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MS008373 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS008373
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptioncircumsporozoite protein-like
Genome locationscaffold4:917115..917567
RNA-Seq ExpressionMS008373
SyntenyMS008373
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN60236.1 hypothetical protein Csa_001434 [Cucumis sativus]1.9e-2967.35Show/hide
Query:  MIDPVPATLFKAAPLPGVEAGDGACDGGFAIEVAGVGVDAGESEGAVGGAGGEEAGAEAGGEVPVEGAGETPAGAGDEDGVDAGGVATAVGGAAFGDDAG
        MIDP  A LF  APLPGV+ GDGA  GGF +E  G GV  GESEGAVGGAGGEEAGA AGGEV V+GAG TP GA  ED    GGVAT  GGA  G++AG
Subjt:  MIDPVPATLFKAAPLPGVEAGDGACDGGFAIEVAGVGVDAGESEGAVGGAGGEEAGAEAGGEVPVEGAGETPAGAGDEDGVDAGGVATAVGGAAFGDDAG

Query:  GGLVGEEAGAAPGAWPKEPATKANSTKNTKA-EEAMAV-KNAQRREE
          LVGEEAGAAPGAWP+E A KA  T  TKA EEAM V KN +RRE+
Subjt:  GGLVGEEAGAAPGAWPKEPATKANSTKNTKA-EEAMAV-KNAQRREE
XP_022136125.1 circumsporozoite protein-like [Momordica charantia]8.8e-6799.34Show/hide
Query:  MIDPVPATLFKAAPLPGVEAGDGACDGGFAIEVAGVGVDAGESEGAVGGAGGEEAGAEAGGEVPVEGAGETPAGAGDEDGVDAGGVATAVGGAAFGDDAG
        MIDPVPATLFKAAPLPGVEAGDGACDGGFAIEV+GVGVDAGESEGAVGGAGGEEAGAEAGGEVPVEGAGETPAGAGDEDGVDAGGVATAVGGAAFGDDAG
Subjt:  MIDPVPATLFKAAPLPGVEAGDGACDGGFAIEVAGVGVDAGESEGAVGGAGGEEAGAEAGGEVPVEGAGETPAGAGDEDGVDAGGVATAVGGAAFGDDAG

Query:  GGLVGEEAGAAPGAWPKEPATKANSTKNTKAEEAMAVKNAQRREENGRRRS
        GGLVGEEAGAAPGAWPKEPATKANSTKNTKAEEAMAVKNAQRREENGRRRS
Subjt:  GGLVGEEAGAAPGAWPKEPATKANSTKNTKAEEAMAVKNAQRREENGRRRS
TrEMBL top hitse value%identityAlignment
A0A0A0LJM1 Uncharacterized protein9.3e-3067.35Show/hide
Query:  MIDPVPATLFKAAPLPGVEAGDGACDGGFAIEVAGVGVDAGESEGAVGGAGGEEAGAEAGGEVPVEGAGETPAGAGDEDGVDAGGVATAVGGAAFGDDAG
        MIDP  A LF  APLPGV+ GDGA  GGF +E  G GV  GESEGAVGGAGGEEAGA AGGEV V+GAG TP GA  ED    GGVAT  GGA  G++AG
Subjt:  MIDPVPATLFKAAPLPGVEAGDGACDGGFAIEVAGVGVDAGESEGAVGGAGGEEAGAEAGGEVPVEGAGETPAGAGDEDGVDAGGVATAVGGAAFGDDAG

Query:  GGLVGEEAGAAPGAWPKEPATKANSTKNTKA-EEAMAV-KNAQRREE
          LVGEEAGAAPGAWP+E A KA  T  TKA EEAM V KN +RRE+
Subjt:  GGLVGEEAGAAPGAWPKEPATKANSTKNTKA-EEAMAV-KNAQRREE
A0A6J1C301 circumsporozoite protein-like4.3e-6799.34Show/hide
Query:  MIDPVPATLFKAAPLPGVEAGDGACDGGFAIEVAGVGVDAGESEGAVGGAGGEEAGAEAGGEVPVEGAGETPAGAGDEDGVDAGGVATAVGGAAFGDDAG
        MIDPVPATLFKAAPLPGVEAGDGACDGGFAIEV+GVGVDAGESEGAVGGAGGEEAGAEAGGEVPVEGAGETPAGAGDEDGVDAGGVATAVGGAAFGDDAG
Subjt:  MIDPVPATLFKAAPLPGVEAGDGACDGGFAIEVAGVGVDAGESEGAVGGAGGEEAGAEAGGEVPVEGAGETPAGAGDEDGVDAGGVATAVGGAAFGDDAG

Query:  GGLVGEEAGAAPGAWPKEPATKANSTKNTKAEEAMAVKNAQRREENGRRRS
        GGLVGEEAGAAPGAWPKEPATKANSTKNTKAEEAMAVKNAQRREENGRRRS
Subjt:  GGLVGEEAGAAPGAWPKEPATKANSTKNTKAEEAMAVKNAQRREENGRRRS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATAGATCCGGTGCCGGCGACTCTGTTCAAGGCAGCGCCATTGCCGGGAGTAGAGGCTGGCGACGGAGCCTGTGACGGAGGGTTTGCGATCGAAGTTGCAGGAGTCGG
AGTGGACGCTGGTGAATCTGAAGGAGCTGTAGGCGGAGCAGGTGGAGAAGAAGCCGGCGCCGAAGCTGGTGGTGAAGTTCCAGTGGAAGGAGCGGGAGAGACGCCCGCCG
GAGCAGGAGATGAAGACGGTGTCGACGCTGGAGGAGTCGCTACTGCAGTCGGAGGAGCCGCTTTCGGCGACGACGCCGGAGGCGGTTTGGTTGGAGAGGAAGCCGGAGCG
GCGCCCGGAGCCTGGCCCAAGGAGCCGGCGACCAAGGCGAATAGCACGAAGAACACGAAAGCGGAGGAAGCCATGGCGGTGAAAAATGCGCAGCGAAGAGAGGAGAATGG
AAGAAGAAGATCG
mRNA sequenceShow/hide mRNA sequence
ATGATAGATCCGGTGCCGGCGACTCTGTTCAAGGCAGCGCCATTGCCGGGAGTAGAGGCTGGCGACGGAGCCTGTGACGGAGGGTTTGCGATCGAAGTTGCAGGAGTCGG
AGTGGACGCTGGTGAATCTGAAGGAGCTGTAGGCGGAGCAGGTGGAGAAGAAGCCGGCGCCGAAGCTGGTGGTGAAGTTCCAGTGGAAGGAGCGGGAGAGACGCCCGCCG
GAGCAGGAGATGAAGACGGTGTCGACGCTGGAGGAGTCGCTACTGCAGTCGGAGGAGCCGCTTTCGGCGACGACGCCGGAGGCGGTTTGGTTGGAGAGGAAGCCGGAGCG
GCGCCCGGAGCCTGGCCCAAGGAGCCGGCGACCAAGGCGAATAGCACGAAGAACACGAAAGCGGAGGAAGCCATGGCGGTGAAAAATGCGCAGCGAAGAGAGGAGAATGG
AAGAAGAAGATCG
Protein sequenceShow/hide protein sequence
MIDPVPATLFKAAPLPGVEAGDGACDGGFAIEVAGVGVDAGESEGAVGGAGGEEAGAEAGGEVPVEGAGETPAGAGDEDGVDAGGVATAVGGAAFGDDAGGGLVGEEAGA
APGAWPKEPATKANSTKNTKAEEAMAVKNAQRREENGRRRS