; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS008213 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS008213
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionsignal recognition particle 19 kDa protein
Genome locationscaffold45:238534..239957
RNA-Seq ExpressionMS008213
SyntenyMS008213
Gene Ontology termsGO:0006614 - SRP-dependent cotranslational protein targeting to membrane (biological process)
GO:0005786 - signal recognition particle, endoplasmic reticulum targeting (cellular component)
GO:0004386 - helicase activity (molecular function)
GO:0008312 - 7S RNA binding (molecular function)
InterPro domainsIPR002778 - Signal recognition particle, SRP19 subunit
IPR036521 - Signal recognition particle, subunit SRP19-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6582147.1 Signal recognition particle 19 kDa protein, partial [Cucurbita argyrosperma subsp. sororia]2.8e-6794.29Show/hide
Query:  EFGRNMDGEVPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQ
        E G NMDGE+PNIKRWVVLYP+YINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAI SRKQ
Subjt:  EFGRNMDGEVPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQ

Query:  MMLRIAELVPRHPGRTKKQEPASSSTAGPSKSGKGGRKKK
        +MLRIAELVPRHPGR KKQEPASSSTAGPSK GKGGRKKK
Subjt:  MMLRIAELVPRHPGRTKKQEPASSSTAGPSKSGKGGRKKK

KGN54616.2 hypothetical protein Csa_018066 [Cucumis sativus]2.1e-6795.04Show/hide
Query:  EFGRNMDGEVPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQ
        EFG NMDGE+PNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTC EIGDCC HLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQ
Subjt:  EFGRNMDGEVPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQ

Query:  MMLRIAELVPRHPGRTKKQEPA-SSSTAGPSKSGKGGRKKK
        +MLRIAELVPRHPGRTKKQEPA SSSTAGPSK GKGGRKKK
Subjt:  MMLRIAELVPRHPGRTKKQEPA-SSSTAGPSKSGKGGRKKK

XP_008438988.1 PREDICTED: signal recognition particle 19 kDa protein [Cucumis melo]1.8e-6696.3Show/hide
Query:  MDGEVPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQMMLRI
        MDGE+PNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRV LKKEDGTLSNPAITSRKQ+MLR+
Subjt:  MDGEVPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQMMLRI

Query:  AELVPRHPGRTKKQEPASSSTAGPSKSGKGGRKKK
        AELVPRHPGRTKKQEPASSSTAGPSK GKGGRKKK
Subjt:  AELVPRHPGRTKKQEPASSSTAGPSKSGKGGRKKK

XP_022138272.1 signal recognition particle 19 kDa protein [Momordica charantia]1.8e-69100Show/hide
Query:  MDGEVPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQMMLRI
        MDGEVPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQMMLRI
Subjt:  MDGEVPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQMMLRI

Query:  AELVPRHPGRTKKQEPASSSTAGPSKSGKGGRKKK
        AELVPRHPGRTKKQEPASSSTAGPSKSGKGGRKKK
Subjt:  AELVPRHPGRTKKQEPASSSTAGPSKSGKGGRKKK

XP_038879562.1 signal recognition particle 19 kDa protein [Benincasa hispida]2.8e-6797.78Show/hide
Query:  MDGEVPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQMMLRI
        MDGE+PNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQ+MLRI
Subjt:  MDGEVPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQMMLRI

Query:  AELVPRHPGRTKKQEPASSSTAGPSKSGKGGRKKK
        AELVPRHPGRTKKQEPASSSTAGPSK GKGGRKKK
Subjt:  AELVPRHPGRTKKQEPASSSTAGPSKSGKGGRKKK

TrEMBL top hitse value%identityAlignment
A0A0A0L5F9 Uncharacterized protein1.1e-6996.43Show/hide
Query:  EFGRNMDGEVPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQ
        EFGRNMDGE+PNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRV LKKEDG LSNPAITSRKQ
Subjt:  EFGRNMDGEVPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQ

Query:  MMLRIAELVPRHPGRTKKQEPASSSTAGPSKSGKGGRKKK
        +MLRIAELVPRHPGRTKKQEPASSSTAGPSK GKGGRKKK
Subjt:  MMLRIAELVPRHPGRTKKQEPASSSTAGPSKSGKGGRKKK

A0A1S3AYC2 signal recognition particle 19 kDa protein8.8e-6796.3Show/hide
Query:  MDGEVPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQMMLRI
        MDGE+PNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRV LKKEDGTLSNPAITSRKQ+MLR+
Subjt:  MDGEVPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQMMLRI

Query:  AELVPRHPGRTKKQEPASSSTAGPSKSGKGGRKKK
        AELVPRHPGRTKKQEPASSSTAGPSK GKGGRKKK
Subjt:  AELVPRHPGRTKKQEPASSSTAGPSKSGKGGRKKK

A0A6J1CAM2 signal recognition particle 19 kDa protein8.5e-70100Show/hide
Query:  MDGEVPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQMMLRI
        MDGEVPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQMMLRI
Subjt:  MDGEVPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQMMLRI

Query:  AELVPRHPGRTKKQEPASSSTAGPSKSGKGGRKKK
        AELVPRHPGRTKKQEPASSSTAGPSKSGKGGRKKK
Subjt:  AELVPRHPGRTKKQEPASSSTAGPSKSGKGGRKKK

A0A6J1GUF8 signal recognition particle 19 kDa protein4.4e-6695.56Show/hide
Query:  MDGEVPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQMMLRI
        MDGE+PNIKRWVVLYP+YINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAI SRKQ+MLRI
Subjt:  MDGEVPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQMMLRI

Query:  AELVPRHPGRTKKQEPASSSTAGPSKSGKGGRKKK
        AELVPRHPGR KKQEPASSSTAGPSK GKGGRKKK
Subjt:  AELVPRHPGRTKKQEPASSSTAGPSKSGKGGRKKK

A0A6J1IY39 signal recognition particle 19 kDa protein3.3e-6696.3Show/hide
Query:  MDGEVPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQMMLRI
        MDGE+PNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAI SRKQ+MLRI
Subjt:  MDGEVPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQMMLRI

Query:  AELVPRHPGRTKKQEPASSSTAGPSKSGKGGRKKK
        AELVPRHPGR KKQEPASSSTAGPSK GKGGRKKK
Subjt:  AELVPRHPGRTKKQEPASSSTAGPSKSGKGGRKKK

SwissProt top hitse value%identityAlignment
P09132 Signal recognition particle 19 kDa protein1.3e-2249.62Show/hide
Query:  RWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYP----RDFMQRGRVRVLLKKEDGTLSNPAITSRKQMMLRIAELVP
        R++ +YP Y+N+KKTIAEGRRI +SKA ENPT  EI D CS + L   +E +K Y     RD   RGRVRV LK+EDG+L      SRK +ML  AE++P
Subjt:  RWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYP----RDFMQRGRVRVLLKKEDGTLSNPAITSRKQMMLRIAELVP

Query:  RHPGRTKKQEPASSS--TAGPSKSGKGGRKK
        +   RT+K   A  S      SK GKG +KK
Subjt:  RHPGRTKKQEPASSS--TAGPSKSGKGGRKK

P49964 Signal recognition particle 19 kDa protein1.4e-4872.09Show/hide
Query:  NIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQMMLRIAELVPR
        +IK+W V+YP+Y+NSKKT+AEGRRI   KAC +PTC EI DCCSHLK+P AIE+DKAYPRDF Q GRVRV LKK+DG+  NPAI ++KQ+M++IAELVP+
Subjt:  NIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQMMLRIAELVPR

Query:  HPGRTKKQEPASSSTAGPSKSGKGGRKKK
        H GRTKKQEPA+SSTAG SK GKGG+KKK
Subjt:  HPGRTKKQEPASSSTAGPSKSGKGGRKKK

Q5RBR1 Signal recognition particle 19 kDa protein1.3e-2249.62Show/hide
Query:  RWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYP----RDFMQRGRVRVLLKKEDGTLSNPAITSRKQMMLRIAELVP
        R++ +YP Y+N+KKTIAEGRRI +SKA ENPT  EI D CS + L   +E +K Y     RD   RGRVRV LK+EDG+L      SRK +ML  AE++P
Subjt:  RWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYP----RDFMQRGRVRVLLKKEDGTLSNPAITSRKQMMLRIAELVP

Query:  RHPGRTKKQEPASSS--TAGPSKSGKGGRKK
        +   RT+K   A  S      SK GKG +KK
Subjt:  RHPGRTKKQEPASSS--TAGPSKSGKGGRKK

Q943Z6 Signal recognition particle 19 kDa protein1.5e-5070.34Show/hide
Query:  MDGEVPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQMMLRI
        MD    NIK+WVV+YP+YINSKKT+AEGRRI VSK+CENP C EI DCC HLKLP A+EIDKAYPRDFMQ GRVRV LK+EDGTL NPAITSRK +M +I
Subjt:  MDGEVPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQMMLRI

Query:  AELVPRHPGRTKKQE---------PASSSTAG-PSKSGKGGRKKK
        AELVPRHP R KKQE          A++ST+G  SKSGKGG+KK+
Subjt:  AELVPRHPGRTKKQE---------PASSSTAG-PSKSGKGGRKKK

Q9D7A6 Signal recognition particle 19 kDa protein1.3e-2249.24Show/hide
Query:  RWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYP----RDFMQRGRVRVLLKKEDGTLSNPAITSRKQMMLRIAELVP
        R++ +YP Y+N+KKTIAEGRRI +SKA ENPT  EI D CS + L   +E +K Y     RD   RGRVRV LK+EDG+L      SRK +ML +AE++P
Subjt:  RWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYP----RDFMQRGRVRVLLKKEDGTLSNPAITSRKQMMLRIAELVP

Query:  RHPGRTKKQ---EPASSSTAGPSKSGKGGRKK
        +   RT+K    +P      G SK GKG +KK
Subjt:  RHPGRTKKQ---EPASSSTAGPSKSGKGGRKK

Arabidopsis top hitse value%identityAlignment
AT1G48160.1 signal recognition particle 19 kDa protein, putative / SRP19, putative1.0e-5170.34Show/hide
Query:  MDGEVPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQMMLRI
        MD    NIK+WVV+YP+YINSKKT+AEGRRI VSK+CENP C EI DCC HLKLP A+EIDKAYPRDFMQ GRVRV LK+EDGTL NPAITSRK +M +I
Subjt:  MDGEVPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQMMLRI

Query:  AELVPRHPGRTKKQE---------PASSSTAG-PSKSGKGGRKKK
        AELVPRHP R KKQE          A++ST+G  SKSGKGG+KK+
Subjt:  AELVPRHPGRTKKQE---------PASSSTAG-PSKSGKGGRKKK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GAATTTGGTCGGAACATGGATGGAGAAGTTCCCAACATAAAGAGATGGGTAGTATTGTATCCCATCTATATTAATTCAAAGAAGACAATAGCTGAAGGAAGACGTATAGG
TGTTAGCAAAGCATGTGAGAATCCTACGTGTGCTGAGATTGGGGATTGCTGCAGTCATCTCAAACTGCCTTTTGCAATCGAGATTGATAAAGCTTACCCTCGAGATTTTA
TGCAAAGAGGGAGAGTGCGGGTTCTGCTGAAAAAGGAGGATGGAACCCTGTCCAATCCAGCTATTACTTCCAGAAAACAAATGATGCTTCGTATAGCTGAACTTGTTCCT
AGACATCCCGGGAGGACAAAGAAACAGGAGCCTGCATCATCGTCAACTGCAGGACCTTCAAAATCTGGCAAGGGCGGAAGAAAGAAGAAA
mRNA sequenceShow/hide mRNA sequence
GAATTTGGTCGGAACATGGATGGAGAAGTTCCCAACATAAAGAGATGGGTAGTATTGTATCCCATCTATATTAATTCAAAGAAGACAATAGCTGAAGGAAGACGTATAGG
TGTTAGCAAAGCATGTGAGAATCCTACGTGTGCTGAGATTGGGGATTGCTGCAGTCATCTCAAACTGCCTTTTGCAATCGAGATTGATAAAGCTTACCCTCGAGATTTTA
TGCAAAGAGGGAGAGTGCGGGTTCTGCTGAAAAAGGAGGATGGAACCCTGTCCAATCCAGCTATTACTTCCAGAAAACAAATGATGCTTCGTATAGCTGAACTTGTTCCT
AGACATCCCGGGAGGACAAAGAAACAGGAGCCTGCATCATCGTCAACTGCAGGACCTTCAAAATCTGGCAAGGGCGGAAGAAAGAAGAAA
Protein sequenceShow/hide protein sequence
EFGRNMDGEVPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQMMLRIAELVP
RHPGRTKKQEPASSSTAGPSKSGKGGRKKK