; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS008378 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS008378
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionSKI/DACH domain-containing protein 1
Genome locationscaffold4:976681..977109
RNA-Seq ExpressionMS008378
SyntenyMS008378
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7024556.1 hypothetical protein SDJN02_13373, partial [Cucurbita argyrosperma subsp. argyrosperma]7.6e-3666.22Show/hide
Query:  MANPHKSKLNFKPDDDRRRCKKHPKHRQSPGVCSLCLIEKLSHLSASVSSRKTSDSLSSSSSSSCYSSASSCSSCSSPN-LYSYSMDRRPI----SSSIF
        MAN H+SK ++   DDRRRCK+HPKH QSPGVCSLCL EKLS + ++ SSRK SDSLSSS SSS YSSASSCSSCSSPN  Y Y+ DRR      +SSIF
Subjt:  MANPHKSKLNFKPDDDRRRCKKHPKHRQSPGVCSLCLIEKLSHLSASVSSRKTSDSLSSSSSSSCYSSASSCSSCSSPN-LYSYSMDRRPI----SSSIF

Query:  KKSKSLAFAPRFRRGREEDNGKRSNLGFWSKFFLNRPRTKRTIMEDVV
        KKS+S+AFAPR RRG E D+GK +NLGFWSK  L RPR K    E+V+
Subjt:  KKSKSLAFAPRFRRGREEDNGKRSNLGFWSKFFLNRPRTKRTIMEDVV

XP_022936383.1 uncharacterized protein LOC111443018 [Cucurbita moschata]1.7e-3565.54Show/hide
Query:  MANPHKSKLNFKPDDDRRRCKKHPKHRQSPGVCSLCLIEKLSHLSASVSSRKTSDSLSSSSSSSCYSSASSCSSCSSPN-LYSYSMDRRPI----SSSIF
        MAN H+SK ++   DDRRRCK+HPKH QSPGVCSLCL EKLS + ++ SSRK SDSLSSS S+S YSSASSCSSCSSPN  Y Y+ DRR      +SSIF
Subjt:  MANPHKSKLNFKPDDDRRRCKKHPKHRQSPGVCSLCLIEKLSHLSASVSSRKTSDSLSSSSSSSCYSSASSCSSCSSPN-LYSYSMDRRPI----SSSIF

Query:  KKSKSLAFAPRFRRGREEDNGKRSNLGFWSKFFLNRPRTKRTIMEDVV
        KKS+S+AFAPR RRG E D+GK +NLGFWSK  L RPR K    E+V+
Subjt:  KKSKSLAFAPRFRRGREEDNGKRSNLGFWSKFFLNRPRTKRTIMEDVV

XP_022975755.1 uncharacterized protein LOC111476165 [Cucurbita maxima]7.6e-3666.22Show/hide
Query:  MANPHKSKLNFKPDDDRRRCKKHPKHRQSPGVCSLCLIEKLSHLSASVSSRKTSDSLSSSSSSSCYSSASSCSSCSSPN-LYSYSMDRRPI----SSSIF
        MAN HKSK ++   DDRRRCK+HPKH QSPGVCSLCL EKLS + ++ SSRK SDSLSSS SSS YSSASSCSSCSSPN  Y Y+ DRR      +SSIF
Subjt:  MANPHKSKLNFKPDDDRRRCKKHPKHRQSPGVCSLCLIEKLSHLSASVSSRKTSDSLSSSSSSSCYSSASSCSSCSSPN-LYSYSMDRRPI----SSSIF

Query:  KKSKSLAFAPRFRRGREEDNGKRSNLGFWSKFFLNRPRTKRTIMEDVV
        KKS+S+AFAPR +R  E D+GK SNLGFWS+ FL RPR K    E+V+
Subjt:  KKSKSLAFAPRFRRGREEDNGKRSNLGFWSKFFLNRPRTKRTIMEDVV

XP_022981929.1 uncharacterized protein LOC111480927 [Cucurbita maxima]6.7e-3266Show/hide
Query:  MANPHKSKLNFKPDDDRRR----CKKHPKHRQSPGVCSLCLIEKLSH-LSASVSSRKTSDSLSSSS--SSSCYSSASSCSSCSSPNLYSYSMDRRPISSS
        MAN HKSK ++  DD RRR    CK+HPKHRQSPGVCSLCL EKLS  LSA+ SSRK SDSLSSSS  SSS YSS SSCSSCSSPN   Y    +  +SS
Subjt:  MANPHKSKLNFKPDDDRRR----CKKHPKHRQSPGVCSLCLIEKLSH-LSASVSSRKTSDSLSSSS--SSSCYSSASSCSSCSSPNLYSYSMDRRPISSS

Query:  IFKKSKSLAFAPRFRRGREEDNGKRSNLGFWSKFFLNRPRTKRTIMEDVV
        I+KKS+SLAFA RFRRG + D+GK+S+LGFWS+ FLNRPR KR  +E+ +
Subjt:  IFKKSKSLAFAPRFRRGREEDNGKRSNLGFWSKFFLNRPRTKRTIMEDVV

XP_023524412.1 uncharacterized protein LOC111788316 [Cucurbita pepo subsp. pepo]4.3e-3164.24Show/hide
Query:  MANPHKSKLNFKPDDDRRR-----CKKHPKHRQSPGVCSLCLIEKLSH-LSASVSSRKTSDSLSSSS--SSSCYSSASSCSSCSSPNLYSYSMDRRPISS
        MAN HKSK ++  DD RR      CK+HPKHRQSPGVCSLCL EKLS  LSA+ SSRK SDSLSSSS  SSS YSS SSCSSCSSPN   Y    +  +S
Subjt:  MANPHKSKLNFKPDDDRRR-----CKKHPKHRQSPGVCSLCLIEKLSH-LSASVSSRKTSDSLSSSS--SSSCYSSASSCSSCSSPNLYSYSMDRRPISS

Query:  SIFKKSKSLAFAPRFRRGREEDNGKRSNLGFWSKFFLNRPRTKRTIMEDVV
        SI+KKS+S+AFA RFRRG + D+GK+S+LGFWS+ FLNRPR KR  +E+ +
Subjt:  SIFKKSKSLAFAPRFRRGREEDNGKRSNLGFWSKFFLNRPRTKRTIMEDVV

TrEMBL top hitse value%identityAlignment
A0A0A0LJL6 Uncharacterized protein5.0e-1750.6Show/hide
Query:  MANPHKSKLNFKPDDDRRR--------CKKHPKHRQSPGVCSLCLIEKLSHLSASVSS--RKTSDSLSSSSSSSCYSSASSC--SSCSSPNLYSY--SMD
        MAN H S    K D D RR        C++HP H QSPGVCSLCL EKLS + A  +S   K S+SLSSSSSSS YSS SS   SS SSP LY Y  S +
Subjt:  MANPHKSKLNFKPDDDRRR--------CKKHPKHRQSPGVCSLCLIEKLSHLSASVSS--RKTSDSLSSSSSSSCYSSASSC--SSCSSPNLYSY--SMD

Query:  RRP--------ISSSIFKKSKSLAFAPRFRRGREEDNGKRSN---LGFWSKFFLNRPRTKRTIMEDVV
          P         +SSIFKKSK++A   R     E D GK+SN   LGFWS+ FLNR R KR   ++V+
Subjt:  RRP--------ISSSIFKKSKSLAFAPRFRRGREEDNGKRSN---LGFWSKFFLNRPRTKRTIMEDVV

A0A6J1FD38 uncharacterized protein LOC1114430188.2e-3665.54Show/hide
Query:  MANPHKSKLNFKPDDDRRRCKKHPKHRQSPGVCSLCLIEKLSHLSASVSSRKTSDSLSSSSSSSCYSSASSCSSCSSPN-LYSYSMDRRPI----SSSIF
        MAN H+SK ++   DDRRRCK+HPKH QSPGVCSLCL EKLS + ++ SSRK SDSLSSS S+S YSSASSCSSCSSPN  Y Y+ DRR      +SSIF
Subjt:  MANPHKSKLNFKPDDDRRRCKKHPKHRQSPGVCSLCLIEKLSHLSASVSSRKTSDSLSSSSSSSCYSSASSCSSCSSPN-LYSYSMDRRPI----SSSIF

Query:  KKSKSLAFAPRFRRGREEDNGKRSNLGFWSKFFLNRPRTKRTIMEDVV
        KKS+S+AFAPR RRG E D+GK +NLGFWSK  L RPR K    E+V+
Subjt:  KKSKSLAFAPRFRRGREEDNGKRSNLGFWSKFFLNRPRTKRTIMEDVV

A0A6J1FKF2 uncharacterized protein LOC1114460766.1e-3163.58Show/hide
Query:  MANPHKSKLNFKPDDDRRR-----CKKHPKHRQSPGVCSLCLIEKLSH-LSASVSSRKTSDSLSSSSSS--SCYSSASSCSSCSSPNLYSYSMDRRPISS
        MAN HKSK ++  DD RR      CK+HPKHRQSPGVCSLCL EKLS  LSA+ SSRK SDSLSSSSS   S YSS SSCSSCSSPN   Y    +  +S
Subjt:  MANPHKSKLNFKPDDDRRR-----CKKHPKHRQSPGVCSLCLIEKLSH-LSASVSSRKTSDSLSSSSSS--SCYSSASSCSSCSSPNLYSYSMDRRPISS

Query:  SIFKKSKSLAFAPRFRRGREEDNGKRSNLGFWSKFFLNRPRTKRTIMEDVV
        SI+KKS+S+AFA RFRRG + D+GK+S+LGFWS+ FLNRPR KR  +E+ +
Subjt:  SIFKKSKSLAFAPRFRRGREEDNGKRSNLGFWSKFFLNRPRTKRTIMEDVV

A0A6J1IHL9 uncharacterized protein LOC1114761653.7e-3666.22Show/hide
Query:  MANPHKSKLNFKPDDDRRRCKKHPKHRQSPGVCSLCLIEKLSHLSASVSSRKTSDSLSSSSSSSCYSSASSCSSCSSPN-LYSYSMDRRPI----SSSIF
        MAN HKSK ++   DDRRRCK+HPKH QSPGVCSLCL EKLS + ++ SSRK SDSLSSS SSS YSSASSCSSCSSPN  Y Y+ DRR      +SSIF
Subjt:  MANPHKSKLNFKPDDDRRRCKKHPKHRQSPGVCSLCLIEKLSHLSASVSSRKTSDSLSSSSSSSCYSSASSCSSCSSPN-LYSYSMDRRPI----SSSIF

Query:  KKSKSLAFAPRFRRGREEDNGKRSNLGFWSKFFLNRPRTKRTIMEDVV
        KKS+S+AFAPR +R  E D+GK SNLGFWS+ FL RPR K    E+V+
Subjt:  KKSKSLAFAPRFRRGREEDNGKRSNLGFWSKFFLNRPRTKRTIMEDVV

A0A6J1J366 uncharacterized protein LOC1114809273.2e-3266Show/hide
Query:  MANPHKSKLNFKPDDDRRR----CKKHPKHRQSPGVCSLCLIEKLSH-LSASVSSRKTSDSLSSSS--SSSCYSSASSCSSCSSPNLYSYSMDRRPISSS
        MAN HKSK ++  DD RRR    CK+HPKHRQSPGVCSLCL EKLS  LSA+ SSRK SDSLSSSS  SSS YSS SSCSSCSSPN   Y    +  +SS
Subjt:  MANPHKSKLNFKPDDDRRR----CKKHPKHRQSPGVCSLCLIEKLSH-LSASVSSRKTSDSLSSSS--SSSCYSSASSCSSCSSPNLYSYSMDRRPISSS

Query:  IFKKSKSLAFAPRFRRGREEDNGKRSNLGFWSKFFLNRPRTKRTIMEDVV
        I+KKS+SLAFA RFRRG + D+GK+S+LGFWS+ FLNRPR KR  +E+ +
Subjt:  IFKKSKSLAFAPRFRRGREEDNGKRSNLGFWSKFFLNRPRTKRTIMEDVV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G22470.1 unknown protein1.8e-0641.96Show/hide
Query:  CKKHPKHRQSPGVCSLCLIEKLSHLSASVSSRKTSDSLSSSSSSSCYSSASSCSSCSSPNLYSYSMDRRPISSSIFKKSKSLAFAPRFRRGREEDNGKRS
        CKKHPKHRQSPG+CSLCL E LS LS+     +  D  SS SSSS   + SSCSS SS +   +S      + S +  S S   +P   R  E    K+ 
Subjt:  CKKHPKHRQSPGVCSLCLIEKLSHLSASVSSRKTSDSLSSSSSSSCYSSASSCSSCSSPNLYSYSMDRRPISSSIFKKSKSLAFAPRFRRGREEDNGKRS

Query:  NLGFWSKFFLNR
              + FL+R
Subjt:  NLGFWSKFFLNR

AT1G35210.1 unknown protein3.0e-0642.74Show/hide
Query:  CKKHPKHRQSPGVCSLCLIEKLSHLSASVSSRKTSD----SLSSSSSSSCYS-SASSCSSCSSP-------NLYSYSMDRRPISSSIFKKSKSLAFAPRF
        CKKHPKHRQSPGVCSLCL E+LS    + SSR+       S SSS++SS  S  +SS SSC SP        L S    R     S   KS+S+A+    
Subjt:  CKKHPKHRQSPGVCSLCLIEKLSHLSASVSSRKTSD----SLSSSSSSSCYS-SASSCSSCSSP-------NLYSYSMDRRPISSSIFKKSKSLAFAPRF

Query:  RRGREEDNGKRSNLGFW
         + R++    ++N GF+
Subjt:  RRGREEDNGKRSNLGFW

AT1G72240.1 unknown protein5.5e-0856.25Show/hide
Query:  DDRRRCKKHPKHRQSPGVCSLCLIEKLSHLS----------ASVSSRKTSDSLSSSSS-SSCYSSASSCSSCSSPNLYSY
        D+   CKKH KHRQSPG+CSLCL E+LS LS             ++   S S SSSSS SSCYSS SS SSCSSP  Y Y
Subjt:  DDRRRCKKHPKHRQSPGVCSLCLIEKLSHLS----------ASVSSRKTSDSLSSSSS-SSCYSSASSCSSCSSPNLYSY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAACCCGCACAAATCGAAGCTCAATTTCAAGCCCGACGACGACCGCCGCCGCTGCAAAAAGCATCCCAAACACCGCCAATCCCCCGGCGTCTGCTCCCTCTGTTT
GATCGAGAAGCTCTCTCATCTCTCCGCCTCCGTATCGTCGCGTAAAACCTCCGATTCTCTCTCCTCTTCTTCCTCTTCCTCTTGTTACTCCTCTGCTTCGTCCTGTTCTT
CGTGTTCTTCGCCGAATCTTTACAGTTACAGTATGGATCGGCGTCCGATTTCTTCTTCGATCTTTAAGAAGAGTAAATCGCTGGCGTTCGCGCCGAGATTTCGACGTGGA
AGAGAGGAGGATAACGGAAAGAGGAGTAACTTAGGGTTTTGGTCGAAGTTTTTTCTGAATCGTCCGAGGACGAAGCGGACGATTATGGAAGATGTTGTG
mRNA sequenceShow/hide mRNA sequence
ATGGCGAACCCGCACAAATCGAAGCTCAATTTCAAGCCCGACGACGACCGCCGCCGCTGCAAAAAGCATCCCAAACACCGCCAATCCCCCGGCGTCTGCTCCCTCTGTTT
GATCGAGAAGCTCTCTCATCTCTCCGCCTCCGTATCGTCGCGTAAAACCTCCGATTCTCTCTCCTCTTCTTCCTCTTCCTCTTGTTACTCCTCTGCTTCGTCCTGTTCTT
CGTGTTCTTCGCCGAATCTTTACAGTTACAGTATGGATCGGCGTCCGATTTCTTCTTCGATCTTTAAGAAGAGTAAATCGCTGGCGTTCGCGCCGAGATTTCGACGTGGA
AGAGAGGAGGATAACGGAAAGAGGAGTAACTTAGGGTTTTGGTCGAAGTTTTTTCTGAATCGTCCGAGGACGAAGCGGACGATTATGGAAGATGTTGTG
Protein sequenceShow/hide protein sequence
MANPHKSKLNFKPDDDRRRCKKHPKHRQSPGVCSLCLIEKLSHLSASVSSRKTSDSLSSSSSSSCYSSASSCSSCSSPNLYSYSMDRRPISSSIFKKSKSLAFAPRFRRG
REEDNGKRSNLGFWSKFFLNRPRTKRTIMEDVV