CuGenDBv2

Gene ID	MS008311
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial
Genome location	scaffold4:358798..361701
RNA-Seq Expression	MS008311
Synteny	MS008311
Gene Ontology terms	GO:0006450 - regulation of translational fidelity (biological process) GO:0032543 - mitochondrial translation (biological process) GO:0070681 - glutaminyl-tRNAGln biosynthesis via transamidation (biological process) GO:0005739 - mitochondrion (cellular component) GO:0009507 - chloroplast (cellular component) GO:0030956 - glutamyl-tRNA(Gln) amidotransferase complex (cellular component) GO:0005524 - ATP binding (molecular function) GO:0016740 - transferase activity (molecular function) GO:0050567 - glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity (molecular function)
InterPro domains	IPR003837 - Glu-tRNAGln amidotransferase C subunit IPR036113 - Glu-tRNAGln amidotransferase superfamily, subunit C

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008466091.1 PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucumis melo]

3.0e-59

82.99

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Query:  MGSKALPLLKGALSLPSLQRQIFIYNGFQFHTLPISSNRIRKCSTTPRIRASLQPPDVPRLAETARISLTPTEVEEFAPKIRQVVDWFGQLQTVDLQSIE
        MGSKALPLLKGA S PSL+RQIFI     FH+LP+S+  IRK ST   + ASLQPPDVPRLA+TARISLTPT+VEEFAPKI QVVDWFGQLQTVDLQSIE
Subjt:  MGSKALPLLKGALSLPSLQRQIFIYNGFQFHTLPISSNRIRKCSTTPRIRASLQPPDVPRLAETARISLTPTEVEEFAPKIRQVVDWFGQLQTVDLQSIE

Query:  PSIRADTEGGNQRNDISETFENREAMIGAVPVFDEPYIRVPKVLNKE
        PSIRADTEGGNQRND+ ETFENREAMIGAVPVFDEPYI+VPKVLNKE
Subjt:  PSIRADTEGGNQRNDISETFENREAMIGAVPVFDEPYIRVPKVLNKE

XP_022143239.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Momordica charantia]

2.9e-75

99.32

Show/hide

Query:  MGSKALPLLKGALSLPSLQRQIFIYNGFQFHTLPISSNRIRKCSTTPRIRASLQPPDVPRLAETARISLTPTEVEEFAPKIRQVVDWFGQLQTVDLQSIE
        MGSKALPLLKGALSLPSLQRQIFIYNGFQFHTLPISSN+IRKCSTTPRIRASLQPPDVPRLAETARISLTPTEVEEFAPKIRQVVDWFGQLQTVDLQSIE
Subjt:  MGSKALPLLKGALSLPSLQRQIFIYNGFQFHTLPISSNRIRKCSTTPRIRASLQPPDVPRLAETARISLTPTEVEEFAPKIRQVVDWFGQLQTVDLQSIE

Query:  PSIRADTEGGNQRNDISETFENREAMIGAVPVFDEPYIRVPKVLNKE
        PSIRADTEGGNQRNDISETFENREAMIGAVPVFDEPYIRVPKVLNKE
Subjt:  PSIRADTEGGNQRNDISETFENREAMIGAVPVFDEPYIRVPKVLNKE

XP_022941306.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucurbita moschata]

1.7e-59

85.03

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Query:  MGSKALPLLKGALSLPSLQRQIFIYNGFQFHTLPISSNRIRKCSTTPRIRASLQPPDVPRLAETARISLTPTEVEEFAPKIRQVVDWFGQLQTVDLQSIE
        MGS AL LLKGA SLPSL  QIFI      ++LP+SS RIRKCST P IRASLQPPDVPRLAETARISL P EVEEFAPKIRQVVDWFGQLQ VDLQSIE
Subjt:  MGSKALPLLKGALSLPSLQRQIFIYNGFQFHTLPISSNRIRKCSTTPRIRASLQPPDVPRLAETARISLTPTEVEEFAPKIRQVVDWFGQLQTVDLQSIE

Query:  PSIRADTEGGNQRNDISETFENREAMIGAVPVFDEPYIRVPKVLNKE
        PSIRADTEGGNQR+D+SETFENREAMIGAVPVFDEPYIRVPKVLNKE
Subjt:  PSIRADTEGGNQRNDISETFENREAMIGAVPVFDEPYIRVPKVLNKE

XP_023521629.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucurbita pepo subsp. pepo]

1.5e-58

83.67

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Query:  MGSKALPLLKGALSLPSLQRQIFIYNGFQFHTLPISSNRIRKCSTTPRIRASLQPPDVPRLAETARISLTPTEVEEFAPKIRQVVDWFGQLQTVDLQSIE
        M S AL LLKGA SLPSL  QIFI      ++LP+S+ RIRKCST P IRASLQPPDVPRLAETARISL P+EVEEFAPKIRQVVDWFGQLQ VDLQSIE
Subjt:  MGSKALPLLKGALSLPSLQRQIFIYNGFQFHTLPISSNRIRKCSTTPRIRASLQPPDVPRLAETARISLTPTEVEEFAPKIRQVVDWFGQLQTVDLQSIE

Query:  PSIRADTEGGNQRNDISETFENREAMIGAVPVFDEPYIRVPKVLNKE
        PSIRADTEGGNQR+D+SETFENREAMIGAVPVFDEPYIRVPKVLNKE
Subjt:  PSIRADTEGGNQRNDISETFENREAMIGAVPVFDEPYIRVPKVLNKE

XP_038897282.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Benincasa hispida]

1.2e-60

85.71

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Query:  MGSKALPLLKGALSLPSLQRQIFIYNGFQFHTLPISSNRIRKCSTTPRIRASLQPPDVPRLAETARISLTPTEVEEFAPKIRQVVDWFGQLQTVDLQSIE
        MGSKALPLLKGA S PSL+ +IFI  G   H+LP S  RIRKCST  RI ASLQPPDVPRLAETARISLTPT+VEEFAPKIRQVVDWFGQLQTVDLQSIE
Subjt:  MGSKALPLLKGALSLPSLQRQIFIYNGFQFHTLPISSNRIRKCSTTPRIRASLQPPDVPRLAETARISLTPTEVEEFAPKIRQVVDWFGQLQTVDLQSIE

Query:  PSIRADTEGGNQRNDISETFENREAMIGAVPVFDEPYIRVPKVLNKE
        P+IRADTEGGNQRNDI ETFENREAMIGAVPVFDEPYI+VPKVLNKE
Subjt:  PSIRADTEGGNQRNDISETFENREAMIGAVPVFDEPYIRVPKVLNKE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LJU5 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

2.7e-58

82.31

Show/hide

Query:  MGSKALPLLKGALSLPSLQRQIFIYNGFQFHTLPISSNRIRKCSTTPRIRASLQPPDVPRLAETARISLTPTEVEEFAPKIRQVVDWFGQLQTVDLQSIE
        MGSKALPLLKGA S PSL+RQIFI     FH+LP+S+  IR  ST   I ASLQPPDVPRLA+TARISLTPT+ EEFAPKI QVVDWFGQLQTVDLQSIE
Subjt:  MGSKALPLLKGALSLPSLQRQIFIYNGFQFHTLPISSNRIRKCSTTPRIRASLQPPDVPRLAETARISLTPTEVEEFAPKIRQVVDWFGQLQTVDLQSIE

Query:  PSIRADTEGGNQRNDISETFENREAMIGAVPVFDEPYIRVPKVLNKE
        PSIRADTEGG+QRNDI ETFENREAMIGAVPVFDEPYI+VPKVLNKE
Subjt:  PSIRADTEGGNQRNDISETFENREAMIGAVPVFDEPYIRVPKVLNKE

A0A1S3CQE8 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

1.4e-59

82.99

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Query:  MGSKALPLLKGALSLPSLQRQIFIYNGFQFHTLPISSNRIRKCSTTPRIRASLQPPDVPRLAETARISLTPTEVEEFAPKIRQVVDWFGQLQTVDLQSIE
        MGSKALPLLKGA S PSL+RQIFI     FH+LP+S+  IRK ST   + ASLQPPDVPRLA+TARISLTPT+VEEFAPKI QVVDWFGQLQTVDLQSIE
Subjt:  MGSKALPLLKGALSLPSLQRQIFIYNGFQFHTLPISSNRIRKCSTTPRIRASLQPPDVPRLAETARISLTPTEVEEFAPKIRQVVDWFGQLQTVDLQSIE

Query:  PSIRADTEGGNQRNDISETFENREAMIGAVPVFDEPYIRVPKVLNKE
        PSIRADTEGGNQRND+ ETFENREAMIGAVPVFDEPYI+VPKVLNKE
Subjt:  PSIRADTEGGNQRNDISETFENREAMIGAVPVFDEPYIRVPKVLNKE

A0A5A7T6R5 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

1.4e-59

82.99

Show/hide

Query:  MGSKALPLLKGALSLPSLQRQIFIYNGFQFHTLPISSNRIRKCSTTPRIRASLQPPDVPRLAETARISLTPTEVEEFAPKIRQVVDWFGQLQTVDLQSIE
        MGSKALPLLKGA S PSL+RQIFI     FH+LP+S+  IRK ST   + ASLQPPDVPRLA+TARISLTPT+VEEFAPKI QVVDWFGQLQTVDLQSIE
Subjt:  MGSKALPLLKGALSLPSLQRQIFIYNGFQFHTLPISSNRIRKCSTTPRIRASLQPPDVPRLAETARISLTPTEVEEFAPKIRQVVDWFGQLQTVDLQSIE

Query:  PSIRADTEGGNQRNDISETFENREAMIGAVPVFDEPYIRVPKVLNKE
        PSIRADTEGGNQRND+ ETFENREAMIGAVPVFDEPYI+VPKVLNKE
Subjt:  PSIRADTEGGNQRNDISETFENREAMIGAVPVFDEPYIRVPKVLNKE

A0A6J1CQ90 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

1.4e-75

99.32

Show/hide

Query:  MGSKALPLLKGALSLPSLQRQIFIYNGFQFHTLPISSNRIRKCSTTPRIRASLQPPDVPRLAETARISLTPTEVEEFAPKIRQVVDWFGQLQTVDLQSIE
        MGSKALPLLKGALSLPSLQRQIFIYNGFQFHTLPISSN+IRKCSTTPRIRASLQPPDVPRLAETARISLTPTEVEEFAPKIRQVVDWFGQLQTVDLQSIE
Subjt:  MGSKALPLLKGALSLPSLQRQIFIYNGFQFHTLPISSNRIRKCSTTPRIRASLQPPDVPRLAETARISLTPTEVEEFAPKIRQVVDWFGQLQTVDLQSIE

Query:  PSIRADTEGGNQRNDISETFENREAMIGAVPVFDEPYIRVPKVLNKE
        PSIRADTEGGNQRNDISETFENREAMIGAVPVFDEPYIRVPKVLNKE
Subjt:  PSIRADTEGGNQRNDISETFENREAMIGAVPVFDEPYIRVPKVLNKE

A0A6J1FM33 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

8.4e-60

85.03

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Query:  MGSKALPLLKGALSLPSLQRQIFIYNGFQFHTLPISSNRIRKCSTTPRIRASLQPPDVPRLAETARISLTPTEVEEFAPKIRQVVDWFGQLQTVDLQSIE
        MGS AL LLKGA SLPSL  QIFI      ++LP+SS RIRKCST P IRASLQPPDVPRLAETARISL P EVEEFAPKIRQVVDWFGQLQ VDLQSIE
Subjt:  MGSKALPLLKGALSLPSLQRQIFIYNGFQFHTLPISSNRIRKCSTTPRIRASLQPPDVPRLAETARISLTPTEVEEFAPKIRQVVDWFGQLQTVDLQSIE

Query:  PSIRADTEGGNQRNDISETFENREAMIGAVPVFDEPYIRVPKVLNKE
        PSIRADTEGGNQR+D+SETFENREAMIGAVPVFDEPYIRVPKVLNKE
Subjt:  PSIRADTEGGNQRNDISETFENREAMIGAVPVFDEPYIRVPKVLNKE

SwissProt top hits

e value

%identity

Alignment

A2XK57 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

2.4e-32

69.07

Show/hide

Query:  SLQPPDVPRLAETARISLTPTEVEEFAPKIRQVVDWFGQLQTVDLQSIEPSIRADTEGGNQ-RNDISETFENREAMIGAVPVFDEPYIRVPKVLNKE
        +L+PPD+PRLA  ARISL+P E EEFAPKIRQVVDWFGQLQ VDL+S+EPS+RA T  GN  R D  ETF NR+A+I +VP +D+PYI+VP+VLNKE
Subjt:  SLQPPDVPRLAETARISLTPTEVEEFAPKIRQVVDWFGQLQTVDLQSIEPSIRADTEGGNQ-RNDISETFENREAMIGAVPVFDEPYIRVPKVLNKE

B9INH0 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

2.4e-35

57.43

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Query:  MGSKALPLLKGALSLPSLQRQIFIYNGFQFHTLPISSNRIRKCSTTPRIR-ASLQPPDVPRLAETARISLTPTEVEEFAPKIRQVVDWFGQLQTVDLQSI
        MGS+A+ LLKG    P     +F+ N  +    P     IR+ +T      +SL+PPDV RLAETARISLTP +VEEF PKIRQV+DW   L +VDL S+
Subjt:  MGSKALPLLKGALSLPSLQRQIFIYNGFQFHTLPISSNRIRKCSTTPRIR-ASLQPPDVPRLAETARISLTPTEVEEFAPKIRQVVDWFGQLQTVDLQSI

Query:  EPSIRADTEGGNQRNDISETFENREAMIGAVPVFDEPYIRVPKVLNKE
        EPSIRADTEG N R+D  ETFENREA+I AVP +++PY++VPKVLNKE
Subjt:  EPSIRADTEGGNQRNDISETFENREAMIGAVPVFDEPYIRVPKVLNKE

B9RRX2 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

2.5e-37

59.06

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Query:  MGSKALPLLKGALSLPSLQRQIFIYNGFQFHTLPISSNRI--RKCSTTPRIRASLQPPDVPRLAETARISLTPTEVEEFAPKIRQVVDWFGQLQTVDLQS
        MGS+AL LLK AL    L+ QI   N   +  +  +S  +  R+ S      +SLQPPDV RLAETARISL   EVEEFAPKIRQV+DWFGQLQ VDL S
Subjt:  MGSKALPLLKGALSLPSLQRQIFIYNGFQFHTLPISSNRI--RKCSTTPRIRASLQPPDVPRLAETARISLTPTEVEEFAPKIRQVVDWFGQLQTVDLQS

Query:  IEPSIRADTEGGNQRNDISETFENREAMIGAVPVFDEPYIRVPKVLNKE
        +EP+IRAD+EG N R+D+ ETF  REA+I AVP +++PY++VPKVLNKE
Subjt:  IEPSIRADTEGGNQRNDISETFENREAMIGAVPVFDEPYIRVPKVLNKE

D7STK2 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

6.4e-41

60.54

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Query:  MGSKALPLLKGALSLPSLQRQIFIYNGFQFHTLPISSNRIRKCSTTPRIRASLQPPDVPRLAETARISLTPTEVEEFAPKIRQVVDWFGQLQTVDLQSIE
        MGS+AL LLK   +      +  ++      +  +  N  R  ST    R++L PPD+PRLAETARISLTP EVEEFAPKIRQV+DWFGQLQ VDLQSIE
Subjt:  MGSKALPLLKGALSLPSLQRQIFIYNGFQFHTLPISSNRIRKCSTTPRIRASLQPPDVPRLAETARISLTPTEVEEFAPKIRQVVDWFGQLQTVDLQSIE

Query:  PSIRADTEGGNQRNDISETFENREAMIGAVPVFDEPYIRVPKVLNKE
        PSIRADTEG N R+D  ETFENREA+I A+P ++EPY++VPKVLNK+
Subjt:  PSIRADTEGGNQRNDISETFENREAMIGAVPVFDEPYIRVPKVLNKE

Q7XZZ1 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

2.4e-32

69.07

Show/hide

Query:  SLQPPDVPRLAETARISLTPTEVEEFAPKIRQVVDWFGQLQTVDLQSIEPSIRADTEGGNQ-RNDISETFENREAMIGAVPVFDEPYIRVPKVLNKE
        +L+PPD+PRLA  ARISL+P E EEFAPKIRQVVDWFGQLQ VDL+S+EPS+RA T  GN  R D  ETF NR+A+I +VP +D+PYI+VP+VLNKE
Subjt:  SLQPPDVPRLAETARISLTPTEVEEFAPKIRQVVDWFGQLQTVDLQSIEPSIRADTEGGNQ-RNDISETFENREAMIGAVPVFDEPYIRVPKVLNKE

Arabidopsis top hits

e value

%identity

Alignment

AT4G32915.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of translational fidelity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glu-tRNAGln amidotransferase, C subunit (InterPro:IPR003837); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

9.5e-32

54.95

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Query:  SNRIRKCSTTPRIRASLQPPDVPRLAETARISLTPTEVEEFAPKIRQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDISETFENREAMIGAVPVFDEP
        ++RI +  ++    + LQPPDV RLA+TARISLTP E+EE   KIR+V+DWFGQLQ VD+ S+EP+IRA+ +GGN R D  ETF+NR+++  ++P F++ 
Subjt:  SNRIRKCSTTPRIRASLQPPDVPRLAETARISLTPTEVEEFAPKIRQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDISETFENREAMIGAVPVFDEP

Query:  YIRVPKVLNKE
        Y++VPK+LNKE
Subjt:  YIRVPKVLNKE

Sequences

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CDS sequence

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ATGGGAAGCAAAGCTCTGCCTCTGCTCAAAGGAGCTTTATCACTCCCATCATTGCAGCGCCAAATCTTCATTTATAATGGCTTCCAATTCCATACGCTACCTATTTCTAG
CAACAGAATCCGAAAATGTTCGACTACTCCACGGATTCGGGCCTCTCTTCAACCTCCGGATGTGCCTCGTTTAGCTGAAACAGCTCGAATCTCTCTCACTCCAACTGAGG
TTGAAGAGTTTGCTCCTAAAATTAGACAAGTTGTTGACTGGTTTGGGCAGCTCCAGACGGTTGATCTTCAAAGTATTGAGCCTTCCATAAGAGCAGATACTGAAGGTGGC
AATCAGCGGAATGATATTTCTGAAACATTTGAGAATAGAGAGGCCATGATTGGCGCAGTTCCAGTCTTTGATGAACCGTACATTAGAGTTCCTAAAGTTCTGAATAAGGA
G

mRNA sequence

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Protein sequence

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MGSKALPLLKGALSLPSLQRQIFIYNGFQFHTLPISSNRIRKCSTTPRIRASLQPPDVPRLAETARISLTPTEVEEFAPKIRQVVDWFGQLQTVDLQSIEPSIRADTEGG
NQRNDISETFENREAMIGAVPVFDEPYIRVPKVLNKE

MS008311 (gene) of Bitter gourd (TR) v1 genome