; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS008247 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS008247
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPlant protein of unknown function (DUF247)
Genome locationscaffold45:608938..609384
RNA-Seq ExpressionMS008247
SyntenyMS008247
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR004158 - Protein of unknown function DUF247, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6582174.1 UPF0481 protein, partial [Cucurbita argyrosperma subsp. sororia]2.5e-5874.5Show/hide
Query:  IFKVPDEISIDNREVFVPAKVSIGPFHHGAPHLESMEDLKWNYLCAFLKHNPSVGLDDLLEFVAKSESRVRKCYEVEFHDLDSQKFARMMVLDCCFVLEL
        IF+ P+EISI++R VFVP+KVSIGPFHHGAPHLESME+LKW YL AFLK+NPSV L  L+E V KSESR+RKCYE EF+  DS KF+++M+LDCCF+LEL
Subjt:  IFKVPDEISIDNREVFVPAKVSIGPFHHGAPHLESMEDLKWNYLCAFLKHNPSVGLDDLLEFVAKSESRVRKCYEVEFHDLDSQKFARMMVLDCCFVLEL

Query:  LLRFSIKRLKRRNDPVFTTPGLLLDLKSDLILLENQIPYFLLREVYEKV
        LLRFS KRL+RRND VFTTPGLL DL+ DL+LLENQIPYFLL++VYE V
Subjt:  LLRFSIKRLKRRNDPVFTTPGLLLDLKSDLILLENQIPYFLLREVYEKV

XP_022138112.1 UPF0481 protein At3g47200-like [Momordica charantia]8.9e-80100Show/hide
Query:  IFKVPDEISIDNREVFVPAKVSIGPFHHGAPHLESMEDLKWNYLCAFLKHNPSVGLDDLLEFVAKSESRVRKCYEVEFHDLDSQKFARMMVLDCCFVLEL
        IFKVPDEISIDNREVFVPAKVSIGPFHHGAPHLESMEDLKWNYLCAFLKHNPSVGLDDLLEFVAKSESRVRKCYEVEFHDLDSQKFARMMVLDCCFVLEL
Subjt:  IFKVPDEISIDNREVFVPAKVSIGPFHHGAPHLESMEDLKWNYLCAFLKHNPSVGLDDLLEFVAKSESRVRKCYEVEFHDLDSQKFARMMVLDCCFVLEL

Query:  LLRFSIKRLKRRNDPVFTTPGLLLDLKSDLILLENQIPYFLLREVYEKV
        LLRFSIKRLKRRNDPVFTTPGLLLDLKSDLILLENQIPYFLLREVYEKV
Subjt:  LLRFSIKRLKRRNDPVFTTPGLLLDLKSDLILLENQIPYFLLREVYEKV

XP_022955709.1 UPF0481 protein At3g47200-like [Cucurbita moschata]1.1e-5875.17Show/hide
Query:  IFKVPDEISIDNREVFVPAKVSIGPFHHGAPHLESMEDLKWNYLCAFLKHNPSVGLDDLLEFVAKSESRVRKCYEVEFHDLDSQKFARMMVLDCCFVLEL
        IF+ P+EISI++R VFVPAKVSIGPFHHGAPHLESME+LKW YL AFLK+NPSV L  L+E V KSESR+RKCYE EF+  DS KF+++M+LDCCF+LEL
Subjt:  IFKVPDEISIDNREVFVPAKVSIGPFHHGAPHLESMEDLKWNYLCAFLKHNPSVGLDDLLEFVAKSESRVRKCYEVEFHDLDSQKFARMMVLDCCFVLEL

Query:  LLRFSIKRLKRRNDPVFTTPGLLLDLKSDLILLENQIPYFLLREVYEKV
        LLRFS KRL+RRND VFTTPGLL DL+ DL+LLENQIPYFLL++VYE V
Subjt:  LLRFSIKRLKRRNDPVFTTPGLLLDLKSDLILLENQIPYFLLREVYEKV

XP_023526431.1 UPF0481 protein At3g47200-like [Cucurbita pepo subsp. pepo]1.1e-5875.17Show/hide
Query:  IFKVPDEISIDNREVFVPAKVSIGPFHHGAPHLESMEDLKWNYLCAFLKHNPSVGLDDLLEFVAKSESRVRKCYEVEFHDLDSQKFARMMVLDCCFVLEL
        IF+ P+EISI++R VFVPAKVSIGPFHHGAPHLESME+LKW YL AFLK+NPSV L  L+E V KSESR+RKCYE EF+  DS KF+++M+LDCCF+LEL
Subjt:  IFKVPDEISIDNREVFVPAKVSIGPFHHGAPHLESMEDLKWNYLCAFLKHNPSVGLDDLLEFVAKSESRVRKCYEVEFHDLDSQKFARMMVLDCCFVLEL

Query:  LLRFSIKRLKRRNDPVFTTPGLLLDLKSDLILLENQIPYFLLREVYEKV
        LLRFS KRL+RRND VFTTPGLL DL+ DL+LLENQIPYFLL++VYE V
Subjt:  LLRFSIKRLKRRNDPVFTTPGLLLDLKSDLILLENQIPYFLLREVYEKV

XP_038880915.1 UPF0481 protein At3g47200-like [Benincasa hispida]1.3e-5974.5Show/hide
Query:  IFKVPDEISIDNREVFVPAKVSIGPFHHGAPHLESMEDLKWNYLCAFLKHNPSVGLDDLLEFVAKSESRVRKCYEVEFHDLDSQKFARMMVLDCCFVLEL
        IF+ P++ISI+++ VFVPAKVSIGPFHHGAPHLE ME+LKW YL  FLKHNPS+ LDDL+E V KSESR+RKCYE EF+DLDS KF++MM+LDCCF+LEL
Subjt:  IFKVPDEISIDNREVFVPAKVSIGPFHHGAPHLESMEDLKWNYLCAFLKHNPSVGLDDLLEFVAKSESRVRKCYEVEFHDLDSQKFARMMVLDCCFVLEL

Query:  LLRFSIKRLKRRNDPVFTTPGLLLDLKSDLILLENQIPYFLLREVYEKV
        LLR+S KR +R NDPVF TPGLL DL+ DL+LLENQIPYFLL EVYE V
Subjt:  LLRFSIKRLKRRNDPVFTTPGLLLDLKSDLILLENQIPYFLLREVYEKV

TrEMBL top hitse value%identityAlignment
A0A1S3AY98 UPF0481 protein At3g47200-like2.2e-5569.8Show/hide
Query:  IFKVPDEISIDNREVFVPAKVSIGPFHHGAPHLESMEDLKWNYLCAFLKHNPSVGLDDLLEFVAKSESRVRKCYEVEFHDLDSQKFARMMVLDCCFVLEL
        IFK P EI+I+ R VFVPAKVSIGPFHHGA HL+S+E+LKW YL  FLKHN S+ L DL++ V KSESR++KCYE +F  LD  +F+ +M+LDCCF+LEL
Subjt:  IFKVPDEISIDNREVFVPAKVSIGPFHHGAPHLESMEDLKWNYLCAFLKHNPSVGLDDLLEFVAKSESRVRKCYEVEFHDLDSQKFARMMVLDCCFVLEL

Query:  LLRFSIKRLKRRNDPVFTTPGLLLDLKSDLILLENQIPYFLLREVYEKV
        LLR+S +R KRRNDPVFTTPGLL D+K DL+LLENQIPYFLL E+YEKV
Subjt:  LLRFSIKRLKRRNDPVFTTPGLLLDLKSDLILLENQIPYFLLREVYEKV

A0A5D3CWE5 UPF0481 protein2.2e-5569.8Show/hide
Query:  IFKVPDEISIDNREVFVPAKVSIGPFHHGAPHLESMEDLKWNYLCAFLKHNPSVGLDDLLEFVAKSESRVRKCYEVEFHDLDSQKFARMMVLDCCFVLEL
        IFK P EI+I+ R VFVPAKVSIGPFHHGA HL+S+E+LKW YL  FLKHN S+ L DL++ V KSESR++KCYE +F  LD  +F+ +M+LDCCF+LEL
Subjt:  IFKVPDEISIDNREVFVPAKVSIGPFHHGAPHLESMEDLKWNYLCAFLKHNPSVGLDDLLEFVAKSESRVRKCYEVEFHDLDSQKFARMMVLDCCFVLEL

Query:  LLRFSIKRLKRRNDPVFTTPGLLLDLKSDLILLENQIPYFLLREVYEKV
        LLR+S +R KRRNDPVFTTPGLL D+K DL+LLENQIPYFLL E+YEKV
Subjt:  LLRFSIKRLKRRNDPVFTTPGLLLDLKSDLILLENQIPYFLLREVYEKV

A0A6J1CA62 UPF0481 protein At3g47200-like4.3e-80100Show/hide
Query:  IFKVPDEISIDNREVFVPAKVSIGPFHHGAPHLESMEDLKWNYLCAFLKHNPSVGLDDLLEFVAKSESRVRKCYEVEFHDLDSQKFARMMVLDCCFVLEL
        IFKVPDEISIDNREVFVPAKVSIGPFHHGAPHLESMEDLKWNYLCAFLKHNPSVGLDDLLEFVAKSESRVRKCYEVEFHDLDSQKFARMMVLDCCFVLEL
Subjt:  IFKVPDEISIDNREVFVPAKVSIGPFHHGAPHLESMEDLKWNYLCAFLKHNPSVGLDDLLEFVAKSESRVRKCYEVEFHDLDSQKFARMMVLDCCFVLEL

Query:  LLRFSIKRLKRRNDPVFTTPGLLLDLKSDLILLENQIPYFLLREVYEKV
        LLRFSIKRLKRRNDPVFTTPGLLLDLKSDLILLENQIPYFLLREVYEKV
Subjt:  LLRFSIKRLKRRNDPVFTTPGLLLDLKSDLILLENQIPYFLLREVYEKV

A0A6J1GVU1 UPF0481 protein At3g47200-like5.5e-5975.17Show/hide
Query:  IFKVPDEISIDNREVFVPAKVSIGPFHHGAPHLESMEDLKWNYLCAFLKHNPSVGLDDLLEFVAKSESRVRKCYEVEFHDLDSQKFARMMVLDCCFVLEL
        IF+ P+EISI++R VFVPAKVSIGPFHHGAPHLESME+LKW YL AFLK+NPSV L  L+E V KSESR+RKCYE EF+  DS KF+++M+LDCCF+LEL
Subjt:  IFKVPDEISIDNREVFVPAKVSIGPFHHGAPHLESMEDLKWNYLCAFLKHNPSVGLDDLLEFVAKSESRVRKCYEVEFHDLDSQKFARMMVLDCCFVLEL

Query:  LLRFSIKRLKRRNDPVFTTPGLLLDLKSDLILLENQIPYFLLREVYEKV
        LLRFS KRL+RRND VFTTPGLL DL+ DL+LLENQIPYFLL++VYE V
Subjt:  LLRFSIKRLKRRNDPVFTTPGLLLDLKSDLILLENQIPYFLLREVYEKV

A0A6J1IWZ4 UPF0481 protein At3g47200-like3.9e-5773.15Show/hide
Query:  IFKVPDEISIDNREVFVPAKVSIGPFHHGAPHLESMEDLKWNYLCAFLKHNPSVGLDDLLEFVAKSESRVRKCYEVEFHDLDSQKFARMMVLDCCFVLEL
        IF+  +EISI++R VFVPAKVSIGPFHHGAPHLESME+LKW YL AFLK+NPSV L  L+E V KSESR+RKCYE EF+  DS KF+++M+LDCCF+LEL
Subjt:  IFKVPDEISIDNREVFVPAKVSIGPFHHGAPHLESMEDLKWNYLCAFLKHNPSVGLDDLLEFVAKSESRVRKCYEVEFHDLDSQKFARMMVLDCCFVLEL

Query:  LLRFSIKRLKRRNDPVFTTPGLLLDLKSDLILLENQIPYFLLREVYEKV
        LLR+S KRL+RRND VFTTPGLL DL+ DL+LLENQIPYFLL++VY  V
Subjt:  LLRFSIKRLKRRNDPVFTTPGLLLDLKSDLILLENQIPYFLLREVYEKV

SwissProt top hitse value%identityAlignment
P0C897 Putative UPF0481 protein At3g026453.2e-1127.89Show/hide
Query:  IFKVPDEISIDNREVFVPAKVSIGPFHHGAPHLESMEDLKWNYLCAFLKHNPSVGLDDLLEFVAKSESRVRKCYEVEFHDLDSQKFARMMVLDCCFVLEL
        IF VP  +   + + + P +VSIGP+H   P L  ME  K            S    DL+E +   E ++R CY  ++   + +    +M +D  F++E 
Subjt:  IFKVPDEISIDNREVFVPAKVSIGPFHHGAPHLESMEDLKWNYLCAFLKHNPSVGLDDLLEFVAKSESRVRKCYEVEFHDLDSQKFARMMVLDCCFVLEL

Query:  LLRFSIKRLKRRNDPVFTTPGLLLDLKSDLILLENQIPYFLLREVYE
        L  +S ++++   + V        ++  D++++ENQIP F+LR+  E
Subjt:  LLRFSIKRLKRRNDPVFTTPGLLLDLKSDLILLENQIPYFLLREVYE

Q9SD53 UPF0481 protein At3g472001.1e-1937.75Show/hide
Query:  IFKVPDEISIDNREVFVPAKVSIGPFHHGAPHLESMEDLKWNYLCAFLKHNPSVGLDD--LLEFVAKSESRVRKCYEVEF---HDLDSQKFARMMVLDCC
        IF+VP+     N + + P  VSIGP+H+G  HL+ ++  K   L  FL       +++  L++ V   E ++RK Y  E    HDL       MMVLD C
Subjt:  IFKVPDEISIDNREVFVPAKVSIGPFHHGAPHLESMEDLKWNYLCAFLKHNPSVGLDD--LLEFVAKSESRVRKCYEVEF---HDLDSQKFARMMVLDCC

Query:  FVLELLLRFSIKRLKRRNDPVFTTPGLLLDLKSDLILLENQIPYFLLREVY
        F+L + L  S   ++   DP+F+ P LL  ++SDL+LLENQ+P+F+L+ +Y
Subjt:  FVLELLLRFSIKRLKRRNDPVFTTPGLLLDLKSDLILLENQIPYFLLREVY

Arabidopsis top hitse value%identityAlignment
AT3G47210.1 Plant protein of unknown function (DUF247)3.3e-2441.61Show/hide
Query:  IFKVPDEISIDNREVFVPAKVSIGPFHHGAPHLESMEDLKWNYLCAFLKHNPSVGLDDLLEFVAKSESRVRKCYEVEFHDLDSQKFARMMVLDCCFVLEL
        IF+VP   +  N E + P  VSIGP+HHG  HLE ++  K  +L  FL+   SV  D L   V   E  +RK Y  E  +    +   MM+LD CF+L L
Subjt:  IFKVPDEISIDNREVFVPAKVSIGPFHHGAPHLESMEDLKWNYLCAFLKHNPSVGLDDLLEFVAKSESRVRKCYEVEFHDLDSQKFARMMVLDCCFVLEL

Query:  LLRFSIK-RLKRRNDPVFTTPGLLLDLKSDLILLENQIPYFLLREVYEK
        LL  S K  L    DP+ T P +L  ++SDL+LLENQ+P+F+L+ +++K
Subjt:  LLRFSIK-RLKRRNDPVFTTPGLLLDLKSDLILLENQIPYFLLREVYEK

AT3G47250.1 Plant protein of unknown function (DUF247)3.0e-2537.75Show/hide
Query:  IFKVPDEISIDNREVFVPAKVSIGPFHHGAPHLESMEDLKWNYLCAFLKHNPSVGLDD--LLEFVAKSESRVRKCYEVEFHDLDSQKFARMMVLDCCFVL
        IF++PD ++  N + + P  VSIGP+H+G  HL+ ++  K+ +L  F+      G+D+  L   V   + ++R  Y  E   ++  +   MM+LD CF+L
Subjt:  IFKVPDEISIDNREVFVPAKVSIGPFHHGAPHLESMEDLKWNYLCAFLKHNPSVGLDD--LLEFVAKSESRVRKCYEVEFHDLDSQKFARMMVLDCCFVL

Query:  ELLLRFSIK-RLKRRNDPVFTTPGLLLDLKSDLILLENQIPYFLLREVYEK
         LLL  S K  L    DP+FT P +L  ++SDL+LLENQ+P+F+LR +++K
Subjt:  ELLLRFSIK-RLKRRNDPVFTTPGLLLDLKSDLILLENQIPYFLLREVYEK

AT3G47250.2 Plant protein of unknown function (DUF247)3.0e-2537.75Show/hide
Query:  IFKVPDEISIDNREVFVPAKVSIGPFHHGAPHLESMEDLKWNYLCAFLKHNPSVGLDD--LLEFVAKSESRVRKCYEVEFHDLDSQKFARMMVLDCCFVL
        IF++PD ++  N + + P  VSIGP+H+G  HL+ ++  K+ +L  F+      G+D+  L   V   + ++R  Y  E   ++  +   MM+LD CF+L
Subjt:  IFKVPDEISIDNREVFVPAKVSIGPFHHGAPHLESMEDLKWNYLCAFLKHNPSVGLDD--LLEFVAKSESRVRKCYEVEFHDLDSQKFARMMVLDCCFVL

Query:  ELLLRFSIK-RLKRRNDPVFTTPGLLLDLKSDLILLENQIPYFLLREVYEK
         LLL  S K  L    DP+FT P +L  ++SDL+LLENQ+P+F+LR +++K
Subjt:  ELLLRFSIK-RLKRRNDPVFTTPGLLLDLKSDLILLENQIPYFLLREVYEK

AT3G47250.3 Plant protein of unknown function (DUF247)3.0e-2537.75Show/hide
Query:  IFKVPDEISIDNREVFVPAKVSIGPFHHGAPHLESMEDLKWNYLCAFLKHNPSVGLDD--LLEFVAKSESRVRKCYEVEFHDLDSQKFARMMVLDCCFVL
        IF++PD ++  N + + P  VSIGP+H+G  HL+ ++  K+ +L  F+      G+D+  L   V   + ++R  Y  E   ++  +   MM+LD CF+L
Subjt:  IFKVPDEISIDNREVFVPAKVSIGPFHHGAPHLESMEDLKWNYLCAFLKHNPSVGLDD--LLEFVAKSESRVRKCYEVEFHDLDSQKFARMMVLDCCFVL

Query:  ELLLRFSIK-RLKRRNDPVFTTPGLLLDLKSDLILLENQIPYFLLREVYEK
         LLL  S K  L    DP+FT P +L  ++SDL+LLENQ+P+F+LR +++K
Subjt:  ELLLRFSIK-RLKRRNDPVFTTPGLLLDLKSDLILLENQIPYFLLREVYEK

AT3G50130.1 Plant protein of unknown function (DUF247)9.7e-2440.26Show/hide
Query:  IFKVPDEISIDNREVFVPAKVSIGPFHHGAPHLESMEDLKW---NYLCAFLKHNPSVGLDDLLEFVAKSESRVRKCYEVEFHDLDSQKFARMMVLDCCFV
        I++VP  +  +N++ + P  VS+GPFHHG  HL  M+  KW   N + A  KH+  + +D + E     E R R CYE    DL S KF+ M+VLD CFV
Subjt:  IFKVPDEISIDNREVFVPAKVSIGPFHHGAPHLESMEDLKW---NYLCAFLKHNPSVGLDDLLEFVAKSESRVRKCYEVEFHDLDSQKFARMMVLDCCFV

Query:  LELLLRFSIKRLKR----RNDPVFTTPGLLLDLKSDLILLENQIPYFLLREVYE
        LE L R + +        RNDPVF   G +  ++ D+++LENQ+P F+L  + E
Subjt:  LELLLRFSIKRLKR----RNDPVFTTPGLLLDLKSDLILLENQIPYFLLREVYE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATCTTCAAAGTTCCAGACGAAATCAGTATCGACAACAGAGAAGTCTTCGTCCCGGCCAAAGTTTCGATCGGCCCTTTCCACCACGGCGCTCCACATCTGGAATCCATGGA
AGATCTGAAGTGGAACTACTTGTGCGCTTTCCTCAAGCACAATCCGTCTGTCGGTTTAGATGATCTTCTCGAATTCGTTGCAAAATCAGAGAGCCGAGTGAGAAAATGCT
ATGAGGTAGAGTTCCATGATCTCGACAGCCAAAAGTTCGCGCGGATGATGGTGCTCGATTGCTGCTTCGTTCTCGAGCTGCTTTTGCGATTCTCGATAAAGAGGCTCAAA
CGCCGGAACGATCCTGTTTTCACTACTCCTGGTTTGCTCCTCGATTTGAAGTCCGATTTGATACTGCTTGAAAATCAGATTCCGTATTTCCTTCTGAGAGAGGTTTATGA
AAAAGTG
mRNA sequenceShow/hide mRNA sequence
ATCTTCAAAGTTCCAGACGAAATCAGTATCGACAACAGAGAAGTCTTCGTCCCGGCCAAAGTTTCGATCGGCCCTTTCCACCACGGCGCTCCACATCTGGAATCCATGGA
AGATCTGAAGTGGAACTACTTGTGCGCTTTCCTCAAGCACAATCCGTCTGTCGGTTTAGATGATCTTCTCGAATTCGTTGCAAAATCAGAGAGCCGAGTGAGAAAATGCT
ATGAGGTAGAGTTCCATGATCTCGACAGCCAAAAGTTCGCGCGGATGATGGTGCTCGATTGCTGCTTCGTTCTCGAGCTGCTTTTGCGATTCTCGATAAAGAGGCTCAAA
CGCCGGAACGATCCTGTTTTCACTACTCCTGGTTTGCTCCTCGATTTGAAGTCCGATTTGATACTGCTTGAAAATCAGATTCCGTATTTCCTTCTGAGAGAGGTTTATGA
AAAAGTG
Protein sequenceShow/hide protein sequence
IFKVPDEISIDNREVFVPAKVSIGPFHHGAPHLESMEDLKWNYLCAFLKHNPSVGLDDLLEFVAKSESRVRKCYEVEFHDLDSQKFARMMVLDCCFVLELLLRFSIKRLK
RRNDPVFTTPGLLLDLKSDLILLENQIPYFLLREVYEKV