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MS008231 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS008231
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTransmembrane protein
Genome locationscaffold45:467897..468145
RNA-Seq ExpressionMS008231
SyntenyMS008231
Gene Ontology termsGO:0016070 - RNA metabolic process (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0016740 - transferase activity (molecular function)
GO:0097159 - organic cyclic compound binding (molecular function)
GO:1901363 - heterocyclic compound binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OAY27631.1 hypothetical protein MANES_15G002400v8 [Manihot esculenta]9.3e-1047.56Show/hide
Query:  MSRRWFPPSFRLPEFRLSLLPASFSWPEFNFFNFGIDRSSPSIRWFNFSIIDDMCWALIAVIESLVLITMLCCFFLCCGFTL
        M  RW+  + R PEF  SL  + F WPEF+F       S  S RWF+FS IDD+ W  + V+ES+ L+ MLC FF+ CG TL
Subjt:  MSRRWFPPSFRLPEFRLSLLPASFSWPEFNFFNFGIDRSSPSIRWFNFSIIDDMCWALIAVIESLVLITMLCCFFLCCGFTL

OVA16736.1 hypothetical protein BVC80_1543g187 [Macleaya cordata]3.8e-1150Show/hide
Query:  MSRRWFPPSFRLPEFRLSLLPASFSWPEFNFFNFGIDRS-SPSIRW--FNFSIIDDMCWALIAVIESLVLITMLCCFFLCCGFT
        M RRW    FRLP F  SL P+ F WP FNF  F    + +  +RW  F+FSI+D++ W+ I  IESLVL++MLC FF+ CG T
Subjt:  MSRRWFPPSFRLPEFRLSLLPASFSWPEFNFFNFGIDRS-SPSIRW--FNFSIIDDMCWALIAVIESLVLITMLCCFFLCCGFT

PON64912.1 Transmembrane protein [Parasponia andersonii]1.7e-1148.75Show/hide
Query:  RRWFPPSFRLPEFRLSLLPASFSWPEFNFFNFGIDRSSPSIRWFNFSIIDDMCWALIAVIESLVLITMLCCFFLCCGFTL
        R W+  SFR PEF LSL  + F WP+F+        S  S RWF+FS++DD+ W  ++V+ESL L++MLC FF+ CG TL
Subjt:  RRWFPPSFRLPEFRLSLLPASFSWPEFNFFNFGIDRSSPSIRWFNFSIIDDMCWALIAVIESLVLITMLCCFFLCCGFTL

PON93146.1 Transmembrane protein [Trema orientale]1.1e-1047.5Show/hide
Query:  RRWFPPSFRLPEFRLSLLPASFSWPEFNFFNFGIDRSSPSIRWFNFSIIDDMCWALIAVIESLVLITMLCCFFLCCGFTL
        R W+  +FR PEF  SL  + F WP+F+        S  S RWF+FSI+DD+ W  ++V+ESL L++MLC FF+ CG TL
Subjt:  RRWFPPSFRLPEFRLSLLPASFSWPEFNFFNFGIDRSSPSIRWFNFSIIDDMCWALIAVIESLVLITMLCCFFLCCGFTL

XP_021291799.1 uncharacterized protein LOC110422276 [Herrania umbratica]3.2e-1044.58Show/hide
Query:  EMSRRWFPPSFRLPEFRLSLLPASFSWPEFNFFNFGIDRSSPSIRWFNFSIIDDMCWALIAVIESLVLITMLCCFFLCCGFTL
        +M   W+   FR P+F  SL  + F WP+FN        S  S RW++FSI+DD+ W  + V+ES  L+ MLC FFL CG TL
Subjt:  EMSRRWFPPSFRLPEFRLSLLPASFSWPEFNFFNFGIDRSSPSIRWFNFSIIDDMCWALIAVIESLVLITMLCCFFLCCGFTL

TrEMBL top hitse value%identityAlignment
A0A200R1Z0 Uncharacterized protein1.8e-1150Show/hide
Query:  MSRRWFPPSFRLPEFRLSLLPASFSWPEFNFFNFGIDRS-SPSIRW--FNFSIIDDMCWALIAVIESLVLITMLCCFFLCCGFT
        M RRW    FRLP F  SL P+ F WP FNF  F    + +  +RW  F+FSI+D++ W+ I  IESLVL++MLC FF+ CG T
Subjt:  MSRRWFPPSFRLPEFRLSLLPASFSWPEFNFFNFGIDRS-SPSIRW--FNFSIIDDMCWALIAVIESLVLITMLCCFFLCCGFT

A0A2C9UBR8 Uncharacterized protein4.5e-1047.56Show/hide
Query:  MSRRWFPPSFRLPEFRLSLLPASFSWPEFNFFNFGIDRSSPSIRWFNFSIIDDMCWALIAVIESLVLITMLCCFFLCCGFTL
        M  RW+  + R PEF  SL  + F WPEF+F       S  S RWF+FS IDD+ W  + V+ES+ L+ MLC FF+ CG TL
Subjt:  MSRRWFPPSFRLPEFRLSLLPASFSWPEFNFFNFGIDRSSPSIRWFNFSIIDDMCWALIAVIESLVLITMLCCFFLCCGFTL

A0A2P5CV46 Transmembrane protein8.2e-1248.75Show/hide
Query:  RRWFPPSFRLPEFRLSLLPASFSWPEFNFFNFGIDRSSPSIRWFNFSIIDDMCWALIAVIESLVLITMLCCFFLCCGFTL
        R W+  SFR PEF LSL  + F WP+F+        S  S RWF+FS++DD+ W  ++V+ESL L++MLC FF+ CG TL
Subjt:  RRWFPPSFRLPEFRLSLLPASFSWPEFNFFNFGIDRSSPSIRWFNFSIIDDMCWALIAVIESLVLITMLCCFFLCCGFTL

A0A2P5F5S8 Transmembrane protein5.3e-1147.5Show/hide
Query:  RRWFPPSFRLPEFRLSLLPASFSWPEFNFFNFGIDRSSPSIRWFNFSIIDDMCWALIAVIESLVLITMLCCFFLCCGFTL
        R W+  +FR PEF  SL  + F WP+F+        S  S RWF+FSI+DD+ W  ++V+ESL L++MLC FF+ CG TL
Subjt:  RRWFPPSFRLPEFRLSLLPASFSWPEFNFFNFGIDRSSPSIRWFNFSIIDDMCWALIAVIESLVLITMLCCFFLCCGFTL

A0A6J1AZH6 uncharacterized protein LOC1104222761.5e-1044.58Show/hide
Query:  EMSRRWFPPSFRLPEFRLSLLPASFSWPEFNFFNFGIDRSSPSIRWFNFSIIDDMCWALIAVIESLVLITMLCCFFLCCGFTL
        +M   W+   FR P+F  SL  + F WP+FN        S  S RW++FSI+DD+ W  + V+ES  L+ MLC FFL CG TL
Subjt:  EMSRRWFPPSFRLPEFRLSLLPASFSWPEFNFFNFGIDRSSPSIRWFNFSIIDDMCWALIAVIESLVLITMLCCFFLCCGFTL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G49525.1 unknown protein4.3e-0539.71Show/hide
Query:  SFSWPEFNFFNFGIDRSSPSIRW--------FNFSIIDDMCWALIAVIESLVLITMLCCFFLCCGFTL
        +F WPE N        SS S  W         + SI+DD+ W+ +++IESL +   +CCFFL CG TL
Subjt:  SFSWPEFNFFNFGIDRSSPSIRW--------FNFSIIDDMCWALIAVIESLVLITMLCCFFLCCGFTL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GAGATGAGCCGGAGATGGTTCCCGCCAAGTTTCAGGTTGCCGGAATTCCGACTTTCGCTGCTGCCGGCATCTTTCAGTTGGCCGGAGTTCAATTTTTTTAACTTCGGCAT
CGACCGGAGCTCTCCGAGCATCAGGTGGTTTAATTTTTCGATAATCGATGATATGTGTTGGGCGCTCATCGCCGTCATCGAATCCCTTGTTCTGATTACAATGTTGTGCT
GCTTCTTCTTGTGCTGCGGTTTTACTCTC
mRNA sequenceShow/hide mRNA sequence
GAGATGAGCCGGAGATGGTTCCCGCCAAGTTTCAGGTTGCCGGAATTCCGACTTTCGCTGCTGCCGGCATCTTTCAGTTGGCCGGAGTTCAATTTTTTTAACTTCGGCAT
CGACCGGAGCTCTCCGAGCATCAGGTGGTTTAATTTTTCGATAATCGATGATATGTGTTGGGCGCTCATCGCCGTCATCGAATCCCTTGTTCTGATTACAATGTTGTGCT
GCTTCTTCTTGTGCTGCGGTTTTACTCTC
Protein sequenceShow/hide protein sequence
EMSRRWFPPSFRLPEFRLSLLPASFSWPEFNFFNFGIDRSSPSIRWFNFSIIDDMCWALIAVIESLVLITMLCCFFLCCGFTL