CuGenDBv2

Gene ID	MS008219
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Detected protein of confused Function
Genome location	scaffold45:310221..312123
RNA-Seq Expression	MS008219
Synteny	MS008219
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR008011 - Complex 1 LYR protein

Homology

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GenBank top hits

e value

%identity

Alignment

XP_006466529.1 uncharacterized protein LOC102622612 [Citrus sinensis]

2.7e-39

91.21

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Query:  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQQHNTELVVSMVRQQFRKNMHETDPEKIQKLKDDAARGLINHILYESERLSGRKFSQSS
        MPSLQTALPPELANNVIRLYRECLRRAKYIGHQ+HNTEL+V+MVRQQF++N HETDPEKIQK+KDDAARGLINHILYESERLSGRKFS+SS
Subjt:  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQQHNTELVVSMVRQQFRKNMHETDPEKIQKLKDDAARGLINHILYESERLSGRKFSQSS

XP_022138283.1 uncharacterized protein LOC111009499 [Momordica charantia]

1.6e-42

100

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Query:  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQQHNTELVVSMVRQQFRKNMHETDPEKIQKLKDDAARGLINHILYESERLSGRKFSQSS
        MPSLQTALPPELANNVIRLYRECLRRAKYIGHQQHNTELVVSMVRQQFRKNMHETDPEKIQKLKDDAARGLINHILYESERLSGRKFSQSS
Subjt:  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQQHNTELVVSMVRQQFRKNMHETDPEKIQKLKDDAARGLINHILYESERLSGRKFSQSS

XP_022964695.1 uncharacterized protein LOC111464671 [Cucurbita moschata]

7.2e-40

93.41

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Query:  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQQHNTELVVSMVRQQFRKNMHETDPEKIQKLKDDAARGLINHILYESERLSGRKFSQSS
        MPSLQTALPPELANNVIRLYRECLRRAK+IGH+QHNT+LVVSMV+QQFRKNMHETDPEKIQKLKDDAARGLINHILYESERL+GRK SQSS
Subjt:  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQQHNTELVVSMVRQQFRKNMHETDPEKIQKLKDDAARGLINHILYESERLSGRKFSQSS

XP_022972196.1 uncharacterized protein LOC111470803 [Cucurbita maxima]

2.5e-40

94.51

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Query:  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQQHNTELVVSMVRQQFRKNMHETDPEKIQKLKDDAARGLINHILYESERLSGRKFSQSS
        MPSLQTALPPELANNVIRLYRECLRRAKYIGH+QHNT+LVVSMV+QQFRKNMHETDPEKIQKLKDDAARGLINHILYESERL+GRK SQSS
Subjt:  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQQHNTELVVSMVRQQFRKNMHETDPEKIQKLKDDAARGLINHILYESERLSGRKFSQSS

XP_038878962.1 uncharacterized protein LOC120071039 [Benincasa hispida]

5.0e-41

96.7

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Query:  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQQHNTELVVSMVRQQFRKNMHETDPEKIQKLKDDAARGLINHILYESERLSGRKFSQSS
        MPSLQTALPPELANNVIRLYRECLRRAKYIGHQQHNTEL+VSMVRQQFRKNM ETDPEKIQKLKDDAARGLINHILYESER+SGRKFSQSS
Subjt:  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQQHNTELVVSMVRQQFRKNMHETDPEKIQKLKDDAARGLINHILYESERLSGRKFSQSS

TrEMBL top hits

e value

%identity

Alignment

A0A6J1C9Q7 uncharacterized protein LOC111009499

7.5e-43

100

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Query:  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQQHNTELVVSMVRQQFRKNMHETDPEKIQKLKDDAARGLINHILYESERLSGRKFSQSS
        MPSLQTALPPELANNVIRLYRECLRRAKYIGHQQHNTELVVSMVRQQFRKNMHETDPEKIQKLKDDAARGLINHILYESERLSGRKFSQSS
Subjt:  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQQHNTELVVSMVRQQFRKNMHETDPEKIQKLKDDAARGLINHILYESERLSGRKFSQSS

A0A6J1HLJ6 uncharacterized protein LOC111464671

3.5e-40

93.41

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Query:  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQQHNTELVVSMVRQQFRKNMHETDPEKIQKLKDDAARGLINHILYESERLSGRKFSQSS
        MPSLQTALPPELANNVIRLYRECLRRAK+IGH+QHNT+LVVSMV+QQFRKNMHETDPEKIQKLKDDAARGLINHILYESERL+GRK SQSS
Subjt:  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQQHNTELVVSMVRQQFRKNMHETDPEKIQKLKDDAARGLINHILYESERLSGRKFSQSS

A0A6J1I5B4 uncharacterized protein LOC111470803

1.2e-40

94.51

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Query:  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQQHNTELVVSMVRQQFRKNMHETDPEKIQKLKDDAARGLINHILYESERLSGRKFSQSS
        MPSLQTALPPELANNVIRLYRECLRRAKYIGH+QHNT+LVVSMV+QQFRKNMHETDPEKIQKLKDDAARGLINHILYESERL+GRK SQSS
Subjt:  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQQHNTELVVSMVRQQFRKNMHETDPEKIQKLKDDAARGLINHILYESERLSGRKFSQSS

A0A7N2R6B7 Uncharacterized protein

1.7e-39

90.11

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Query:  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQQHNTELVVSMVRQQFRKNMHETDPEKIQKLKDDAARGLINHILYESERLSGRKFSQSS
        MPSLQTALPPELANNVIRLYRECLRRAKYIGH+QHNTEL+V MVRQQF+K+MHETDPEKIQKLKDDAARGLINHILYESE++SGRKFS+S+
Subjt:  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQQHNTELVVSMVRQQFRKNMHETDPEKIQKLKDDAARGLINHILYESERLSGRKFSQSS

D7T656 Uncharacterized protein

1.3e-39

91.21

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Query:  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQQHNTELVVSMVRQQFRKNMHETDPEKIQKLKDDAARGLINHILYESERLSGRKFSQSS
        MPSLQTALPPELANNVIRLYRECLRRA+YIGHQQHNTELVV MVRQQF+K+MHETDPEKIQKLKDDAARGLINHILYESE++SGRKFS+ S
Subjt:  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQQHNTELVVSMVRQQFRKNMHETDPEKIQKLKDDAARGLINHILYESERLSGRKFSQSS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G17300.1 unknown protein

5.5e-38

82.42

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Query:  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQQHNTELVVSMVRQQFRKNMHETDPEKIQKLKDDAARGLINHILYESERLSGRKFSQSS
        MPSLQT+LPPELANNV+RLYRECLRRAK+IG QQHNTELVV MVRQQF+K+M+ETDPEKIQKLKDDAARGLINH+L+ES +L+G K SQ S
Subjt:  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQQHNTELVVSMVRQQFRKNMHETDPEKIQKLKDDAARGLINHILYESERLSGRKFSQSS

AT3G17300.2 unknown protein

6.8e-20

79.31

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Query:  QHNTELVVSMVRQQFRKNMHETDPEKIQKLKDDAARGLINHILYESERLSGRKFSQSS
        QHNTELVV MVRQQF+K+M+ETDPEKIQKLKDDAARGLINH+L+ES +L+G K SQ S
Subjt:  QHNTELVVSMVRQQFRKNMHETDPEKIQKLKDDAARGLINHILYESERLSGRKFSQSS

Sequences

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CDS sequence

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ATGCCATCTCTACAGACTGCTCTACCTCCTGAGCTTGCGAATAATGTCATTAGGCTTTACCGCGAGTGCCTGCGAAGAGCCAAGTATATTGGTCATCAGCAACATAACAC
CGAGCTTGTTGTTAGTATGGTGAGACAACAATTCAGAAAGAACATGCATGAGACTGATCCAGAGAAGATTCAGAAGTTAAAAGATGATGCGGCAAGGGGACTCATAAACC
ACATTCTATACGAATCTGAGCGACTGTCGGGTCGAAAATTCAGCCAAAGTTCT

mRNA sequence

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Protein sequence

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MPSLQTALPPELANNVIRLYRECLRRAKYIGHQQHNTELVVSMVRQQFRKNMHETDPEKIQKLKDDAARGLINHILYESERLSGRKFSQSS

MS008219 (gene) of Bitter gourd (TR) v1 genome