CuGenDBv2

Gene ID	MS008339
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Transcription initiation factor IIA subunit 2
Genome location	scaffold4:645906..647155
RNA-Seq Expression	MS008339
Synteny	MS008339
Gene Ontology terms	GO:0006413 - translational initiation (biological process) GO:0051123 - RNA polymerase II preinitiation complex assembly (biological process) GO:0005672 - transcription factor TFIIA complex (cellular component) GO:0003743 - translation initiation factor activity (molecular function) GO:0016251 - RNA polymerase II general transcription initiation factor activity (molecular function) GO:0017025 - TBP-class protein binding (molecular function)
InterPro domains	IPR003194 - Transcription initiation factor IIA, gamma subunit IPR009083 - Transcription factor IIA, alpha-helical domain IPR009088 - Transcription factor IIA, beta-barrel IPR015871 - Transcription initiation factor IIA, gamma subunit, C-terminal IPR015872 - Transcription initiation factor IIA, gamma subunit, N-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6608125.1 Transcription initiation factor IIA subunit 2, partial [Cucurbita argyrosperma subsp. sororia]

4.0e-50

97.17

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV+IKGHLHTYRFCDNVWTFILQDATFKNEDSQE VGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ

XP_004287436.1 PREDICTED: transcription initiation factor IIA subunit 2 [Fragaria vesca subsp. vesca]

2.4e-50

97.17

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALE+QVKSKVSIKGHLHTYRFCDNVWTFILQDA FKNEDSQENVGR+KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

XP_022133819.1 transcription initiation factor IIA subunit 2 [Momordica charantia]

1.6e-51

100

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

XP_022936677.1 transcription initiation factor IIA subunit 2 [Cucurbita moschata]

1.8e-50

98.11

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQE VGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ

XP_022941425.1 transcription initiation factor IIA subunit 2-like [Cucurbita moschata]

4.0e-50

97.17

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV+IKGHLHTYRFCDNVWTFILQDATFKNEDSQE VGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ

TrEMBL top hits

e value

%identity

Alignment

A0A1S2XSF2 Transcription initiation factor IIA subunit 2

1.1e-50

97.17

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALE+QVKSKVSIKGHLHTYRFCDNVWTFILQDA FKNEDSQENVGR+KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

A0A6J1BWA2 Transcription initiation factor IIA subunit 2

7.9e-52

100

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

A0A6J1F935 Transcription initiation factor IIA subunit 2

8.7e-51

98.11

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQE VGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ

A0A6J1ILT9 Transcription initiation factor IIA subunit 2

8.7e-51

98.11

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQE VGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ

A0A6J1J100 Transcription initiation factor IIA subunit 2

1.9e-50

97.17

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV+IKGHLHTYRFCDNVWTFILQDATFKNEDSQE VGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ

SwissProt top hits

e value

%identity

Alignment

A2XZI2 Transcription initiation factor IIA subunit 2

1.3e-48

88.68

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMV +GTLSPELAIQVLVQFDKSMTEALE+QVKSKVSIKGHLHTYRFCDNVWTFIL +A+FKNE++ E VG++KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

O74948 Transcription initiation factor IIA subunit 2

7.2e-26

51.52

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Query:  FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACDSK
        +ELYRRS+IG+ LT+ LD+++  G +SP+LA++VL  FDKSMTEAL  +V+S+++ KGHL TYRFCD VWTFI+++ +F+ ++      +I+IVAC ++
Subjt:  FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACDSK

Q0DLD3 Transcription initiation factor IIA subunit 2

1.3e-48

88.68

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMV +GTLSPELAIQVLVQFDKSMTEALE+QVKSKVSIKGHLHTYRFCDNVWTFIL +A+FKNE++ E VG++KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

Q39236 Transcription initiation factor IIA subunit 2

4.2e-50

91.51

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KVSIKGHLHTYRFCDNVWTFILQDA FK++D QENV R+KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ

Q90YG6 Transcription initiation factor IIA subunit 2

3.6e-25

50.51

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Query:  FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACDSK
        ++LYR +T+G  L E+LDE++Q   ++P+LA+QVL+QFDK++  AL ++V+++V+ KG L+TYRFCDNVWTF+L D  F+       V ++KIVACD K
Subjt:  FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACDSK

Arabidopsis top hits

e value

%identity

Alignment

AT4G24440.1 transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)

3.0e-51

91.51

Show/hide

Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KVSIKGHLHTYRFCDNVWTFILQDA FK++D QENV R+KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ

AT4G24440.2 transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)

3.0e-51

91.51

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KVSIKGHLHTYRFCDNVWTFILQDA FK++D QENV R+KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ

Sequences

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CDS sequence

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ATGGCGACGTTTGAACTGTACCGCAGATCGACGATCGGAATGTGTTTGACTGAAACTTTGGACGAAATGGTTCAGAATGGTACTCTTAGTCCTGAGCTTGCTATTCAGGT
TCTTGTCCAGTTCGATAAGTCTATGACTGAGGCTCTGGAATCACAGGTGAAAAGCAAGGTGTCTATCAAGGGACATTTGCACACCTATCGATTCTGCGACAACGTTTGGA
CCTTCATTTTGCAGGATGCAACATTTAAGAACGAGGATTCCCAAGAGAATGTTGGGAGAATTAAAATAGTAGCATGTGACTCGAAGTTACTCTCACAA

mRNA sequence

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Protein sequence

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MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACDSKLLSQ

MS008339 (gene) of Bitter gourd (TR) v1 genome