VVGS +G L LSD LYN+KLFIY PF RDYLELP T EF + DVVCGI
Subjt:  IIFHCNYSIR-HIYFVDFPTFTQRQQPVKRIFTTFSASMPKYDVNVVGSFHGLLFLSDFLYNDKLFIYIPFIRDYLELPSTNEFFDLDVVCGI
XP_023511779.1 F-box protein At3g07870-like [Cucurbita pepo subsp. pepo]3.3e-2467.74Show/hide
Query:  IIFHCNYSIR-HIYFVDFPTFTQRQQPVKRIFTTFSASMPKYDVNVVGSFHGLLFLSDFLYNDKLFIYIPFIRDYLELPSTNEFFDLDVVCGI
        +IFHC+Y IR H+ FVDFP F Q++QPVKRI T FSA+MP+YD  VVGS +G L LSD LYN+KLFIY PF R+YLELP T EF + DVVCGI
Subjt:  IIFHCNYSIR-HIYFVDFPTFTQRQQPVKRIFTTFSASMPKYDVNVVGSFHGLLFLSDFLYNDKLFIYIPFIRDYLELPSTNEFFDLDVVCGI
TrEMBL top hitse value%identityAlignment
A0A6J1CIM5 F-box protein At3g078705.9e-2769.89Show/hide
Query:  IIFHCNYSIR-HIYFVDFPTFTQRQQPVKRIFTTFSASMPKYDVNVVGSFHGLLFLSDFLYNDKLFIYIPFIRDYLELPSTNEFFDLDVVCGI
        +IFHC+Y IR H+YFVDFP F   ++PVKR+FT FSA+MP+YD  VVGS +GLL LSD LYNDKLFIY PF RDYLELP T EF + DVVCGI
Subjt:  IIFHCNYSIR-HIYFVDFPTFTQRQQPVKRIFTTFSASMPKYDVNVVGSFHGLLFLSDFLYNDKLFIYIPFIRDYLELPSTNEFFDLDVVCGI
A0A6J1FYB5 F-box protein At3g07870-like1.6e-2467.74Show/hide
Query:  IIFHCNYSIR-HIYFVDFPTFTQRQQPVKRIFTTFSASMPKYDVNVVGSFHGLLFLSDFLYNDKLFIYIPFIRDYLELPSTNEFFDLDVVCGI
        +IFHC+Y IR H+ FVDFP F Q++QPVKRI T FSA+MP+YD  VVGS +G L LSD LYN+KLFIY PF R+YLELP T EF + DVVCGI
Subjt:  IIFHCNYSIR-HIYFVDFPTFTQRQQPVKRIFTTFSASMPKYDVNVVGSFHGLLFLSDFLYNDKLFIYIPFIRDYLELPSTNEFFDLDVVCGI
A0A6J1G896 F-box protein At3g07870-like8.7e-2364.52Show/hide
Query:  IIFHCNYSIRH-IYFVDFPTFTQRQQPVKRIFTTFSASMPKYDVNVVGSFHGLLFLSDFLYNDKLFIYIPFIRDYLELPSTNEFFDLDVVCGI
        +IFHC+Y IR+ +YFVD P F   +  VKRIFT FSA+M +YD  VVGS HG L LSD LYNDKLFIY PF RDYL+LP T EF + DVVCG+
Subjt:  IIFHCNYSIRH-IYFVDFPTFTQRQQPVKRIFTTFSASMPKYDVNVVGSFHGLLFLSDFLYNDKLFIYIPFIRDYLELPSTNEFFDLDVVCGI
A0A6J1I5M3 F-box protein At3g078702.3e-2365.59Show/hide
Query:  IIFHCNYSIRH-IYFVDFPTFTQRQQPVKRIFTTFSASMPKYDVNVVGSFHGLLFLSDFLYNDKLFIYIPFIRDYLELPSTNEFFDLDVVCGI
        +IFHC+Y IR+ +YFVD P F   +  VKRIFT FSA+M +YD  VVGS HG L LSD LYNDKLFIY PF RDYLELP T EF + DVVCG+
Subjt:  IIFHCNYSIRH-IYFVDFPTFTQRQQPVKRIFTTFSASMPKYDVNVVGSFHGLLFLSDFLYNDKLFIYIPFIRDYLELPSTNEFFDLDVVCGI
A0A6J1J905 F-box protein At3g07870-like5.5e-2568.82Show/hide
Query:  IIFHCNYSIR-HIYFVDFPTFTQRQQPVKRIFTTFSASMPKYDVNVVGSFHGLLFLSDFLYNDKLFIYIPFIRDYLELPSTNEFFDLDVVCGI
        +IFHC+Y IR H+ FVDFP F Q++QPVKRI T FSA+MP+YD  VVGS +G L LSD LYN+KLFIY PF RDYLELP T EF + DVVCGI
Subjt:  IIFHCNYSIR-HIYFVDFPTFTQRQQPVKRIFTTFSASMPKYDVNVVGSFHGLLFLSDFLYNDKLFIYIPFIRDYLELPSTNEFFDLDVVCGI
SwissProt top hitse value%identityAlignment
Q9SFC7 F-box protein At3g078704.8e-1040.86Show/hide
Query:  IIFHCNYSIRH-IYFVDFPTFTQRQQPVKRIFTTFSASMPKYDVNVVGSFHGLLFLSDFLYNDKLFIYIPFIRDYLELPS-TNEFFDLDVVCG
        ++ HC+  IR+ ++F+D  +  +++   K+    F++SMP++D  VVGS +GLL LSD LYND L++Y PF  + LELP  +N++ D ++V G
Subjt:  IIFHCNYSIRH-IYFVDFPTFTQRQQPVKRIFTTFSASMPKYDVNVVGSFHGLLFLSDFLYNDKLFIYIPFIRDYLELPS-TNEFFDLDVVCG
Arabidopsis top hitse value%identityAlignment
AT3G07870.1 F-box and associated interaction domains-containing protein3.4e-1140.86Show/hide
Query:  IIFHCNYSIRH-IYFVDFPTFTQRQQPVKRIFTTFSASMPKYDVNVVGSFHGLLFLSDFLYNDKLFIYIPFIRDYLELPS-TNEFFDLDVVCG
        ++ HC+  IR+ ++F+D  +  +++   K+    F++SMP++D  VVGS +GLL LSD LYND L++Y PF  + LELP  +N++ D ++V G
Subjt:  IIFHCNYSIRH-IYFVDFPTFTQRQQPVKRIFTTFSASMPKYDVNVVGSFHGLLFLSDFLYNDKLFIYIPFIRDYLELPS-TNEFFDLDVVCG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATAATCTTCCACTGCAATTACTCAATCCGACACATATATTTCGTGGATTTTCCTACCTTCACACAACGTCAACAGCCCGTCAAGAGAATTTTCACTACTTTTTCTGCTTC
AATGCCAAAGTACGATGTCAATGTGGTAGGTTCTTTCCATGGGTTGCTATTTTTATCTGATTTTCTTTACAATGATAAGCTCTTTATATACATCCCATTTATAAGAGACT
ACCTGGAGTTGCCTAGCACCAATGAATTTTTTGACCTTGATGTGGTGTGTGGGATT
mRNA sequenceShow/hide mRNA sequence
ATAATCTTCCACTGCAATTACTCAATCCGACACATATATTTCGTGGATTTTCCTACCTTCACACAACGTCAACAGCCCGTCAAGAGAATTTTCACTACTTTTTCTGCTTC
AATGCCAAAGTACGATGTCAATGTGGTAGGTTCTTTCCATGGGTTGCTATTTTTATCTGATTTTCTTTACAATGATAAGCTCTTTATATACATCCCATTTATAAGAGACT
ACCTGGAGTTGCCTAGCACCAATGAATTTTTTGACCTTGATGTGGTGTGTGGGATT
Protein sequenceShow/hide protein sequence
IIFHCNYSIRHIYFVDFPTFTQRQQPVKRIFTTFSASMPKYDVNVVGSFHGLLFLSDFLYNDKLFIYIPFIRDYLELPSTNEFFDLDVVCGI