; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS008293 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS008293
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptioncarotenoid 9,10(9',10')-cleavage dioxygenase 1-like
Genome locationscaffold4:228193..228324
RNA-Seq ExpressionMS008293
SyntenyMS008293
Gene Ontology termsGO:0016121 - carotene catabolic process (biological process)
GO:0009570 - chloroplast stroma (cellular component)
GO:0010436 - carotenoid dioxygenase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR004294 - Carotenoid oxygenase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008466060.1 PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase 1-like isoform X3 [Cucumis melo]1.6e-0875.68Show/hide
Query:  VYIIDAKKFSEEAVAKITLPQRVPYGFHGAFMPMNHD
        VY++DA+KFSEE +AKITLPQRVPYGFHGAFMP+ ++
Subjt:  VYIIDAKKFSEEAVAKITLPQRVPYGFHGAFMPMNHD

XP_016646976.1 PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase 1-like [Prunus mume]1.0e-0782.86Show/hide
Query:  VYIIDAKKFSEEAVAKITLPQRVPYGFHGAFMPMN
        VY+ID KKFS+E VAKITLP RVPYGFHGAFMPM+
Subjt:  VYIIDAKKFSEEAVAKITLPQRVPYGFHGAFMPMN

XP_022139412.1 carotenoid 9,10(9',10')-cleavage dioxygenase 1-like [Momordica charantia]1.0e-1597.73Show/hide
Query:  VYIIDAKKFSEEAVAKITLPQRVPYGFHGAFMPMNHDLMEQIII
        VYIIDAKKFSEEAVAKITLPQRVPYGFHGAFMPMNHDLMEQII+
Subjt:  VYIIDAKKFSEEAVAKITLPQRVPYGFHGAFMPMNHDLMEQIII

XP_022980961.1 carotenoid 9,10(9',10')-cleavage dioxygenase 1-like isoform X1 [Cucurbita maxima]1.0e-0780Show/hide
Query:  VYIIDAKKFSEEAVAKITLPQRVPYGFHGAFMPMN
        VYI+DAK+FS+E VAKITLP RVPYGFHGAFMP++
Subjt:  VYIIDAKKFSEEAVAKITLPQRVPYGFHGAFMPMN

XP_022980963.1 carotenoid 9,10(9',10')-cleavage dioxygenase 1-like isoform X2 [Cucurbita maxima]1.0e-0780Show/hide
Query:  VYIIDAKKFSEEAVAKITLPQRVPYGFHGAFMPMN
        VYI+DAK+FS+E VAKITLP RVPYGFHGAFMP++
Subjt:  VYIIDAKKFSEEAVAKITLPQRVPYGFHGAFMPMN

TrEMBL top hitse value%identityAlignment
A0A1S3CQD3 carotenoid 9,10(9',10')-cleavage dioxygenase 1-like isoform X37.7e-0975.68Show/hide
Query:  VYIIDAKKFSEEAVAKITLPQRVPYGFHGAFMPMNHD
        VY++DA+KFSEE +AKITLPQRVPYGFHGAFMP+ ++
Subjt:  VYIIDAKKFSEEAVAKITLPQRVPYGFHGAFMPMNHD

A0A6J1CDW2 carotenoid 9,10(9',10')-cleavage dioxygenase 1-like5.0e-1697.73Show/hide
Query:  VYIIDAKKFSEEAVAKITLPQRVPYGFHGAFMPMNHDLMEQIII
        VYIIDAKKFSEEAVAKITLPQRVPYGFHGAFMPMNHDLMEQII+
Subjt:  VYIIDAKKFSEEAVAKITLPQRVPYGFHGAFMPMNHDLMEQIII

A0A6J1FNM1 carotenoid 9,10(9',10')-cleavage dioxygenase 1-like5.0e-0880Show/hide
Query:  VYIIDAKKFSEEAVAKITLPQRVPYGFHGAFMPMN
        VYI+DAK+FS+E VAKITLP RVPYGFHGAFMP++
Subjt:  VYIIDAKKFSEEAVAKITLPQRVPYGFHGAFMPMN

A0A6J1IV34 carotenoid 9,10(9',10')-cleavage dioxygenase 1-like isoform X15.0e-0880Show/hide
Query:  VYIIDAKKFSEEAVAKITLPQRVPYGFHGAFMPMN
        VYI+DAK+FS+E VAKITLP RVPYGFHGAFMP++
Subjt:  VYIIDAKKFSEEAVAKITLPQRVPYGFHGAFMPMN

A0A6J1J0T1 carotenoid 9,10(9',10')-cleavage dioxygenase 1-like isoform X25.0e-0880Show/hide
Query:  VYIIDAKKFSEEAVAKITLPQRVPYGFHGAFMPMN
        VYI+DAK+FS+E VAKITLP RVPYGFHGAFMP++
Subjt:  VYIIDAKKFSEEAVAKITLPQRVPYGFHGAFMPMN

SwissProt top hitse value%identityAlignment
C3VEQ4 Carotenoid 9,10(9',10')-cleavage dioxygenase 12.5e-0462.5Show/hide
Query:  VYIIDAKKFSEEAVAKITLPQRVPYGFHGAFM
        VY+IDAK  S E VA + LP RVPYGFH  F+
Subjt:  VYIIDAKKFSEEAVAKITLPQRVPYGFHGAFM

O65572 Carotenoid 9,10(9',10')-cleavage dioxygenase 11.4e-0452.27Show/hide
Query:  VYIIDAKKFSEEAVAKITLPQRVPYGFHGAFMPMNHDLMEQIII
        V +IDAK  S E VA + LP RVPYGFH  F+     L EQ +I
Subjt:  VYIIDAKKFSEEAVAKITLPQRVPYGFHGAFMPMNHDLMEQIII

Q8LP17 Carotenoid 9,10(9',10')-cleavage dioxygenase 11.7e-0558.54Show/hide
Query:  VYIIDAKKFSEEAVAKITLPQRVPYGFHGAFMPMNHDLMEQ
        V++IDAK+ S E VA + LPQRVPYGFH AF      L EQ
Subjt:  VYIIDAKKFSEEAVAKITLPQRVPYGFHGAFMPMNHDLMEQ

Q94IR2 Carotenoid 9,10(9',10')-cleavage dioxygenase 12.5e-0453.66Show/hide
Query:  VYIIDAKKFSEEAVAKITLPQRVPYGFHGAFMPMNHDLMEQ
        V++IDAK  S + VA + LP RVPYGFH AF      L EQ
Subjt:  VYIIDAKKFSEEAVAKITLPQRVPYGFHGAFMPMNHDLMEQ

Arabidopsis top hitse value%identityAlignment
AT3G63520.1 carotenoid cleavage dioxygenase 11.0e-0552.27Show/hide
Query:  VYIIDAKKFSEEAVAKITLPQRVPYGFHGAFMPMNHDLMEQIII
        V +IDAK  S E VA + LP RVPYGFH  F+     L EQ +I
Subjt:  VYIIDAKKFSEEAVAKITLPQRVPYGFHGAFMPMNHDLMEQIII

AT4G19170.1 nine-cis-epoxycarotenoid dioxygenase 43.3e-0456.67Show/hide
Query:  IIDAKKFSEEAVAKITLPQRVPYGFHGAFM
        ++DAK    E VA + LP+RVPYGFHG F+
Subjt:  IIDAKKFSEEAVAKITLPQRVPYGFHGAFM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTATATATAATTGATGCAAAAAAGTTCAGCGAGGAGGCAGTAGCCAAAATCACACTGCCACAAAGAGTTCCCTATGGCTTCCATGGTGCTTTCATGCCCATGAATCATGA
TCTCATGGAGCAAATAATAATC
mRNA sequenceShow/hide mRNA sequence
GTATATATAATTGATGCAAAAAAGTTCAGCGAGGAGGCAGTAGCCAAAATCACACTGCCACAAAGAGTTCCCTATGGCTTCCATGGTGCTTTCATGCCCATGAATCATGA
TCTCATGGAGCAAATAATAATC
Protein sequenceShow/hide protein sequence
VYIIDAKKFSEEAVAKITLPQRVPYGFHGAFMPMNHDLMEQIII