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MS008221 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS008221
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzf-RVT domain-containing protein
Genome locationscaffold45:389514..389857
RNA-Seq ExpressionMS008221
SyntenyMS008221
Gene Ontology termsGO:0110165 - cellular anatomical structure (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN62833.1 hypothetical protein VITISV_012130 [Vitis vinifera]4.5e-1537.29Show/hide
Query:  PFWCVLCRKNREDAAHLFSFCPFVAACWWDLFNTFNLSWVFPNKAHMLLFNSFCEDFKG-----QAKIRWSSAVLALLWRVQHERNTKIFQDGASDRDTF
        P WC+LC+ N E   HLF  CP     W  LFN   + WV P     +L  S    FKG     + KI W  A L L+W V  ERN +IF+D     +  
Subjt:  PFWCVLCRKNREDAAHLFSFCPFVAACWWDLFNTFNLSWVFPNKAHMLLFNSFCEDFKG-----QAKIRWSSAVLALLWRVQHERNTKIFQDGASDRDTF

Query:  WILVKIFASSWSSLCSPF
        W L++ ++S W+S    F
Subjt:  WILVKIFASSWSSLCSPF

RVW19678.1 Structural maintenance of chromosomes protein 3, partial [Vitis vinifera]4.5e-1537.29Show/hide
Query:  PFWCVLCRKNREDAAHLFSFCPFVAACWWDLFNTFNLSWVFPNKAHMLLFNSFCEDFKG-----QAKIRWSSAVLALLWRVQHERNTKIFQDGASDRDTF
        P WC+LC+ N E   HLF  CP     W  LFN   + WV P     +L  S    FKG     + KI W  A L L+W V  ERN +IF+D     +  
Subjt:  PFWCVLCRKNREDAAHLFSFCPFVAACWWDLFNTFNLSWVFPNKAHMLLFNSFCEDFKG-----QAKIRWSSAVLALLWRVQHERNTKIFQDGASDRDTF

Query:  WILVKIFASSWSSLCSPF
        W L++ ++S W+S    F
Subjt:  WILVKIFASSWSSLCSPF

RVW41830.1 hypothetical protein CK203_108403 [Vitis vinifera]2.0e-1537.29Show/hide
Query:  PFWCVLCRKNREDAAHLFSFCPFVAACWWDLFNTFNLSWVFPNKAHMLLFNSFCEDFKG-----QAKIRWSSAVLALLWRVQHERNTKIFQDGASDRDTF
        P WC+LC++N E   HLF  CP     W  LFN   + WV P     +L  S    FKG     + KI W  A L L+W V  ERN +IF+D     +  
Subjt:  PFWCVLCRKNREDAAHLFSFCPFVAACWWDLFNTFNLSWVFPNKAHMLLFNSFCEDFKG-----QAKIRWSSAVLALLWRVQHERNTKIFQDGASDRDTF

Query:  WILVKIFASSWSSLCSPF
        W L++ ++S W+S    F
Subjt:  WILVKIFASSWSSLCSPF

RVW61049.1 putative ribonuclease H protein [Vitis vinifera]2.0e-1537.29Show/hide
Query:  PFWCVLCRKNREDAAHLFSFCPFVAACWWDLFNTFNLSWVFPNKAHMLLFNSFCEDFKG-----QAKIRWSSAVLALLWRVQHERNTKIFQDGASDRDTF
        P WC+LC++N E   HLF  CP     W  LFN   + WV P     +L  S    FKG     + KI W  A L L+W V  ERN +IF+D     +  
Subjt:  PFWCVLCRKNREDAAHLFSFCPFVAACWWDLFNTFNLSWVFPNKAHMLLFNSFCEDFKG-----QAKIRWSSAVLALLWRVQHERNTKIFQDGASDRDTF

Query:  WILVKIFASSWSSLCSPF
        W L++ ++S W+S    F
Subjt:  WILVKIFASSWSSLCSPF

RVX20160.1 Protein RETICULATA, chloroplastic [Vitis vinifera]1.6e-1538.14Show/hide
Query:  PFWCVLCRKNREDAAHLFSFCPFVAACWWDLFNTFNLSWVFPNKAHMLLFNSFCEDFKG-----QAKIRWSSAVLALLWRVQHERNTKIFQDGASDRDTF
        P WC+LC+ N E   HLF  CP     W  LFN   +SWV P     +L  S    FKG     + KI W  A L L+W V  ERN +IF+D     +  
Subjt:  PFWCVLCRKNREDAAHLFSFCPFVAACWWDLFNTFNLSWVFPNKAHMLLFNSFCEDFKG-----QAKIRWSSAVLALLWRVQHERNTKIFQDGASDRDTF

Query:  WILVKIFASSWSSLCSPF
        W L++ ++S W+S    F
Subjt:  WILVKIFASSWSSLCSPF

TrEMBL top hitse value%identityAlignment
A0A438E2J1 zf-RVT domain-containing protein9.8e-1637.29Show/hide
Query:  PFWCVLCRKNREDAAHLFSFCPFVAACWWDLFNTFNLSWVFPNKAHMLLFNSFCEDFKG-----QAKIRWSSAVLALLWRVQHERNTKIFQDGASDRDTF
        P WC+LC++N E   HLF  CP     W  LFN   + WV P     +L  S    FKG     + KI W  A L L+W V  ERN +IF+D     +  
Subjt:  PFWCVLCRKNREDAAHLFSFCPFVAACWWDLFNTFNLSWVFPNKAHMLLFNSFCEDFKG-----QAKIRWSSAVLALLWRVQHERNTKIFQDGASDRDTF

Query:  WILVKIFASSWSSLCSPF
        W L++ ++S W+S    F
Subjt:  WILVKIFASSWSSLCSPF

A0A438FM03 Putative ribonuclease H protein9.8e-1637.29Show/hide
Query:  PFWCVLCRKNREDAAHLFSFCPFVAACWWDLFNTFNLSWVFPNKAHMLLFNSFCEDFKG-----QAKIRWSSAVLALLWRVQHERNTKIFQDGASDRDTF
        P WC+LC++N E   HLF  CP     W  LFN   + WV P     +L  S    FKG     + KI W  A L L+W V  ERN +IF+D     +  
Subjt:  PFWCVLCRKNREDAAHLFSFCPFVAACWWDLFNTFNLSWVFPNKAHMLLFNSFCEDFKG-----QAKIRWSSAVLALLWRVQHERNTKIFQDGASDRDTF

Query:  WILVKIFASSWSSLCSPF
        W L++ ++S W+S    F
Subjt:  WILVKIFASSWSSLCSPF

A0A438GEJ4 Exocyst subunit Exo70 family protein8.3e-1536.44Show/hide
Query:  PFWCVLCRKNREDAAHLFSFCPFVAACWWDLFNTFNLSWVFPNKAHMLLFNSFCEDFKG-----QAKIRWSSAVLALLWRVQHERNTKIFQDGASDRDTF
        P WC+LC++N E   HLF  CP     W  LFN   + WV P     +L  S    F+G     + KI W  A L L+W V  ERN +IF+D     +  
Subjt:  PFWCVLCRKNREDAAHLFSFCPFVAACWWDLFNTFNLSWVFPNKAHMLLFNSFCEDFKG-----QAKIRWSSAVLALLWRVQHERNTKIFQDGASDRDTF

Query:  WILVKIFASSWSSLCSPF
        W L+  ++S W+S    F
Subjt:  WILVKIFASSWSSLCSPF

A0A438GJ06 Flowering time control protein FY2.2e-1536.44Show/hide
Query:  PFWCVLCRKNREDAAHLFSFCPFVAACWWDLFNTFNLSWVFPNKAHMLLFNSFCEDFKG-----QAKIRWSSAVLALLWRVQHERNTKIFQDGASDRDTF
        P WC+LC++N E   HLF  CP     W  LFN   + WV P     +L  S    F+G     + KI W  A L L+W V  ERN +IF+D     +  
Subjt:  PFWCVLCRKNREDAAHLFSFCPFVAACWWDLFNTFNLSWVFPNKAHMLLFNSFCEDFKG-----QAKIRWSSAVLALLWRVQHERNTKIFQDGASDRDTF

Query:  WILVKIFASSWSSLCSPF
        W L++ ++S W+S    F
Subjt:  WILVKIFASSWSSLCSPF

A5BZG3 Reverse transcriptase domain-containing protein8.3e-1536.44Show/hide
Query:  PFWCVLCRKNREDAAHLFSFCPFVAACWWDLFNTFNLSWVFPNKAHMLLFNSFCEDFKG-----QAKIRWSSAVLALLWRVQHERNTKIFQDGASDRDTF
        P WC+LC++N E   HLF  CP     W  LFN   + WV P     +L  S    F+G     + KI W  A L L+W V  ERN +IF+D     +  
Subjt:  PFWCVLCRKNREDAAHLFSFCPFVAACWWDLFNTFNLSWVFPNKAHMLLFNSFCEDFKG-----QAKIRWSSAVLALLWRVQHERNTKIFQDGASDRDTF

Query:  WILVKIFASSWSSLCSPF
        W L+  ++S W+S    F
Subjt:  WILVKIFASSWSSLCSPF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTTCCCTTTTGGTGTGTTTTGTGTAGAAAGAATAGAGAAGATGCTGCTCATCTCTTTTCTTTCTGCCCTTTTGTAGCAGCCTGTTGGTGGGACTTGTTCAACACTTTCAA
TCTCAGCTGGGTGTTTCCTAACAAGGCTCATATGCTTTTGTTCAACTCATTTTGTGAAGATTTCAAGGGTCAGGCTAAAATCCGTTGGTCAAGTGCAGTGCTGGCTTTGT
TATGGAGAGTGCAGCATGAAAGAAACACTAAAATATTTCAAGATGGCGCATCGGATAGAGACACCTTTTGGATTCTTGTCAAAATCTTTGCTTCCTCTTGGTCCTCTTTG
TGCTCTCCTTTT
mRNA sequenceShow/hide mRNA sequence
TTTCCCTTTTGGTGTGTTTTGTGTAGAAAGAATAGAGAAGATGCTGCTCATCTCTTTTCTTTCTGCCCTTTTGTAGCAGCCTGTTGGTGGGACTTGTTCAACACTTTCAA
TCTCAGCTGGGTGTTTCCTAACAAGGCTCATATGCTTTTGTTCAACTCATTTTGTGAAGATTTCAAGGGTCAGGCTAAAATCCGTTGGTCAAGTGCAGTGCTGGCTTTGT
TATGGAGAGTGCAGCATGAAAGAAACACTAAAATATTTCAAGATGGCGCATCGGATAGAGACACCTTTTGGATTCTTGTCAAAATCTTTGCTTCCTCTTGGTCCTCTTTG
TGCTCTCCTTTT
Protein sequenceShow/hide protein sequence
FPFWCVLCRKNREDAAHLFSFCPFVAACWWDLFNTFNLSWVFPNKAHMLLFNSFCEDFKGQAKIRWSSAVLALLWRVQHERNTKIFQDGASDRDTFWILVKIFASSWSSL
CSPF