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MS008230 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS008230
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionER membrane protein complex subunit 6
Genome locationscaffold45:458899..459557
RNA-Seq ExpressionMS008230
SyntenyMS008230
Gene Ontology termsGO:0000045 - autophagosome assembly (biological process)
GO:0072546 - ER membrane protein complex (cellular component)
InterPro domainsIPR008504 - ER membrane protein complex subunit 6
IPR029008 - Rab5-interacting protein family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597582.1 ER membrane protein complex subunit 6, partial [Cucurbita argyrosperma subsp. sororia]1.9e-4287.85Show/hide
Query:  MAGYSSAASEKKSTEAADDVPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFILYFLVMAITSLGLAAKAGFSFHSYFESWNQILLDGFLS
        MAGYSS ASEKKS++A DD+PI NAENLQNNLKIIYYSRTFLSIIGGVIAGILGFT LTGFI YFLVMAITS+GLAAKAGFSFHSYFESWNQILLDGFLS
Subjt:  MAGYSSAASEKKSTEAADDVPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFILYFLVMAITSLGLAAKAGFSFHSYFESWNQILLDGFLS

Query:  GLMVCII
        GLM  ++
Subjt:  GLMVCII

KAG7029026.1 ER membrane protein complex subunit 6, partial [Cucurbita argyrosperma subsp. argyrosperma]2.0e-4790.99Show/hide
Query:  MAGYSSAASEKKSTEAADDVPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFILYFLVMAITSLGLAAKAGFSFHSYFESWNQILLDGFLS
        MAGYSS ASEKKS++A DD+PI NAENLQNNLKIIYYSRTFLSIIGGVIAGILGFT LTGFI YFLVMAITS+GLAAKAGFSFHSYFESWNQILLDGFLS
Subjt:  MAGYSSAASEKKSTEAADDVPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFILYFLVMAITSLGLAAKAGFSFHSYFESWNQILLDGFLS

Query:  GLMVCIICSYF
        GLMVCI+CSYF
Subjt:  GLMVCIICSYF

XP_022137968.1 ER membrane protein complex subunit 6 [Momordica charantia]1.3e-4696.26Show/hide
Query:  MAGYSSAASEKKSTEAADDVPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFILYFLVMAITSLGLAAKAGFSFHSYFESWNQILLDGFLS
        MAGYSSAASEKKSTEAADDVPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFILYFLVMAITSLGLAAKAGFSFHSYFESWNQILLDGFLS
Subjt:  MAGYSSAASEKKSTEAADDVPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFILYFLVMAITSLGLAAKAGFSFHSYFESWNQILLDGFLS

Query:  GLMVCII
        GLM  ++
Subjt:  GLMVCII

XP_022937062.1 ER membrane protein complex subunit 6 [Cucurbita moschata]1.9e-4287.85Show/hide
Query:  MAGYSSAASEKKSTEAADDVPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFILYFLVMAITSLGLAAKAGFSFHSYFESWNQILLDGFLS
        MAGYSS ASEKKS++A DD+PI NAENLQNNLKIIYYSRTFLSIIGGVIAGILGFT LTGFI YFLVMAITS+GLAAKAGFSFHSYFESWNQILLDGFLS
Subjt:  MAGYSSAASEKKSTEAADDVPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFILYFLVMAITSLGLAAKAGFSFHSYFESWNQILLDGFLS

Query:  GLMVCII
        GLM  ++
Subjt:  GLMVCII

XP_022972030.1 ER membrane protein complex subunit 6 [Cucurbita maxima]3.2e-4287.85Show/hide
Query:  MAGYSSAASEKKSTEAADDVPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFILYFLVMAITSLGLAAKAGFSFHSYFESWNQILLDGFLS
        MAGYSS ASEKKS++A DD+PI NAENLQNNLKIIYYSRTFLSIIGGVIAGILGFT LTGFI YFLVMAITS+GLAAKAGFSFHSYFESWNQILLDGFLS
Subjt:  MAGYSSAASEKKSTEAADDVPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFILYFLVMAITSLGLAAKAGFSFHSYFESWNQILLDGFLS

Query:  GLMVCII
        GLM  ++
Subjt:  GLMVCII

TrEMBL top hitse value%identityAlignment
A0A0A0LZ06 ER membrane protein complex subunit 65.0e-4185.05Show/hide
Query:  MAGYSSAASEKKSTEAADDVPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFILYFLVMAITSLGLAAKAGFSFHSYFESWNQILLDGFLS
        MAGYSS AS+KKS++ ADD+PIFNAENLQNNLKIIYYSRTFLSIIGGVIAG+LGFTGLTGFI YFLVMAITS+ LAAKAGFSFHSYFES NQIL DGFLS
Subjt:  MAGYSSAASEKKSTEAADDVPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFILYFLVMAITSLGLAAKAGFSFHSYFESWNQILLDGFLS

Query:  GLMVCII
        GLM  ++
Subjt:  GLMVCII

A0A1S3BQB0 ER membrane protein complex subunit 62.3e-4185.98Show/hide
Query:  MAGYSSAASEKKSTEAADDVPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFILYFLVMAITSLGLAAKAGFSFHSYFESWNQILLDGFLS
        MAGYSS AS+KKS+++ADD+PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFI YFLVMAITS+ LAAKAGFSFHSYFES NQILLDGFL 
Subjt:  MAGYSSAASEKKSTEAADDVPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFILYFLVMAITSLGLAAKAGFSFHSYFESWNQILLDGFLS

Query:  GLMVCII
        GLM  ++
Subjt:  GLMVCII

A0A6J1CBS9 ER membrane protein complex subunit 66.1e-4796.26Show/hide
Query:  MAGYSSAASEKKSTEAADDVPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFILYFLVMAITSLGLAAKAGFSFHSYFESWNQILLDGFLS
        MAGYSSAASEKKSTEAADDVPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFILYFLVMAITSLGLAAKAGFSFHSYFESWNQILLDGFLS
Subjt:  MAGYSSAASEKKSTEAADDVPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFILYFLVMAITSLGLAAKAGFSFHSYFESWNQILLDGFLS

Query:  GLMVCII
        GLM  ++
Subjt:  GLMVCII

A0A6J1FFH8 ER membrane protein complex subunit 69.2e-4387.85Show/hide
Query:  MAGYSSAASEKKSTEAADDVPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFILYFLVMAITSLGLAAKAGFSFHSYFESWNQILLDGFLS
        MAGYSS ASEKKS++A DD+PI NAENLQNNLKIIYYSRTFLSIIGGVIAGILGFT LTGFI YFLVMAITS+GLAAKAGFSFHSYFESWNQILLDGFLS
Subjt:  MAGYSSAASEKKSTEAADDVPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFILYFLVMAITSLGLAAKAGFSFHSYFESWNQILLDGFLS

Query:  GLMVCII
        GLM  ++
Subjt:  GLMVCII

A0A6J1I7D9 ER membrane protein complex subunit 61.6e-4287.85Show/hide
Query:  MAGYSSAASEKKSTEAADDVPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFILYFLVMAITSLGLAAKAGFSFHSYFESWNQILLDGFLS
        MAGYSS ASEKKS++A DD+PI NAENLQNNLKIIYYSRTFLSIIGGVIAGILGFT LTGFI YFLVMAITS+GLAAKAGFSFHSYFESWNQILLDGFLS
Subjt:  MAGYSSAASEKKSTEAADDVPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFILYFLVMAITSLGLAAKAGFSFHSYFESWNQILLDGFLS

Query:  GLMVCII
        GLM  ++
Subjt:  GLMVCII

SwissProt top hitse value%identityAlignment
Q3ZCG8 ER membrane protein complex subunit 64.6e-0735.63Show/hide
Query:  PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFILYFLVMAITSLGLAAKAGFSFHSYFESWNQILLDGFLSGLMVCII
        P  +   ++ N  ++ Y RT +S + G  AGILG TGL GFI Y L   + SL L  KA   ++ YF+S   +   G + GL   ++
Subjt:  PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFILYFLVMAITSLGLAAKAGFSFHSYFESWNQILLDGFLSGLMVCII

Q68EU8 ER membrane protein complex subunit 63.5e-0737.5Show/hide
Query:  LQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFILYFLVMAITSLGLAAKAGFSFHSYFESWNQILLDGFLSGLMVCII
        ++ N  ++ Y RT +S + G  AGILG T L GFI YFL   + SL L  K+G  ++ YF+S   +   G + GL   ++
Subjt:  LQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFILYFLVMAITSLGLAAKAGFSFHSYFESWNQILLDGFLSGLMVCII

Q6GLC5 ER membrane protein complex subunit 62.7e-0737.5Show/hide
Query:  LQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFILYFLVMAITSLGLAAKAGFSFHSYFESWNQILLDGFLSGLMVCII
        ++ N  ++ Y RT +S + G  AGILG T L GFI YFL   + SL L  K+G  ++ YF+S   +   G + GL   ++
Subjt:  LQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFILYFLVMAITSLGLAAKAGFSFHSYFESWNQILLDGFLSGLMVCII

Q9BV81 ER membrane protein complex subunit 64.1e-0836.78Show/hide
Query:  PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFILYFLVMAITSLGLAAKAGFSFHSYFESWNQILLDGFLSGLMVCII
        P  +   ++ N  ++ Y RT +S + G  AGILG TGL GFI Y L   + SL L  KAG  ++ YF+S   +   G + GL   ++
Subjt:  PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFILYFLVMAITSLGLAAKAGFSFHSYFESWNQILLDGFLSGLMVCII

Q9CQW0 ER membrane protein complex subunit 64.1e-0836.78Show/hide
Query:  PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFILYFLVMAITSLGLAAKAGFSFHSYFESWNQILLDGFLSGLMVCII
        P  +   ++ N  ++ Y RT +S + G  AGILG TGL GFI Y L   + SL L  KAG  ++ YF+S   +   G + GL   ++
Subjt:  PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFILYFLVMAITSLGLAAKAGFSFHSYFESWNQILLDGFLSGLMVCII

Arabidopsis top hitse value%identityAlignment
AT5G49540.1 Rab5-interacting family protein1.4e-3064Show/hide
Query:  ASEKKSTEAADDVPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFILYFLVMAITSLGLAAKAGFSFHSYFESWNQILLDGFLSGLMVCII
        +SEK+S +   D+P F+AENLQNNLK+I  SRTFLSII GV+AGI+GF GL GF+ YF+VM ITS+GL AKAGFS   YF+SWN++L DGFL GLM  ++
Subjt:  ASEKKSTEAADDVPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFILYFLVMAITSLGLAAKAGFSFHSYFESWNQILLDGFLSGLMVCII


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGGTTATTCCTCCGCTGCTTCTGAGAAGAAATCGACTGAGGCGGCCGACGATGTACCGATCTTCAATGCTGAAAATTTGCAAAACAACTTGAAGATTATATATTA
CAGCCGGACGTTTTTGTCTATAATTGGTGGAGTAATTGCTGGAATTTTGGGATTCACAGGCCTGACTGGATTTATATTATATTTCCTAGTCATGGCAATTACTTCACTTG
GACTTGCAGCTAAGGCTGGATTTTCTTTTCATTCATATTTTGAAAGCTGGAACCAGATTCTACTTGATGGCTTTCTGAGTGGGCTTATGGTATGCATCATCTGTTCTTAT
TTT
mRNA sequenceShow/hide mRNA sequence
ATGGCTGGTTATTCCTCCGCTGCTTCTGAGAAGAAATCGACTGAGGCGGCCGACGATGTACCGATCTTCAATGCTGAAAATTTGCAAAACAACTTGAAGATTATATATTA
CAGCCGGACGTTTTTGTCTATAATTGGTGGAGTAATTGCTGGAATTTTGGGATTCACAGGCCTGACTGGATTTATATTATATTTCCTAGTCATGGCAATTACTTCACTTG
GACTTGCAGCTAAGGCTGGATTTTCTTTTCATTCATATTTTGAAAGCTGGAACCAGATTCTACTTGATGGCTTTCTGAGTGGGCTTATGGTATGCATCATCTGTTCTTAT
TTT
Protein sequenceShow/hide protein sequence
MAGYSSAASEKKSTEAADDVPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFILYFLVMAITSLGLAAKAGFSFHSYFESWNQILLDGFLSGLMVCIICSY
F