CuGenDBv2

Gene ID	MS008208
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	DNA binding protein
Genome location	scaffold45:203439..204140
RNA-Seq Expression	MS008208
Synteny	MS008208
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0052154.1 DNA binding protein [Cucumis melo var. makuwa]

1.6e-78

72.49

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Query:  MNRPHRNLLLHPNSHCQECGTSQSHCWILHQVRLKASFRRLCTNCVLKNNLSGFCPVCFDVYDDSSPPPSHQRVMCFRCPSISHFSCVSVHFSSTFLCSL
        MNR   +L  +  SHCQECG SQS CWILH VR KA+FRRLCTNCVLK+NLS FCP+CFDVY+DS+PPPSH RVMC+RCPSISH SCVS  FSSTFLC L
Subjt:  MNRPHRNLLLHPNSHCQECGTSQSHCWILHQVRLKASFRRLCTNCVLKNNLSGFCPVCFDVYDDSSPPPSHQRVMCFRCPSISHFSCVSVHFSSTFLCSL

Query:  CSDPRFTFFDGFHS-AALSQSGSAAVLADNRVVDCKSARAIVAAARVAAQSMRRAAADARAAAETKIKNAAFAKKQATLALERLAFLVLQEKDRNGCVKS
        CSDPRF FFDGF S  +L QS S       + VD KS +AIVAAARV+AQSMRRAA DARA AE KIKNAAFAKKQATLALE+LA+LVLQEKD+NG  KS
Subjt:  CSDPRFTFFDGFHS-AALSQSGSAAVLADNRVVDCKSARAIVAAARVAAQSMRRAAADARAAAETKIKNAAFAKKQATLALERLAFLVLQEKDRNGCVKS

Query:  NNGDAVAGERTVEES--KLQDKEVTAILE
         NGDAVA ER VEE   KL +KEVTAI +
Subjt:  NNGDAVAGERTVEES--KLQDKEVTAILE

KAE8650412.1 hypothetical protein Csa_010702 [Cucumis sativus]

3.5e-78

72.61

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Query:  MNRPHRN-LLLHPNSHCQECGTSQSHCWILHQVRLKASFRRLCTNCVLKNNLSGFCPVCFDVYDDSSPPPSHQRVMCFRCPSISHFSCVSVHFSSTFLCS
        MNR H N L  +  SHCQ+CG SQS CWILH VR KA+FRRLCTNCVLK+NLS FCP+CFDVY+DS+PPPSH RVMCFRCPSISH SCVS  FSSTFLC 
Subjt:  MNRPHRN-LLLHPNSHCQECGTSQSHCWILHQVRLKASFRRLCTNCVLKNNLSGFCPVCFDVYDDSSPPPSHQRVMCFRCPSISHFSCVSVHFSSTFLCS

Query:  LCSDPRFTFFDGFHS-AALSQSGSAAVLADNRVVDCKSARAIVAAARVAAQSMRRAAADARAAAETKIKNAAFAKKQATLALERLAFLVLQEKDRNGCVK
        LCSDPRF FFDGF S  +L QS S       + VD KS +AIVAAARV+AQSMRRAA DARA AE KIKNAAFAKKQATLALE+LA+LVLQEKD+NG  K
Subjt:  LCSDPRFTFFDGFHS-AALSQSGSAAVLADNRVVDCKSARAIVAAARVAAQSMRRAAADARAAAETKIKNAAFAKKQATLALERLAFLVLQEKDRNGCVK

Query:  SNNGDAVAGERTVEES--KLQDKEVTAILE
        S NGDAV  ER VEE   KLQ+K+VTAI +
Subjt:  SNNGDAVAGERTVEES--KLQDKEVTAILE

XP_022137907.1 uncharacterized protein LOC111009209 [Momordica charantia]

9.3e-124

98.72

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Query:  MNRPHRNLLLHPNSHCQECGTSQSHCWILHQVRLKASFRRLCTNCVLKNNLSGFCPVCFDVYDDSSPPPSHQRVMCFRCPSISHFSCVSVHFSSTFLCSL
        MNRPHRNLLLHPNSHCQECGTSQSHCWILH VRLKASFRRLCTNCVLKNNLSGFCPVCFDVYDDSSPPPSHQRVMCFRCPSISHFSCVSVHFSSTFLCS 
Subjt:  MNRPHRNLLLHPNSHCQECGTSQSHCWILHQVRLKASFRRLCTNCVLKNNLSGFCPVCFDVYDDSSPPPSHQRVMCFRCPSISHFSCVSVHFSSTFLCSL

Query:  CSDPRFTFFDGFHSAALSQSGSAAVLADNRVVDCKSARAIVAAARVAAQSMRRAAADARAAAETKIKNAAFAKKQATLALERLAFLVLQEKDRNGCVKSN
        CSDPRFTFFDGFHSAALSQSGSAAVLADNRVVDCKSARAIVAAARVAAQSMRRAAADARAAAETKIKNAAFAKKQATLALERLAFLVLQE+DRNGCVKSN
Subjt:  CSDPRFTFFDGFHSAALSQSGSAAVLADNRVVDCKSARAIVAAARVAAQSMRRAAADARAAAETKIKNAAFAKKQATLALERLAFLVLQEKDRNGCVKSN

Query:  NGDAVAGERTVEESKLQDKEVTAILERKKWNQSQ
        NGDAVAGERTVEESKLQDKEVTAILERKKWNQSQ
Subjt:  NGDAVAGERTVEESKLQDKEVTAILERKKWNQSQ

XP_022955770.1 uncharacterized protein LOC111457661 [Cucurbita moschata]

4.5e-78

71.06

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Query:  MNRPHRN-LLLHPNSHCQECGTSQSHCWILHQVRLKASFRRLCTNCVLKNNLSGFCPVCFDVYDDSSPPPSHQRVMCFRCPSISHFSCVSVHFSSTFLCS
        MNRPH N L  +  S+C ECG SQS CWILH VR KASFRRLCTNCVLKNNLS FCP+CFD+YDDS+PP SHQRVMCFRCPSISH SC S  FSSTFLC 
Subjt:  MNRPHRN-LLLHPNSHCQECGTSQSHCWILHQVRLKASFRRLCTNCVLKNNLSGFCPVCFDVYDDSSPPPSHQRVMCFRCPSISHFSCVSVHFSSTFLCS

Query:  LCSDPRFTFFDGFHSAALSQSGSAAVLADNRVVDCKSARAIVAAARVAAQSMRRAAADARAAAETKIKNAAFAKKQATLALERLAFLVLQEKDRNGCVKS
        +CSDP F FFDGF S  L QS  A  +   R  D KSA+AIVAAARVAAQSMRRAAADARA AE KI+NA FAKKQATLALERLAFLVLQEKDRNG  K+
Subjt:  LCSDPRFTFFDGFHSAALSQSGSAAVLADNRVVDCKSARAIVAAARVAAQSMRRAAADARAAAETKIKNAAFAKKQATLALERLAFLVLQEKDRNGCVKS

Query:  NNGDAVAGERTVEESKLQDKEVTAILERKKWNQSQ
        N   A       EE++LQ + VTAILER K N +Q
Subjt:  NNGDAVAGERTVEESKLQDKEVTAILERKKWNQSQ

XP_038902666.1 uncharacterized protein LOC120089301 [Benincasa hispida]

1.3e-85

76.27

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Query:  MNRPHRN-LLLHPNSHCQECGTSQSHCWILHQVRLKASFRRLCTNCVLKNNLSGFCPVCFDVYDDSSPPPSHQRVMCFRCPSISHFSCVSVHFSSTFLCS
        MNR H N L  +  SHCQECG SQS CWILH VRLKASFRRLCTNCVLK+NLS FCP+CFDVYDDS+PPPSHQRVMCFRCPSISH SC S  FSSTFLC 
Subjt:  MNRPHRN-LLLHPNSHCQECGTSQSHCWILHQVRLKASFRRLCTNCVLKNNLSGFCPVCFDVYDDSSPPPSHQRVMCFRCPSISHFSCVSVHFSSTFLCS

Query:  LCSDPRFTFFDGFHSAALSQSGSAAVLADNRVVDCKSARAIVAAARVAAQSMRRAAADARAAAETKIKNAAFAKKQATLALERLAFLVLQEKDRNGCVKS
        LCSDP F FFDGF S  L QS S       R VD KSA+AIVAAARV+AQSMRRAA DARA AE KIKNAAFAKKQATLALERLA+LVLQEKDRNG  K+
Subjt:  LCSDPRFTFFDGFHSAALSQSGSAAVLADNRVVDCKSARAIVAAARVAAQSMRRAAADARAAAETKIKNAAFAKKQATLALERLAFLVLQEKDRNGCVKS

Query:  NNGDAVAGERTVEE--SKLQDKEVTAILERKKWNQS
         NGDAVAGERTVEE  SKLQ+KEVT+I  R K N++
Subjt:  NNGDAVAGERTVEE--SKLQDKEVTAILERKKWNQS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L5G4 Uncharacterized protein

1.7e-78

72.61

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Query:  MNRPHRN-LLLHPNSHCQECGTSQSHCWILHQVRLKASFRRLCTNCVLKNNLSGFCPVCFDVYDDSSPPPSHQRVMCFRCPSISHFSCVSVHFSSTFLCS
        MNR H N L  +  SHCQ+CG SQS CWILH VR KA+FRRLCTNCVLK+NLS FCP+CFDVY+DS+PPPSH RVMCFRCPSISH SCVS  FSSTFLC 
Subjt:  MNRPHRN-LLLHPNSHCQECGTSQSHCWILHQVRLKASFRRLCTNCVLKNNLSGFCPVCFDVYDDSSPPPSHQRVMCFRCPSISHFSCVSVHFSSTFLCS

Query:  LCSDPRFTFFDGFHS-AALSQSGSAAVLADNRVVDCKSARAIVAAARVAAQSMRRAAADARAAAETKIKNAAFAKKQATLALERLAFLVLQEKDRNGCVK
        LCSDPRF FFDGF S  +L QS S       + VD KS +AIVAAARV+AQSMRRAA DARA AE KIKNAAFAKKQATLALE+LA+LVLQEKD+NG  K
Subjt:  LCSDPRFTFFDGFHS-AALSQSGSAAVLADNRVVDCKSARAIVAAARVAAQSMRRAAADARAAAETKIKNAAFAKKQATLALERLAFLVLQEKDRNGCVK

Query:  SNNGDAVAGERTVEES--KLQDKEVTAILE
        S NGDAV  ER VEE   KLQ+K+VTAI +
Subjt:  SNNGDAVAGERTVEES--KLQDKEVTAILE

A0A5A7U9X0 DNA binding protein

7.5e-79

72.49

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Query:  MNRPHRNLLLHPNSHCQECGTSQSHCWILHQVRLKASFRRLCTNCVLKNNLSGFCPVCFDVYDDSSPPPSHQRVMCFRCPSISHFSCVSVHFSSTFLCSL
        MNR   +L  +  SHCQECG SQS CWILH VR KA+FRRLCTNCVLK+NLS FCP+CFDVY+DS+PPPSH RVMC+RCPSISH SCVS  FSSTFLC L
Subjt:  MNRPHRNLLLHPNSHCQECGTSQSHCWILHQVRLKASFRRLCTNCVLKNNLSGFCPVCFDVYDDSSPPPSHQRVMCFRCPSISHFSCVSVHFSSTFLCSL

Query:  CSDPRFTFFDGFHS-AALSQSGSAAVLADNRVVDCKSARAIVAAARVAAQSMRRAAADARAAAETKIKNAAFAKKQATLALERLAFLVLQEKDRNGCVKS
        CSDPRF FFDGF S  +L QS S       + VD KS +AIVAAARV+AQSMRRAA DARA AE KIKNAAFAKKQATLALE+LA+LVLQEKD+NG  KS
Subjt:  CSDPRFTFFDGFHS-AALSQSGSAAVLADNRVVDCKSARAIVAAARVAAQSMRRAAADARAAAETKIKNAAFAKKQATLALERLAFLVLQEKDRNGCVKS

Query:  NNGDAVAGERTVEES--KLQDKEVTAILE
         NGDAVA ER VEE   KL +KEVTAI +
Subjt:  NNGDAVAGERTVEES--KLQDKEVTAILE

A0A6J1C9K9 uncharacterized protein LOC111009209

4.5e-124

98.72

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Query:  MNRPHRNLLLHPNSHCQECGTSQSHCWILHQVRLKASFRRLCTNCVLKNNLSGFCPVCFDVYDDSSPPPSHQRVMCFRCPSISHFSCVSVHFSSTFLCSL
        MNRPHRNLLLHPNSHCQECGTSQSHCWILH VRLKASFRRLCTNCVLKNNLSGFCPVCFDVYDDSSPPPSHQRVMCFRCPSISHFSCVSVHFSSTFLCS 
Subjt:  MNRPHRNLLLHPNSHCQECGTSQSHCWILHQVRLKASFRRLCTNCVLKNNLSGFCPVCFDVYDDSSPPPSHQRVMCFRCPSISHFSCVSVHFSSTFLCSL

Query:  CSDPRFTFFDGFHSAALSQSGSAAVLADNRVVDCKSARAIVAAARVAAQSMRRAAADARAAAETKIKNAAFAKKQATLALERLAFLVLQEKDRNGCVKSN
        CSDPRFTFFDGFHSAALSQSGSAAVLADNRVVDCKSARAIVAAARVAAQSMRRAAADARAAAETKIKNAAFAKKQATLALERLAFLVLQE+DRNGCVKSN
Subjt:  CSDPRFTFFDGFHSAALSQSGSAAVLADNRVVDCKSARAIVAAARVAAQSMRRAAADARAAAETKIKNAAFAKKQATLALERLAFLVLQEKDRNGCVKSN

Query:  NGDAVAGERTVEESKLQDKEVTAILERKKWNQSQ
        NGDAVAGERTVEESKLQDKEVTAILERKKWNQSQ
Subjt:  NGDAVAGERTVEESKLQDKEVTAILERKKWNQSQ

A0A6J1GVZ7 uncharacterized protein LOC111457661

2.2e-78

71.06

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Query:  MNRPHRN-LLLHPNSHCQECGTSQSHCWILHQVRLKASFRRLCTNCVLKNNLSGFCPVCFDVYDDSSPPPSHQRVMCFRCPSISHFSCVSVHFSSTFLCS
        MNRPH N L  +  S+C ECG SQS CWILH VR KASFRRLCTNCVLKNNLS FCP+CFD+YDDS+PP SHQRVMCFRCPSISH SC S  FSSTFLC 
Subjt:  MNRPHRN-LLLHPNSHCQECGTSQSHCWILHQVRLKASFRRLCTNCVLKNNLSGFCPVCFDVYDDSSPPPSHQRVMCFRCPSISHFSCVSVHFSSTFLCS

Query:  LCSDPRFTFFDGFHSAALSQSGSAAVLADNRVVDCKSARAIVAAARVAAQSMRRAAADARAAAETKIKNAAFAKKQATLALERLAFLVLQEKDRNGCVKS
        +CSDP F FFDGF S  L QS  A  +   R  D KSA+AIVAAARVAAQSMRRAAADARA AE KI+NA FAKKQATLALERLAFLVLQEKDRNG  K+
Subjt:  LCSDPRFTFFDGFHSAALSQSGSAAVLADNRVVDCKSARAIVAAARVAAQSMRRAAADARAAAETKIKNAAFAKKQATLALERLAFLVLQEKDRNGCVKS

Query:  NNGDAVAGERTVEESKLQDKEVTAILERKKWNQSQ
        N   A       EE++LQ + VTAILER K N +Q
Subjt:  NNGDAVAGERTVEESKLQDKEVTAILERKKWNQSQ

A0A6J1IXP5 uncharacterized protein LOC111479468

4.9e-78

70.64

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Query:  MNRPHRN-LLLHPNSHCQECGTSQSHCWILHQVRLKASFRRLCTNCVLKNNLSGFCPVCFDVYDDSSPPPSHQRVMCFRCPSISHFSCVSVHFSSTFLCS
        MNRPH N L  +  S+C ECG SQS CWILH VR KASFRRLCTNCVLKNNLS FCP+CFD+YDDS+PP SHQRVMCFRCPSISH SC S  FSSTFLC 
Subjt:  MNRPHRN-LLLHPNSHCQECGTSQSHCWILHQVRLKASFRRLCTNCVLKNNLSGFCPVCFDVYDDSSPPPSHQRVMCFRCPSISHFSCVSVHFSSTFLCS

Query:  LCSDPRFTFFDGFHSAALSQSGSAAVLADNRVVDCKSARAIVAAARVAAQSMRRAAADARAAAETKIKNAAFAKKQATLALERLAFLVLQEKDRNGCVKS
        LCSDP F FFDGF S +L QS  A  +   R  D KSA+AIVAAARV AQSMRRAAADARA AE K +NA FAKKQATLALERLA+LVLQEKDRNG  K+
Subjt:  LCSDPRFTFFDGFHSAALSQSGSAAVLADNRVVDCKSARAIVAAARVAAQSMRRAAADARAAAETKIKNAAFAKKQATLALERLAFLVLQEKDRNGCVKS

Query:  NNGDAVAGERTVEESKLQDKEVTAILERKKWNQSQ
        N   A       EE++LQ + VTAILER K NQ+Q
Subjt:  NNGDAVAGERTVEESKLQDKEVTAILERKKWNQSQ

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G09520.1 LOCATED IN: chloroplast

1.8e-24

39.01

Show/hide

Query:  CQECGTSQSHCWILHQVRLKASFRRLCTNCVLKNNLSGFCPVCFDVYDDSSPPPSHQRVMCF--RCPSISHFSCVSVHFSSTFLCSLCSDPR-FTFFDGF
        C +CG+S +  W++H VRL+AS R  CT+C+L+N+ + FCP CF +YD S  PPS +RV C    C S++H  C       ++LC  C DP  F+FF   
Subjt:  CQECGTSQSHCWILHQVRLKASFRRLCTNCVLKNNLSGFCPVCFDVYDDSSPPPSHQRVMCF--RCPSISHFSCVSVHFSSTFLCSLCSDPR-FTFFDGF

Query:  HSAALSQSGSAAVLADNRVVDCKSARAIVAAARVAAQSMRRAAADARAAAETKIKNAAFAKKQATLALERLAFLVLQEKDRN
            + ++GS       R VD   + A + AA++AA SM +A   A+   + + K AA AKK+A  ALE++  L  +EK R+
Subjt:  HSAALSQSGSAAVLADNRVVDCKSARAIVAAARVAAQSMRRAAADARAAAETKIKNAAFAKKQATLALERLAFLVLQEKDRN

AT3G17460.1 PHD finger family protein

5.2e-16

34.25

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Query:  LHQVRLKASFRRLCTNCVLKNNLSGFCPVCFDVYDDSSPPPSHQRVMCFRCPSISHFSCVSVHFS--------------STFLCSLCSDPRFTFFDGFHS
        +H V    +FRRLCT+C+LK     FC VCF+++D++ PP +  R++C  CPS +H SC +   S              S+F C  CS+P FTFF     
Subjt:  LHQVRLKASFRRLCTNCVLKNNLSGFCPVCFDVYDDSSPPPSHQRVMCFRCPSISHFSCVSVHFS--------------STFLCSLCSDPRFTFFDGFHS

Query:  AALSQSGSAAVLADNRVVDCKSARAIVAAARVAAQSMRRAAADARAAAETKIKNAAFAKKQATLALERLAFLVLQEKDRNG
            +S     + D   +  KSA A+VAA  ++  +M +A A  +  A  KI  A  AK +A  AL  L  +V+++    G
Subjt:  AALSQSGSAAVLADNRVVDCKSARAIVAAARVAAQSMRRAAADARAAAETKIKNAAFAKKQATLALERLAFLVLQEKDRNG

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAATCGGCCGCACAGGAACCTTCTTCTTCACCCCAATTCTCACTGCCAAGAATGCGGCACCTCTCAATCCCACTGCTGGATCCTCCACCAAGTCCGTCTCAAAGCCTC
CTTCCGCCGTCTCTGCACCAATTGCGTTCTCAAGAACAATCTCTCCGGTTTCTGCCCCGTTTGCTTCGATGTTTACGACGATTCCTCTCCCCCGCCCTCTCACCAGCGAG
TTATGTGCTTCAGATGCCCTTCAATCTCCCACTTCTCCTGCGTTTCCGTCCATTTTTCTTCTACCTTCTTGTGCTCTCTCTGCTCTGATCCTCGTTTTACCTTCTTCGAC
GGTTTCCACTCCGCCGCCCTCTCCCAGTCCGGCTCGGCCGCCGTTCTGGCTGACAACAGAGTCGTTGATTGTAAATCGGCTAGGGCGATCGTCGCTGCCGCACGTGTCGC
TGCTCAATCTATGCGGAGAGCGGCGGCTGACGCTAGGGCTGCGGCGGAGACGAAGATCAAGAATGCTGCATTTGCCAAGAAGCAGGCTACTCTCGCATTGGAGCGACTGG
CTTTTCTCGTGCTACAGGAGAAGGACAGAAACGGATGCGTGAAGAGTAATAATGGAGATGCTGTTGCAGGTGAGAGGACGGTGGAAGAATCCAAGCTACAGGACAAGGAG
GTAACAGCCATTCTCGAGCGGAAGAAGTGGAATCAGAGTCAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MNRPHRNLLLHPNSHCQECGTSQSHCWILHQVRLKASFRRLCTNCVLKNNLSGFCPVCFDVYDDSSPPPSHQRVMCFRCPSISHFSCVSVHFSSTFLCSLCSDPRFTFFD
GFHSAALSQSGSAAVLADNRVVDCKSARAIVAAARVAAQSMRRAAADARAAAETKIKNAAFAKKQATLALERLAFLVLQEKDRNGCVKSNNGDAVAGERTVEESKLQDKE
VTAILERKKWNQSQ

MS008208 (gene) of Bitter gourd (TR) v1 genome