; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS008444 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS008444
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionreplication protein A 32 kDa subunit A
Genome locationscaffold4:1463814..1468369
RNA-Seq ExpressionMS008444
SyntenyMS008444
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0006260 - DNA replication (biological process)
GO:0006289 - nucleotide-excision repair (biological process)
GO:0000781 - chromosome, telomeric region (cellular component)
GO:0005662 - DNA replication factor A complex (cellular component)
GO:0035861 - site of double-strand break (cellular component)
GO:0003697 - single-stranded DNA binding (molecular function)
GO:0008168 - methyltransferase activity (molecular function)
InterPro domainsIPR004365 - OB-fold nucleic acid binding domain, AA-tRNA synthetase-type
IPR012340 - Nucleic acid-binding, OB-fold
IPR014646 - Replication factor A protein 2
IPR014892 - Replication protein A, C-terminal
IPR036388 - Winged helix-like DNA-binding domain superfamily
IPR036390 - Winged helix DNA-binding domain superfamily
IPR040260 - Replication factor A protein-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591621.1 Replication protein A 32 kDa subunit A, partial [Cucurbita argyrosperma subsp. sororia]2.3e-12687.82Show/hide
Query:  MFSSSQFDSGSGFTSSQVPDSTSAKSRESPGLVPVTVKQISEAFHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFVVDDGTGRIGCKRWVNDTF
        MFSSSQFDSGSGFTSSQ  DS+SAK+RE+PGLVP TVKQISEA HSGEEKANF INGVDITNVTIVGKVSEKAERNTDITF+VDDGTGRIGCKRWVNDTF
Subjt:  MFSSSQFDSGSGFTSSQVPDSTSAKSRESPGLVPVTVKQISEAFHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFVVDDGTGRIGCKRWVNDTF

Query:  DTKQMDDIQDGMYIRVNGHLKIFQGNRQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQ-LNGVASTQSQSSDSTVKALVQSGSSGYQTASSELSSGQ
        DTKQMD+IQDGMYIRVNGHLKIFQ N+QIFAFSVRP+TN DEITFHFIECIH++LRNSKLQ LNGV STQ QSSDS VK  +Q+GSSGYQTASS L S Q
Subjt:  DTKQMDDIQDGMYIRVNGHLKIFQGNRQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQ-LNGVASTQSQSSDSTVKALVQSGSSGYQTASSELSSGQ

Query:  HTVDVKKNPDDLVLDYLQLPSSVAKEKGIHRDELSQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFKSAA
        HTVDVKKN DDL+LDYLQLPSSVAKE+GIHRDELSQQLKIP+EKIL+SIRSLEDEGLIYST+DEFHFKSAA
Subjt:  HTVDVKKNPDDLVLDYLQLPSSVAKEKGIHRDELSQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFKSAA

KAG7024504.1 Replication protein A 32 kDa subunit A [Cucurbita argyrosperma subsp. argyrosperma]1.8e-12688.19Show/hide
Query:  MFSSSQFDSGSGFTSSQVPDSTSAKSRESPGLVPVTVKQISEAFHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFVVDDGTGRIGCKRWVNDTF
        MFSSSQFDSGSGFTSSQ  DS+SAK+RE+PGLVP TVKQISEA HSGEEKANF INGVDITNVTIVGKVSEKAERNTDITF+VDDGTGRIGCKRWVNDTF
Subjt:  MFSSSQFDSGSGFTSSQVPDSTSAKSRESPGLVPVTVKQISEAFHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFVVDDGTGRIGCKRWVNDTF

Query:  DTKQMDDIQDGMYIRVNGHLKIFQGNRQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQ-LNGVASTQSQSSDSTVKALVQSGSSGYQTASSELSSGQ
        DTKQMD+IQDGMYIRVNGHLKIFQ N+QIFAFSVRP+TN DEITFHFIECIH++LRNSKLQ LNGV STQ QSSDS VK  +Q+GSSGYQTASS L S Q
Subjt:  DTKQMDDIQDGMYIRVNGHLKIFQGNRQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQ-LNGVASTQSQSSDSTVKALVQSGSSGYQTASSELSSGQ

Query:  HTVDVKKNPDDLVLDYLQLPSSVAKEKGIHRDELSQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFKSAA
        HTVDVKKN DDL+LDYLQLPSSVAKE+GIHRDELSQQLKIP+EKIL+SIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  HTVDVKKNPDDLVLDYLQLPSSVAKEKGIHRDELSQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFKSAA

XP_022145139.1 replication protein A 32 kDa subunit A [Momordica charantia]7.1e-14499.26Show/hide
Query:  MFSSSQFDSGSGFTSSQVPDSTSAKSRESPGLVPVTVKQISEAFHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFVVDDGTGRIGCKRWVNDTF
        MFSSSQFDSGSGFTSSQVPDSTSAKSRESPGLVPVTVKQISEAFHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFVVDDGTGRIGCKRWVNDTF
Subjt:  MFSSSQFDSGSGFTSSQVPDSTSAKSRESPGLVPVTVKQISEAFHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFVVDDGTGRIGCKRWVNDTF

Query:  DTKQMDDIQDGMYIRVNGHLKIFQGNRQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQLNGVASTQSQSSDSTVKALVQSGSSGYQTASSELSSGQH
        DTKQMDDIQDGMYIRVNGHLKIFQGN QIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQLNGVASTQSQSSDSTV ALVQSGSSGYQTASSELSSGQH
Subjt:  DTKQMDDIQDGMYIRVNGHLKIFQGNRQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQLNGVASTQSQSSDSTVKALVQSGSSGYQTASSELSSGQH

Query:  TVDVKKNPDDLVLDYLQLPSSVAKEKGIHRDELSQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFKSAA
        TVDVKKNPDDLVLDYLQLPSSVAKEKGIHRDELSQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  TVDVKKNPDDLVLDYLQLPSSVAKEKGIHRDELSQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFKSAA

XP_022936562.1 replication protein A 32 kDa subunit A-like [Cucurbita moschata]4.7e-12788.56Show/hide
Query:  MFSSSQFDSGSGFTSSQVPDSTSAKSRESPGLVPVTVKQISEAFHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFVVDDGTGRIGCKRWVNDTF
        MFSSSQFDSGSGFTSSQ  DS+SAK+RE+PGLVP TVKQISEA HSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITF+VDDGTGRIGCKRWVNDTF
Subjt:  MFSSSQFDSGSGFTSSQVPDSTSAKSRESPGLVPVTVKQISEAFHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFVVDDGTGRIGCKRWVNDTF

Query:  DTKQMDDIQDGMYIRVNGHLKIFQGNRQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQ-LNGVASTQSQSSDSTVKALVQSGSSGYQTASSELSSGQ
        DTKQMD+IQDGMYIRVNGHLKIFQ N+QIFAFSVRP+TN DEITFHFIECIH++LRNSKLQ LNGV STQ QSSDS VK  +Q+GSSGYQTASS L S Q
Subjt:  DTKQMDDIQDGMYIRVNGHLKIFQGNRQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQ-LNGVASTQSQSSDSTVKALVQSGSSGYQTASSELSSGQ

Query:  HTVDVKKNPDDLVLDYLQLPSSVAKEKGIHRDELSQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFKSAA
        HTVDVKKN DDL+LDYLQLPSSVAKE+GIHRDELSQQLKIP+EKIL+SIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  HTVDVKKNPDDLVLDYLQLPSSVAKEKGIHRDELSQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFKSAA

XP_023524340.1 replication protein A 32 kDa subunit A-like [Cucurbita pepo subsp. pepo]4.7e-12788.89Show/hide
Query:  MFSSSQFDSGSGFTSSQVPDSTSAKSRESPGLVPVTVKQISEAFHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFVVDDGTGRIGCKRWVNDTF
        MFSSSQFDSGSGFTSSQ  DS+ +KSRE+PG+VPVTVKQISEA HSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITF+VDDGTGRIGCKRWVNDTF
Subjt:  MFSSSQFDSGSGFTSSQVPDSTSAKSRESPGLVPVTVKQISEAFHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFVVDDGTGRIGCKRWVNDTF

Query:  DTKQMDDIQDGMYIRVNGHLKIFQGNRQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQLNGVASTQSQSSDSTVKALVQSGSSGYQTASSELSSGQH
        DTKQMD+IQDGMY+RV GHLKIFQ N+QIFAFSVRPVTN DEITFHFIECIHD+LRNSKLQ NG  STQ QSSDS+VK  VQSGSSGYQTASS LSS QH
Subjt:  DTKQMDDIQDGMYIRVNGHLKIFQGNRQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQLNGVASTQSQSSDSTVKALVQSGSSGYQTASSELSSGQH

Query:  TVDVKKNPDDLVLDYLQLPSSVAKEKGIHRDELSQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFKSAA
        TVDVKKN D+LVLDYLQLPSSVAKE+GIHRDELSQQLKIPLEKI+DSIRSLEDEGLIYSTIDE+HFKSAA
Subjt:  TVDVKKNPDDLVLDYLQLPSSVAKEKGIHRDELSQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFKSAA

TrEMBL top hitse value%identityAlignment
A0A0A0LEG7 Uncharacterized protein1.8e-12184.5Show/hide
Query:  MFSSSQFDSGSGFTSSQVPDSTSAKSRESPGLVPVTVKQISEAFHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFVVDDGTGRIGCKRWVNDTF
        MFSS+QFDS SGFTSSQ  DS+SAKSRESPGL+PVTVKQISEA HSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITF VDDGTG IGCKRWVNDTF
Subjt:  MFSSSQFDSGSGFTSSQVPDSTSAKSRESPGLVPVTVKQISEAFHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFVVDDGTGRIGCKRWVNDTF

Query:  DTKQMDDIQDGMYIRVNGHLKIFQGNRQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQ-LNGVASTQSQSSDSTVKALVQSGSSGYQTASSELSSGQ
        DT QM++IQDGMY+RVNGHLK+FQ N+QIFAFSVRPVTN DEITFHFIECIHD+LRNSKLQ L G  STQ Q+SDS VK  VQ+GS+GY T SS + S Q
Subjt:  DTKQMDDIQDGMYIRVNGHLKIFQGNRQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQ-LNGVASTQSQSSDSTVKALVQSGSSGYQTASSELSSGQ

Query:  HTVDVKKNPDDLVLDYLQLPSSVAKEKGIHRDELSQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFKSAA
        HTVDVKK+ D+LVLDYLQLPSSVAKE+GIH+DELSQQLK+P+EKILDSIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  HTVDVKKNPDDLVLDYLQLPSSVAKEKGIHRDELSQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFKSAA

A0A1S3CR64 replication protein A 32 kDa subunit A-like9.8e-12385.98Show/hide
Query:  MFSSSQFDSGSGFTSSQVPDSTSAKSRESPGLVPVTVKQISEAFHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFVVDDGTGRIGCKRWVNDTF
        MFSS+QFDSGSGFTSSQ  DS+SAKSRESPGLVPVTVKQISEA HSGEEKANFVIN VDITNVTIVGKVSEKAERNTDITF VDDGTG IGCKRWVNDTF
Subjt:  MFSSSQFDSGSGFTSSQVPDSTSAKSRESPGLVPVTVKQISEAFHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFVVDDGTGRIGCKRWVNDTF

Query:  DTKQMDDIQDGMYIRVNGHLKIFQGNRQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQ-LNGVASTQSQSSDSTVKALVQSGSSGYQTASSELSSGQ
        DTKQM++IQDGMY+RVNGHLK+FQ N+QIFAFSVRPVTN DEITFHF+ECIHD+LRNSKLQ L G  STQ Q+SDS VK  VQ+GSSGY T SS + S Q
Subjt:  DTKQMDDIQDGMYIRVNGHLKIFQGNRQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQ-LNGVASTQSQSSDSTVKALVQSGSSGYQTASSELSSGQ

Query:  HTVDVKKNPDDLVLDYLQLPSSVAKEKGIHRDELSQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFKSAA
        HTVDVKK+ D+LVLDYLQLPSSVAKE+GIHRDELSQQLKIP+EKILDSIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  HTVDVKKNPDDLVLDYLQLPSSVAKEKGIHRDELSQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFKSAA

A0A6J1CUB8 replication protein A 32 kDa subunit A3.5e-14499.26Show/hide
Query:  MFSSSQFDSGSGFTSSQVPDSTSAKSRESPGLVPVTVKQISEAFHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFVVDDGTGRIGCKRWVNDTF
        MFSSSQFDSGSGFTSSQVPDSTSAKSRESPGLVPVTVKQISEAFHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFVVDDGTGRIGCKRWVNDTF
Subjt:  MFSSSQFDSGSGFTSSQVPDSTSAKSRESPGLVPVTVKQISEAFHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFVVDDGTGRIGCKRWVNDTF

Query:  DTKQMDDIQDGMYIRVNGHLKIFQGNRQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQLNGVASTQSQSSDSTVKALVQSGSSGYQTASSELSSGQH
        DTKQMDDIQDGMYIRVNGHLKIFQGN QIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQLNGVASTQSQSSDSTV ALVQSGSSGYQTASSELSSGQH
Subjt:  DTKQMDDIQDGMYIRVNGHLKIFQGNRQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQLNGVASTQSQSSDSTVKALVQSGSSGYQTASSELSSGQH

Query:  TVDVKKNPDDLVLDYLQLPSSVAKEKGIHRDELSQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFKSAA
        TVDVKKNPDDLVLDYLQLPSSVAKEKGIHRDELSQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  TVDVKKNPDDLVLDYLQLPSSVAKEKGIHRDELSQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFKSAA

A0A6J1F8S8 replication protein A 32 kDa subunit A-like2.3e-12788.56Show/hide
Query:  MFSSSQFDSGSGFTSSQVPDSTSAKSRESPGLVPVTVKQISEAFHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFVVDDGTGRIGCKRWVNDTF
        MFSSSQFDSGSGFTSSQ  DS+SAK+RE+PGLVP TVKQISEA HSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITF+VDDGTGRIGCKRWVNDTF
Subjt:  MFSSSQFDSGSGFTSSQVPDSTSAKSRESPGLVPVTVKQISEAFHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFVVDDGTGRIGCKRWVNDTF

Query:  DTKQMDDIQDGMYIRVNGHLKIFQGNRQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQ-LNGVASTQSQSSDSTVKALVQSGSSGYQTASSELSSGQ
        DTKQMD+IQDGMYIRVNGHLKIFQ N+QIFAFSVRP+TN DEITFHFIECIH++LRNSKLQ LNGV STQ QSSDS VK  +Q+GSSGYQTASS L S Q
Subjt:  DTKQMDDIQDGMYIRVNGHLKIFQGNRQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQ-LNGVASTQSQSSDSTVKALVQSGSSGYQTASSELSSGQ

Query:  HTVDVKKNPDDLVLDYLQLPSSVAKEKGIHRDELSQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFKSAA
        HTVDVKKN DDL+LDYLQLPSSVAKE+GIHRDELSQQLKIP+EKIL+SIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  HTVDVKKNPDDLVLDYLQLPSSVAKEKGIHRDELSQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFKSAA

A0A6J1IMU1 replication protein A 32 kDa subunit A-like1.0e-12487.18Show/hide
Query:  MFSSSQFDSGSGFTSSQVPDSTSAKSRESPGLVPVTVKQISEAFHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFVVDDGTGRIGCKRWVNDTF
        MFSSSQFDSGSGFT SQ  DS+SAK+RE+PGLVP TVKQISEA HSGEEKANF INGVDITNVTIVGKVSEKAERNTDITF+VDDGTGRIGCKRWVNDTF
Subjt:  MFSSSQFDSGSGFTSSQVPDSTSAKSRESPGLVPVTVKQISEAFHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFVVDDGTGRIGCKRWVNDTF

Query:  DTKQMDDIQDGMYIRVNGHLKIFQGNRQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQ-LNGVASTQSQSSDSTVKALVQSGSSGYQTAS--SELSS
        DTKQMD+IQDGMYIRVNGHLKIFQ N+QIFAFSVRP+TN DEITFHFIECIH++LRNSKLQ LNGV STQ QSSDS VK  +Q+GSSGYQTAS  S L S
Subjt:  DTKQMDDIQDGMYIRVNGHLKIFQGNRQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQ-LNGVASTQSQSSDSTVKALVQSGSSGYQTAS--SELSS

Query:  GQHTVDVKKNPDDLVLDYLQLPSSVAKEKGIHRDELSQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFKSAA
         QHTVDVKKN DDL+LDYLQLPSSVAKE+GIHRDELSQQLKIP+EKIL+SIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  GQHTVDVKKNPDDLVLDYLQLPSSVAKEKGIHRDELSQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFKSAA

SwissProt top hitse value%identityAlignment
Q5Z8L1 Replication protein A 32 kDa subunit C1.0e-2336.69Show/hide
Query:  SGSGFTSSQVPDSTSAKSRESPGLVPVTVKQISEAFHS-----GEEKANFVINGVDITNVTIVGKVSEKAERNTDITFVVDDGTGRIGCKRWVNDTFDTK
        S +G  ++  P  +  +     G VP TV  IS +F +     G     F I+GV+ TNV ++G+V     R+TD+ F +DD TG+I   RW+ D  DT+
Subjt:  SGSGFTSSQVPDSTSAKSRESPGLVPVTVKQISEAFHS-----GEEKANFVINGVDITNVTIVGKVSEKAERNTDITFVVDDGTGRIGCKRWVNDTFDTK

Query:  QMDDIQDGMYIRVNGHLKIFQGNRQIFAFSVRPVTNCDEITFHFIECIHDYLRN--SKLQLNGVASTQS
            IQ+G+Y++V  +L  FQ  +Q  A S+RP+ N +E+  HFIEC+H +L +  SK+Q     S Q+
Subjt:  QMDDIQDGMYIRVNGHLKIFQGNRQIFAFSVRPVTNCDEITFHFIECIHDYLRN--SKLQLNGVASTQS

Q6H7J5 Replication protein A 32 kDa subunit B3.3e-4335.64Show/hide
Query:  SSSQFDSGSGFTSSQVPDSTSA---------KSRESPGLVPVTVKQISEAFHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFVVDDGTGRIGCK
        ++S    G GF  SQ  ++            KSR +  L+P+TVKQI +A  + ++K+NF +NG++++ V +VG++  K +R TD++F +DDGTGR+   
Subjt:  SSSQFDSGSGFTSSQVPDSTSA---------KSRESPGLVPVTVKQISEAFHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFVVDDGTGRIGCK

Query:  RWVNDTFDTKQMDDIQDGMYIRVNGHLKIFQGNRQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQLNGVASTQSQSSDSTVKALVQSGSSGYQTASS
        RW ND+ DTK+M DIQ+G Y+ VNG LK FQG RQ+ A+SVR +TN +++T HF+ C+H +L  ++ +    A+T + + + T+     + +    T  +
Subjt:  RWVNDTFDTKQMDDIQDGMYIRVNGHLKIFQGNRQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQLNGVASTQSQSSDSTVKALVQSGSSGYQTASS

Query:  ELSSGQHTVDVKKNPDDLVLDYLQLPSSVAKEKGIHRDELSQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFKS
           S         N  DLVL+    P+ +  + G+  D +S++L +P E +   I    D G +Y+TID+ H+KS
Subjt:  ELSSGQHTVDVKKNPDDLVLDYLQLPSSVAKEKGIHRDELSQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFKS

Q6K9U2 Replication protein A 32 kDa subunit A1.1e-4643.06Show/hide
Query:  MFSSSQFD--SGSGFTSSQ---VPDSTSAKSRESPGLVPVTVKQISEAFHS---GEEKANFVINGVDITNVTIVGKVSEKAERNTDITFVVDDGTGRIGC
        M S SQ D  S S FTSSQ      +T +KSR +   +P+TVKQISEA  S   GE+ A FV++GV+  NV +VG VS K ERNTD++F +DDGTGR+  
Subjt:  MFSSSQFD--SGSGFTSSQ---VPDSTSAKSRESPGLVPVTVKQISEAFHS---GEEKANFVINGVDITNVTIVGKVSEKAERNTDITFVVDDGTGRIGC

Query:  KRWVNDTFDTKQMDDIQDGMYIRVNGHLKIFQGNRQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQLNGVASTQSQSSDSTVKALVQSGSSGYQTAS
         RWVND  D+ +   +Q+GMY+ V G LK  Q  ++  AF++RPVT+ +E+T HFI+C+  +L N+K Q+   A T S    S+      +G S   T +
Subjt:  KRWVNDTFDTKQMDDIQDGMYIRVNGHLKIFQGNRQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQLNGVASTQSQSSDSTVKALVQSGSSGYQTAS

Query:  SELSSGQHTVDV----KKNPDDLVLDYLQLPSSVAKEKGIHRDELSQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFKSA
        S  S+    + V    K + +  VL+  + P++V  E G+H DE+ ++ ++P  KI  +I  L D G IYSTIDE H+KSA
Subjt:  SELSSGQHTVDV----KKNPDDLVLDYLQLPSSVAKEKGIHRDELSQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFKSA

Q8LFJ8 Replication protein A 32 kDa subunit B4.2e-4638.69Show/hide
Query:  FSSSQFDSGSGFTSSQV-----PDSTSAKSRESPGLVPVTVKQISEAFHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFVVDDGTGRIGCKRWV
        F  +   +G GF  SQ        S+S K+R+   L+P+T+KQ+S A  +GE  +NF I+GVDI  V IVG++S    R T + FVVDDGTG + C RW 
Subjt:  FSSSQFDSGSGFTSSQV-----PDSTSAKSRESPGLVPVTVKQISEAFHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFVVDDGTGRIGCKRWV

Query:  NDTFDTKQMDDIQDGMYIRVNGHLKIFQGNRQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQLNGVASTQSQSSDSTVKALVQSGSSGYQTASSELS
        +   +T++M+ ++ GMY+R++GHLKIFQG R +  FSVRPVT+ +EI  HF EC++ ++ N+KL+   +    +        + + + +  YQT  S   
Subjt:  NDTFDTKQMDDIQDGMYIRVNGHLKIFQGNRQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQLNGVASTQSQSSDSTVKALVQSGSSGYQTASSELS

Query:  SGQHTVDVKKNPDDLVLDYLQLPSSVAKEKGIHRDELSQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFKSAA
          Q   D        VL+YL  P  +  E G+H D ++++L+IPL ++ +++  L ++G IYST+DE  FKS A
Subjt:  SGQHTVDVKKNPDDLVLDYLQLPSSVAKEKGIHRDELSQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFKSAA

Q9ZQ19 Replication protein A 32 kDa subunit A1.9e-6750.18Show/hide
Query:  MFSSSQFD-----SGSGFTSSQ-----VPDSTSAKSRESPGLVPVTVKQISEAFHSGEEKANFVINGVDITNVTIVGKVSEKAE-RNTDITFVVDDGTGR
        MFSSSQF+     SG GF SSQ        S++AK+R+  GLVPVTVKQI+E F S  EK+  VING+ +TNV++VG V +K E + T++ F +DDGTGR
Subjt:  MFSSSQFD-----SGSGFTSSQ-----VPDSTSAKSRESPGLVPVTVKQISEAFHSGEEKANFVINGVDITNVTIVGKVSEKAE-RNTDITFVVDDGTGR

Query:  IGCKRWVNDTFDTKQMDDIQDGMYIRVNGHLKIFQGNRQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQLNGVAS-TQSQSSDSTVKALVQSGSSGY
        I CKRWV++TFD ++M+ ++DG Y+R++GHLK FQG  Q+  FSVRP+ + +E+TFH+IECIH Y +NS+ Q   V   TQS      V    Q GS+  
Subjt:  IGCKRWVNDTFDTKQMDDIQDGMYIRVNGHLKIFQGNRQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQLNGVAS-TQSQSSDSTVKALVQSGSSGY

Query:  QTA--SSELSSGQHTVDVKKNPDDLVLDYLQLPSSVAKEKGIHRDELSQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFK
        Q    +  +SS  +  + +KN DD++LDYL+ P+  A+++GIH DE++QQLKIP  K+   ++SLE +GLIYSTIDE+HFK
Subjt:  QTA--SSELSSGQHTVDVKKNPDDLVLDYLQLPSSVAKEKGIHRDELSQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFK

Arabidopsis top hitse value%identityAlignment
AT2G24490.1 replicon protein A21.4e-6850.18Show/hide
Query:  MFSSSQFD-----SGSGFTSSQ-----VPDSTSAKSRESPGLVPVTVKQISEAFHSGEEKANFVINGVDITNVTIVGKVSEKAE-RNTDITFVVDDGTGR
        MFSSSQF+     SG GF SSQ        S++AK+R+  GLVPVTVKQI+E F S  EK+  VING+ +TNV++VG V +K E + T++ F +DDGTGR
Subjt:  MFSSSQFD-----SGSGFTSSQ-----VPDSTSAKSRESPGLVPVTVKQISEAFHSGEEKANFVINGVDITNVTIVGKVSEKAE-RNTDITFVVDDGTGR

Query:  IGCKRWVNDTFDTKQMDDIQDGMYIRVNGHLKIFQGNRQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQLNGVAS-TQSQSSDSTVKALVQSGSSGY
        I CKRWV++TFD ++M+ ++DG Y+R++GHLK FQG  Q+  FSVRP+ + +E+TFH+IECIH Y +NS+ Q   V   TQS      V    Q GS+  
Subjt:  IGCKRWVNDTFDTKQMDDIQDGMYIRVNGHLKIFQGNRQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQLNGVAS-TQSQSSDSTVKALVQSGSSGY

Query:  QTA--SSELSSGQHTVDVKKNPDDLVLDYLQLPSSVAKEKGIHRDELSQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFK
        Q    +  +SS  +  + +KN DD++LDYL+ P+  A+++GIH DE++QQLKIP  K+   ++SLE +GLIYSTIDE+HFK
Subjt:  QTA--SSELSSGQHTVDVKKNPDDLVLDYLQLPSSVAKEKGIHRDELSQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFK

AT2G24490.2 replicon protein A21.4e-6850.18Show/hide
Query:  MFSSSQFD-----SGSGFTSSQ-----VPDSTSAKSRESPGLVPVTVKQISEAFHSGEEKANFVINGVDITNVTIVGKVSEKAE-RNTDITFVVDDGTGR
        MFSSSQF+     SG GF SSQ        S++AK+R+  GLVPVTVKQI+E F S  EK+  VING+ +TNV++VG V +K E + T++ F +DDGTGR
Subjt:  MFSSSQFD-----SGSGFTSSQ-----VPDSTSAKSRESPGLVPVTVKQISEAFHSGEEKANFVINGVDITNVTIVGKVSEKAE-RNTDITFVVDDGTGR

Query:  IGCKRWVNDTFDTKQMDDIQDGMYIRVNGHLKIFQGNRQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQLNGVAS-TQSQSSDSTVKALVQSGSSGY
        I CKRWV++TFD ++M+ ++DG Y+R++GHLK FQG  Q+  FSVRP+ + +E+TFH+IECIH Y +NS+ Q   V   TQS      V    Q GS+  
Subjt:  IGCKRWVNDTFDTKQMDDIQDGMYIRVNGHLKIFQGNRQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQLNGVAS-TQSQSSDSTVKALVQSGSSGY

Query:  QTA--SSELSSGQHTVDVKKNPDDLVLDYLQLPSSVAKEKGIHRDELSQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFK
        Q    +  +SS  +  + +KN DD++LDYL+ P+  A+++GIH DE++QQLKIP  K+   ++SLE +GLIYSTIDE+HFK
Subjt:  QTA--SSELSSGQHTVDVKKNPDDLVLDYLQLPSSVAKEKGIHRDELSQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFK

AT3G02920.1 Replication protein A, subunit RPA323.0e-4738.69Show/hide
Query:  FSSSQFDSGSGFTSSQV-----PDSTSAKSRESPGLVPVTVKQISEAFHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFVVDDGTGRIGCKRWV
        F  +   +G GF  SQ        S+S K+R+   L+P+T+KQ+S A  +GE  +NF I+GVDI  V IVG++S    R T + FVVDDGTG + C RW 
Subjt:  FSSSQFDSGSGFTSSQV-----PDSTSAKSRESPGLVPVTVKQISEAFHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFVVDDGTGRIGCKRWV

Query:  NDTFDTKQMDDIQDGMYIRVNGHLKIFQGNRQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQLNGVASTQSQSSDSTVKALVQSGSSGYQTASSELS
        +   +T++M+ ++ GMY+R++GHLKIFQG R +  FSVRPVT+ +EI  HF EC++ ++ N+KL+   +    +        + + + +  YQT  S   
Subjt:  NDTFDTKQMDDIQDGMYIRVNGHLKIFQGNRQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQLNGVASTQSQSSDSTVKALVQSGSSGYQTASSELS

Query:  SGQHTVDVKKNPDDLVLDYLQLPSSVAKEKGIHRDELSQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFKSAA
          Q   D        VL+YL  P  +  E G+H D ++++L+IPL ++ +++  L ++G IYST+DE  FKS A
Subjt:  SGQHTVDVKKNPDDLVLDYLQLPSSVAKEKGIHRDELSQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFKSAA

AT3G02920.2 Replication protein A, subunit RPA321.1e-4639.36Show/hide
Query:  TSAKSRESPGLVPVTVKQISEAFHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFVVDDGTGRIGCKRWVNDTFDTKQMDDIQDGMYIRVNGHLK
        +S ++R+   L+P+T+KQ+S A  +GE  +NF I+GVDI  V IVG++S    R T + FVVDDGTG + C RW +   +T++M+ ++ GMY+R++GHLK
Subjt:  TSAKSRESPGLVPVTVKQISEAFHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFVVDDGTGRIGCKRWVNDTFDTKQMDDIQDGMYIRVNGHLK

Query:  IFQGNRQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQLNGVASTQSQSSDSTVKALVQSGSSGYQTASSELSSGQHTVDVKKNPDDLVLDYLQLPSS
        IFQG R +  FSVRPVT+ +EI  HF EC++ ++ N+KL+   +    +        + + + +  YQT  S     Q   D        VL+YL  P  
Subjt:  IFQGNRQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQLNGVASTQSQSSDSTVKALVQSGSSGYQTASSELSSGQHTVDVKKNPDDLVLDYLQLPSS

Query:  VAKEKGIHRDELSQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFKSAA
        +  E G+H D ++++L+IPL ++ +++  L ++G IYST+DE  FKS A
Subjt:  VAKEKGIHRDELSQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFKSAA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCTCCAGCAGCCAGTTTGATTCCGGCAGTGGATTTACGTCCTCCCAGGTCCCCGACTCCACTTCGGCGAAGAGTCGAGAATCGCCGGGTTTAGTTCCAGTAACTGT
AAAACAGATAAGCGAAGCTTTCCATTCCGGCGAAGAGAAGGCCAACTTTGTAATCAATGGCGTTGACATTACAAATGTTACAATCGTTGGGAAGGTCTCTGAAAAAGCTG
AAAGGAATACTGACATCACATTCGTTGTAGATGATGGAACAGGAAGAATTGGCTGCAAAAGATGGGTAAACGATACATTTGATACTAAGCAAATGGATGACATACAAGAC
GGAATGTACATACGGGTGAATGGGCATTTGAAAATATTTCAAGGCAACAGGCAAATATTCGCATTTTCCGTAAGGCCTGTCACAAATTGTGATGAAATTACCTTCCACTT
TATTGAATGCATACATGACTACTTGCGGAATTCCAAGTTGCAGCTCAATGGAGTTGCATCAACACAATCCCAATCCTCGGATTCAACTGTGAAGGCCCTGGTGCAGAGTG
GCTCGAGTGGATACCAGACAGCATCTTCAGAACTATCATCTGGGCAACACACTGTAGATGTTAAAAAGAATCCTGATGATTTGGTCCTTGATTATCTGCAGCTGCCCTCC
AGCGTAGCAAAAGAAAAGGGGATACACAGAGATGAACTTTCCCAACAACTGAAAATTCCTTTGGAGAAAATACTGGACTCCATTAGGTCTCTTGAAGATGAAGGTTTGAT
ATATTCCACCATTGATGAGTTTCATTTCAAGTCTGCTGCA
mRNA sequenceShow/hide mRNA sequence
ATGTTCTCCAGCAGCCAGTTTGATTCCGGCAGTGGATTTACGTCCTCCCAGGTCCCCGACTCCACTTCGGCGAAGAGTCGAGAATCGCCGGGTTTAGTTCCAGTAACTGT
AAAACAGATAAGCGAAGCTTTCCATTCCGGCGAAGAGAAGGCCAACTTTGTAATCAATGGCGTTGACATTACAAATGTTACAATCGTTGGGAAGGTCTCTGAAAAAGCTG
AAAGGAATACTGACATCACATTCGTTGTAGATGATGGAACAGGAAGAATTGGCTGCAAAAGATGGGTAAACGATACATTTGATACTAAGCAAATGGATGACATACAAGAC
GGAATGTACATACGGGTGAATGGGCATTTGAAAATATTTCAAGGCAACAGGCAAATATTCGCATTTTCCGTAAGGCCTGTCACAAATTGTGATGAAATTACCTTCCACTT
TATTGAATGCATACATGACTACTTGCGGAATTCCAAGTTGCAGCTCAATGGAGTTGCATCAACACAATCCCAATCCTCGGATTCAACTGTGAAGGCCCTGGTGCAGAGTG
GCTCGAGTGGATACCAGACAGCATCTTCAGAACTATCATCTGGGCAACACACTGTAGATGTTAAAAAGAATCCTGATGATTTGGTCCTTGATTATCTGCAGCTGCCCTCC
AGCGTAGCAAAAGAAAAGGGGATACACAGAGATGAACTTTCCCAACAACTGAAAATTCCTTTGGAGAAAATACTGGACTCCATTAGGTCTCTTGAAGATGAAGGTTTGAT
ATATTCCACCATTGATGAGTTTCATTTCAAGTCTGCTGCA
Protein sequenceShow/hide protein sequence
MFSSSQFDSGSGFTSSQVPDSTSAKSRESPGLVPVTVKQISEAFHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFVVDDGTGRIGCKRWVNDTFDTKQMDDIQD
GMYIRVNGHLKIFQGNRQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQLNGVASTQSQSSDSTVKALVQSGSSGYQTASSELSSGQHTVDVKKNPDDLVLDYLQLPS
SVAKEKGIHRDELSQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFKSAA