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MS008315 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS008315
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description50S ribosomal protein 6, chloroplastic
Genome locationscaffold4:380488..380790
RNA-Seq ExpressionMS008315
SyntenyMS008315
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR020526 - Ribosomal protein L6, chloroplast


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7024601.1 50S ribosomal protein 6, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]9.8e-3878.5Show/hide
Query:  MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDVRRKPTVYPPLPPLPPDWTLVSSVSGDANVEAA------A
        MSISTFFG RISVPPL + SASK  PC GGNLVIECSSRP+KKATAHHMKTRPRK+QPWD+RRKPTVYPPLPPLPPDWT+VSS+S D  VE A      A
Subjt:  MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDVRRKPTVYPPLPPLPPDWTLVSSVSGDANVEAA------A

Query:  QAPPTSE
        QAPPT+E
Subjt:  QAPPTSE

XP_008466097.1 PREDICTED: 50S ribosomal protein 6, chloroplastic [Cucumis melo]3.4e-3879.25Show/hide
Query:  MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDVRRKPTVYPPLPPLPPDWTLVSSVSGDANVE-----AAAQ
        MSISTF GC+ISVPPL + SASK  PC GGNL IECSSRP KKATAHHMKTRP+K+QPWD+RRKPTVYPPLPPLPPDWTLVSSVSGD NVE     ++AQ
Subjt:  MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDVRRKPTVYPPLPPLPPDWTLVSSVSGDANVE-----AAAQ

Query:  APPTSE
        AP TSE
Subjt:  APPTSE

XP_011652886.1 50S ribosomal protein 6, chloroplastic [Cucumis sativus]2.0e-3880.19Show/hide
Query:  MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDVRRKPTVYPPLPPLPPDWTLVSSVSGDANVEAA-----AQ
        MSISTF GC+ISVPPL + SASK  PC  GNL+IECSSRP KKATAHHMKTRPRK+QPWD+RRKPTVYPPLPPLPPDWTLVSSVSGD NVE A     AQ
Subjt:  MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDVRRKPTVYPPLPPLPPDWTLVSSVSGDANVEAA-----AQ

Query:  APPTSE
        AP TSE
Subjt:  APPTSE

XP_022136057.1 50S ribosomal protein 6, chloroplastic [Momordica charantia]5.0e-5098.02Show/hide
Query:  MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDVRRKPTVYPPLPPLPPDWTLVSSVSGDANVEAAAQAPPTS
        MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWD+RR+PTVYPPLPPLPPDWTLVSSVSGDANVEAAAQAPPTS
Subjt:  MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDVRRKPTVYPPLPPLPPDWTLVSSVSGDANVEAAAQAPPTS

Query:  E
        E
Subjt:  E

XP_023536142.1 50S ribosomal protein 6, chloroplastic-like [Cucurbita pepo subsp. pepo]1.3e-3778.5Show/hide
Query:  MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDVRRKPTVYPPLPPLPPDWTLVSSVSGDANVEAA------A
        MSISTFFG RISVPPL + SASK  PC GGNLVIECSSRP KKATAHHMKTRPRK+QPWD+RRKPTVYPPLPPLPPDWT+VSS+S D  VE A      A
Subjt:  MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDVRRKPTVYPPLPPLPPDWTLVSSVSGDANVEAA------A

Query:  QAPPTSE
        QAPPT+E
Subjt:  QAPPTSE

TrEMBL top hitse value%identityAlignment
A0A0A0LHS7 Uncharacterized protein9.6e-3980.19Show/hide
Query:  MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDVRRKPTVYPPLPPLPPDWTLVSSVSGDANVEAA-----AQ
        MSISTF GC+ISVPPL + SASK  PC  GNL+IECSSRP KKATAHHMKTRPRK+QPWD+RRKPTVYPPLPPLPPDWTLVSSVSGD NVE A     AQ
Subjt:  MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDVRRKPTVYPPLPPLPPDWTLVSSVSGDANVEAA-----AQ

Query:  APPTSE
        AP TSE
Subjt:  APPTSE

A0A1S3CQF4 50S ribosomal protein 6, chloroplastic1.6e-3879.25Show/hide
Query:  MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDVRRKPTVYPPLPPLPPDWTLVSSVSGDANVE-----AAAQ
        MSISTF GC+ISVPPL + SASK  PC GGNL IECSSRP KKATAHHMKTRP+K+QPWD+RRKPTVYPPLPPLPPDWTLVSSVSGD NVE     ++AQ
Subjt:  MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDVRRKPTVYPPLPPLPPDWTLVSSVSGDANVE-----AAAQ

Query:  APPTSE
        AP TSE
Subjt:  APPTSE

A0A5A7TB88 50S ribosomal protein 61.6e-3879.25Show/hide
Query:  MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDVRRKPTVYPPLPPLPPDWTLVSSVSGDANVE-----AAAQ
        MSISTF GC+ISVPPL + SASK  PC GGNL IECSSRP KKATAHHMKTRP+K+QPWD+RRKPTVYPPLPPLPPDWTLVSSVSGD NVE     ++AQ
Subjt:  MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDVRRKPTVYPPLPPLPPDWTLVSSVSGDANVE-----AAAQ

Query:  APPTSE
        AP TSE
Subjt:  APPTSE

A0A6J1C4H7 50S ribosomal protein 6, chloroplastic2.4e-5098.02Show/hide
Query:  MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDVRRKPTVYPPLPPLPPDWTLVSSVSGDANVEAAAQAPPTS
        MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWD+RR+PTVYPPLPPLPPDWTLVSSVSGDANVEAAAQAPPTS
Subjt:  MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDVRRKPTVYPPLPPLPPDWTLVSSVSGDANVEAAAQAPPTS

Query:  E
        E
Subjt:  E

A0A6J1F7W7 50S ribosomal protein 6, chloroplastic-like2.4e-3777.57Show/hide
Query:  MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDVRRKPTVYPPLPPLPPDWTLVSSVSGDANVEAA------A
        MSIST+FG RISVPPL + SASK  PC GGNLVIECSSRP KKATAHHMKTRPRK+QPWD+RRKPTVYPPLPPLPPDWT VSS+S D  VE A      A
Subjt:  MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDVRRKPTVYPPLPPLPPDWTLVSSVSGDANVEAA------A

Query:  QAPPTSE
        QAPPT+E
Subjt:  QAPPTSE

SwissProt top hitse value%identityAlignment
P11892 50S ribosomal protein 6, chloroplastic1.4e-1851.46Show/hide
Query:  SISTFFGCRISVPPLPDL-----SASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDVRRKPTVYPPLPPLPPDWTLVSSVSGDANVEAAAQA
        S+S+ FGC +S+ P   L        +   C  G L+IECSSRP KK+TAHHMKTRPRK++  D  RKPTVY PLPPLPPD+T+V  +  DA+       
Subjt:  SISTFFGCRISVPPLPDL-----SASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDVRRKPTVYPPLPPLPPDWTLVSSVSGDANVEAAAQA

Query:  PPT
        PPT
Subjt:  PPT

P82411 50S ribosomal protein 6, chloroplastic8.7e-2153Show/hide
Query:  MSISTFFGCRISVPPLPDLSAS------KLPP-----CPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDVRRKPTVYPPLPPLPPDWTLVSSVSGDAN
        MS+S  FG R+   P    ++S      KL P     C GG + IECSSRP KK TAHHMKTRP+KT  WD++R P VYPPLPPLP +WT+VSS   +A+
Subjt:  MSISTFFGCRISVPPLPDLSAS------KLPP-----CPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDVRRKPTVYPPLPPLPPDWTLVSSVSGDAN

Q9FKP0 50S ribosomal protein 6, chloroplastic3.3e-2053.06Show/hide
Query:  MSISTFFGCRI----SVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDVRRKPTVYPPLPPLPPDWTLVSSVSGDANVEAAA
        MS+S  FG  I    + P L      KL    G  +VIECSSRP KK+TAHH KTRP+KTQPWD++RKPTVY PLPPLP +W+  +  S D     AA
Subjt:  MSISTFFGCRI----SVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDVRRKPTVYPPLPPLPPDWTLVSSVSGDANVEAAA

Arabidopsis top hitse value%identityAlignment
AT5G17870.1 plastid-specific 50S ribosomal protein 62.3e-2153.06Show/hide
Query:  MSISTFFGCRI----SVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDVRRKPTVYPPLPPLPPDWTLVSSVSGDANVEAAA
        MS+S  FG  I    + P L      KL    G  +VIECSSRP KK+TAHH KTRP+KTQPWD++RKPTVY PLPPLP +W+  +  S D     AA
Subjt:  MSISTFFGCRI----SVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDVRRKPTVYPPLPPLPPDWTLVSSVSGDANVEAAA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGATTTCCACTTTTTTCGGCTGCAGGATTTCGGTTCCGCCATTGCCGGATTTATCTGCAAGCAAGCTACCTCCGTGCCCCGGCGGCAATTTGGTGATTGAATGCTC
GTCAAGGCCGACCAAGAAGGCGACTGCACATCACATGAAAACGAGGCCGCGGAAAACTCAGCCGTGGGACGTCCGGCGCAAGCCAACTGTGTATCCTCCTCTGCCGCCTC
TCCCTCCGGACTGGACCTTGGTTTCTTCAGTCTCCGGCGACGCCAATGTCGAGGCAGCCGCACAAGCACCGCCTACTAGCGAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGATTTCCACTTTTTTCGGCTGCAGGATTTCGGTTCCGCCATTGCCGGATTTATCTGCAAGCAAGCTACCTCCGTGCCCCGGCGGCAATTTGGTGATTGAATGCTC
GTCAAGGCCGACCAAGAAGGCGACTGCACATCACATGAAAACGAGGCCGCGGAAAACTCAGCCGTGGGACGTCCGGCGCAAGCCAACTGTGTATCCTCCTCTGCCGCCTC
TCCCTCCGGACTGGACCTTGGTTTCTTCAGTCTCCGGCGACGCCAATGTCGAGGCAGCCGCACAAGCACCGCCTACTAGCGAG
Protein sequenceShow/hide protein sequence
MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDVRRKPTVYPPLPPLPPDWTLVSSVSGDANVEAAAQAPPTSE