; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS008205 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS008205
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionSWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1
Genome locationscaffold45:183793..184870
RNA-Seq ExpressionMS008205
SyntenyMS008205
Gene Ontology termsGO:0006281 - DNA repair (biological process)
GO:0031297 - replication fork processing (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005524 - ATP binding (molecular function)
GO:0036310 - annealing helicase activity (molecular function)
InterPro domainsIPR001650 - Helicase, C-terminal
IPR027417 - P-loop containing nucleoside triphosphate hydrolase
IPR030101 - SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022137966.1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 isoform X1 [Momordica charantia]7.5e-6299.22Show/hide
Query:  LSIRAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKLENLGQMLDGEENTLEVAVKQQPSISTSSSPN
        LSIRAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKLENLGQMLDGEENTLEVAVKQQPS STSSSPN
Subjt:  LSIRAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKLENLGQMLDGEENTLEVAVKQQPSISTSSSPN

Query:  SKQKTLDSFIKRCNTVSSDTQSKLKLPRH
        SKQKTLDSFIKRCNTVSSDTQSKLKLPRH
Subjt:  SKQKTLDSFIKRCNTVSSDTQSKLKLPRH

XP_022137967.1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 isoform X2 [Momordica charantia]7.5e-6299.22Show/hide
Query:  LSIRAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKLENLGQMLDGEENTLEVAVKQQPSISTSSSPN
        LSIRAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKLENLGQMLDGEENTLEVAVKQQPS STSSSPN
Subjt:  LSIRAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKLENLGQMLDGEENTLEVAVKQQPSISTSSSPN

Query:  SKQKTLDSFIKRCNTVSSDTQSKLKLPRH
        SKQKTLDSFIKRCNTVSSDTQSKLKLPRH
Subjt:  SKQKTLDSFIKRCNTVSSDTQSKLKLPRH

XP_023539951.1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 isoform X1 [Cucurbita pepo subsp. pepo]1.5e-5794.57Show/hide
Query:  LSIRAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKLENLGQMLDGEENTLEVAVKQQPSISTSSSPN
        LSIRA GVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKLENLGQMLDGEENTLEVAVKQQP  ++SSSPN
Subjt:  LSIRAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKLENLGQMLDGEENTLEVAVKQQPSISTSSSPN

Query:  SKQKTLDSFIKRCNTVSSDTQSKLKLPRH
        SKQKTLDSFIKRCN VS+DTQSKLKLPRH
Subjt:  SKQKTLDSFIKRCNTVSSDTQSKLKLPRH

XP_023539954.1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 isoform X3 [Cucurbita pepo subsp. pepo]1.5e-5794.57Show/hide
Query:  LSIRAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKLENLGQMLDGEENTLEVAVKQQPSISTSSSPN
        LSIRA GVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKLENLGQMLDGEENTLEVAVKQQP  ++SSSPN
Subjt:  LSIRAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKLENLGQMLDGEENTLEVAVKQQPSISTSSSPN

Query:  SKQKTLDSFIKRCNTVSSDTQSKLKLPRH
        SKQKTLDSFIKRCN VS+DTQSKLKLPRH
Subjt:  SKQKTLDSFIKRCNTVSSDTQSKLKLPRH

XP_023539957.1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 isoform X6 [Cucurbita pepo subsp. pepo]1.5e-5794.57Show/hide
Query:  LSIRAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKLENLGQMLDGEENTLEVAVKQQPSISTSSSPN
        LSIRA GVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKLENLGQMLDGEENTLEVAVKQQP  ++SSSPN
Subjt:  LSIRAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKLENLGQMLDGEENTLEVAVKQQPSISTSSSPN

Query:  SKQKTLDSFIKRCNTVSSDTQSKLKLPRH
        SKQKTLDSFIKRCN VS+DTQSKLKLPRH
Subjt:  SKQKTLDSFIKRCNTVSSDTQSKLKLPRH

TrEMBL top hitse value%identityAlignment
A0A0A0L604 Helicase C-terminal domain-containing protein3.5e-5793.8Show/hide
Query:  LSIRAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKLENLGQMLDGEENTLEVAVKQQPSISTSSSPN
        LSI+AGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKLENLGQMLDGEENTLEVAVKQQP   TSSSPN
Subjt:  LSIRAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKLENLGQMLDGEENTLEVAVKQQPSISTSSSPN

Query:  SKQKTLDSFIKRCNTVSSDTQSKLKLPRH
        SKQKTLDSFIKRCN  S DTQSKLKLP+H
Subjt:  SKQKTLDSFIKRCNTVSSDTQSKLKLPRH

A0A6J1C8A6 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 isoform X13.6e-6299.22Show/hide
Query:  LSIRAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKLENLGQMLDGEENTLEVAVKQQPSISTSSSPN
        LSIRAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKLENLGQMLDGEENTLEVAVKQQPS STSSSPN
Subjt:  LSIRAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKLENLGQMLDGEENTLEVAVKQQPSISTSSSPN

Query:  SKQKTLDSFIKRCNTVSSDTQSKLKLPRH
        SKQKTLDSFIKRCNTVSSDTQSKLKLPRH
Subjt:  SKQKTLDSFIKRCNTVSSDTQSKLKLPRH

A0A6J1C9R5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 isoform X23.6e-6299.22Show/hide
Query:  LSIRAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKLENLGQMLDGEENTLEVAVKQQPSISTSSSPN
        LSIRAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKLENLGQMLDGEENTLEVAVKQQPS STSSSPN
Subjt:  LSIRAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKLENLGQMLDGEENTLEVAVKQQPSISTSSSPN

Query:  SKQKTLDSFIKRCNTVSSDTQSKLKLPRH
        SKQKTLDSFIKRCNTVSSDTQSKLKLPRH
Subjt:  SKQKTLDSFIKRCNTVSSDTQSKLKLPRH

A0A6J1GI27 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 12.7e-5793.8Show/hide
Query:  LSIRAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKLENLGQMLDGEENTLEVAVKQQPSISTSSSPN
        LSIRA GVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKLENLGQMLDGEENTLEVAVKQQP  ++SSSPN
Subjt:  LSIRAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKLENLGQMLDGEENTLEVAVKQQPSISTSSSPN

Query:  SKQKTLDSFIKRCNTVSSDTQSKLKLPRH
        SKQKTLDSFIKRC+ VS+DTQSKLKLPRH
Subjt:  SKQKTLDSFIKRCNTVSSDTQSKLKLPRH

A0A6J1I7S1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 isoform X64.6e-5793.02Show/hide
Query:  LSIRAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKLENLGQMLDGEENTLEVAVKQQPSISTSSSPN
        LSIRA GVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKLENLGQMLDGEENTLEVAVKQQP  ++SSSPN
Subjt:  LSIRAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKLENLGQMLDGEENTLEVAVKQQPSISTSSSPN

Query:  SKQKTLDSFIKRCNTVSSDTQSKLKLPRH
        SKQKTLDSFIKRC+ VS+DTQSK+KLPRH
Subjt:  SKQKTLDSFIKRCNTVSSDTQSKLKLPRH

SwissProt top hitse value%identityAlignment
E1BB03 DNA annealing helicase and endonuclease ZRANB31.9e-2057.14Show/hide
Query:  LSIRAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKLENLGQMLDGEENTLE
        LSI+A G GLT TAA+ V+FAEL W PG + QAEDRAHRIGQ SSVNIHYL+AN T+D ++W ++  K +  G  L+G +  L+
Subjt:  LSIRAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKLENLGQMLDGEENTLE

Q0P4U8 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 11.9e-2059.52Show/hide
Query:  LSIRAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKLENLGQMLDGEENTLE
        LSI A  +GLTL++A  V+FAEL W PG LIQAEDR HRIGQ SSVNIHYL+A  T DD +W ++Q K++ LGQ    E N  E
Subjt:  LSIRAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKLENLGQMLDGEENTLE

Q498E7 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 11.9e-2059.52Show/hide
Query:  LSIRAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKLENLGQMLDGEENTLE
        LSI A  +GLTL++A  V+FAEL W PG LIQAEDR HRIGQ SSVNIHYL+A  T DD +W ++Q K++ LGQ    E N  E
Subjt:  LSIRAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKLENLGQMLDGEENTLE

Q5FWF4 DNA annealing helicase and endonuclease ZRANB31.5e-2057.14Show/hide
Query:  LSIRAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKLENLGQMLDGEENTLE
        LSI+A G GLT TAAS V+FAEL W PG + QAEDRAHRIGQ SSVNIHYL+AN T+D ++W ++  K +  G  L+G +  ++
Subjt:  LSIRAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKLENLGQMLDGEENTLE

Q6NZP1 DNA annealing helicase and endonuclease ZRANB38.7e-2158.33Show/hide
Query:  LSIRAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKLENLGQMLDGEENTLE
        LSI+A G GLT TAAS V+FAEL W PG + QAEDRAHRIGQ SSVNIHYL+AN T+D ++W ++  K +  G  L+G +  L+
Subjt:  LSIRAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKLENLGQMLDGEENTLE

Arabidopsis top hitse value%identityAlignment
AT1G48310.1 chromatin remodeling factor181.4e-4573.08Show/hide
Query:  LSIRAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKLENLGQMLDGEENTLEVAVKQQPSISTS--SS
        LSIRA GVG+TLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKL+NLGQMLDG+EN L+VA     S  T   +S
Subjt:  LSIRAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKLENLGQMLDGEENTLEVAVKQQPSISTS--SS

Query:  PNSKQKTLDSFIKRCNTVSSDTQSKLKLPR
        P +KQ+TL+ F+KRC  +  DT+    +P+
Subjt:  PNSKQKTLDSFIKRCNTVSSDTQSKLKLPR

AT2G02090.1 SNF2 domain-containing protein / helicase domain-containing protein6.4e-1149.28Show/hide
Query:  LSIRAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKL
        LS RAGG GL LT A TVI  ++ + P    QAEDR HRIGQ   V I  L+   TVD+ I+++ + KL
Subjt:  LSIRAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKL

AT3G57300.1 INO80 ortholog2.2e-1152.46Show/hide
Query:  LSIRAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDII
        LS RAGG+G+ LTAA TVIF E  W P   +QA DRAHR+GQ   V ++ L+  +TV++ I
Subjt:  LSIRAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDII

AT3G57300.2 INO80 ortholog2.2e-1152.46Show/hide
Query:  LSIRAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDII
        LS RAGG+G+ LTAA TVIF E  W P   +QA DRAHR+GQ   V ++ L+  +TV++ I
Subjt:  LSIRAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDII

AT5G07810.1 SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein3.3e-1537.82Show/hide
Query:  LSIRAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKLENLGQMLDGEENTLEVAVKQQPSISTSSSPN
        + + AGGVGL  +AA  V+F EL  TP  L+QAEDRAHR GQ S+VN++   A DT+D+  W  +  KL  +    DG+ +          SI   +  +
Subjt:  LSIRAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKLENLGQMLDGEENTLEVAVKQQPSISTSSSPN

Query:  SKQKTLDSFIKRCNTVSSD
        S+++ L+      NTV +D
Subjt:  SKQKTLDSFIKRCNTVSSD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ACGCTTCCACAGTTATCTATTAGAGCTGGAGGTGTCGGGCTAACATTAACCGCTGCAAGCACGGTTATTTTTGCCGAGCTTTCTTGGACTCCAGGTGATCTGATTCAAGC
TGAAGATCGTGCCCATAGAATTGGACAGGTTTCTTCCGTTAACATACATTATCTACTGGCGAACGATACAGTCGACGACATTATATGGGATGTTGTTCAGAGCAAGTTAG
AAAATTTAGGACAGATGCTGGATGGGGAAGAGAATACATTGGAAGTGGCAGTGAAGCAGCAGCCCAGTATAAGTACAAGTAGCAGTCCAAATTCAAAGCAAAAAACTCTA
GACTCTTTCATAAAGCGTTGCAACACTGTAAGTTCTGATACCCAATCCAAACTTAAACTTCCTAGGCAC
mRNA sequenceShow/hide mRNA sequence
ACGCTTCCACAGTTATCTATTAGAGCTGGAGGTGTCGGGCTAACATTAACCGCTGCAAGCACGGTTATTTTTGCCGAGCTTTCTTGGACTCCAGGTGATCTGATTCAAGC
TGAAGATCGTGCCCATAGAATTGGACAGGTTTCTTCCGTTAACATACATTATCTACTGGCGAACGATACAGTCGACGACATTATATGGGATGTTGTTCAGAGCAAGTTAG
AAAATTTAGGACAGATGCTGGATGGGGAAGAGAATACATTGGAAGTGGCAGTGAAGCAGCAGCCCAGTATAAGTACAAGTAGCAGTCCAAATTCAAAGCAAAAAACTCTA
GACTCTTTCATAAAGCGTTGCAACACTGTAAGTTCTGATACCCAATCCAAACTTAAACTTCCTAGGCAC
Protein sequenceShow/hide protein sequence
TLPQLSIRAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKLENLGQMLDGEENTLEVAVKQQPSISTSSSPNSKQKTL
DSFIKRCNTVSSDTQSKLKLPRH