; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS008448 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS008448
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRibosomal RNA large subunit methyltransferase H
Genome locationscaffold4:1489943..1491470
RNA-Seq ExpressionMS008448
SyntenyMS008448
Gene Ontology termsGO:0006364 - rRNA processing (biological process)
GO:0032259 - methylation (biological process)
GO:0008168 - methyltransferase activity (molecular function)
InterPro domainsIPR003742 - RNA methyltransferase RlmH
IPR029026 - tRNA (guanine-N1-)-methyltransferase, N-terminal
IPR029028 - Alpha/beta knot methyltransferases


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7037551.1 putative RNA methyltransferase [Cucurbita argyrosperma subsp. argyrosperma]1.5e-6991.33Show/hide
Query:  MDNGQRAVPIRVLTVGKKRSRGVQLVVDEYIEKLKHYCNVEDVQLRSNPRNARDPRAQVDDEDMAVLNLLKSDDWVVMLDENGKEMSSERMAELVADAGN
        MDN QRAVPIRVLTVGKKRSRGVQL++DEYI+KL +YCNVEDVQLRSNPRNARDPRAQVDDED+AV+NLLKSDDWVVMLDENGKE+SSE+MAELVADAGN
Subjt:  MDNGQRAVPIRVLTVGKKRSRGVQLVVDEYIEKLKHYCNVEDVQLRSNPRNARDPRAQVDDEDMAVLNLLKSDDWVVMLDENGKEMSSERMAELVADAGN

Query:  TGASRLSFCIGGPYGHGQQLRQRANLTIKLSSMVLNHQIALLVLMEQLYR
        TGASRL+FCIGGPYGHGQQLRQRAN++IKLSSMVLNHQIALLVLMEQLYR
Subjt:  TGASRLSFCIGGPYGHGQQLRQRANLTIKLSSMVLNHQIALLVLMEQLYR

XP_022131264.1 putative RNA methyltransferase At5g10620 isoform X2 [Momordica charantia]7.1e-7299.31Show/hide
Query:  RAVPIRVLTVGKKRSRGVQLVVDEYIEKLKHYCNVEDVQLRSNPRNARDPRAQVDDEDMAVLNLLKSDDWVVMLDENGKEMSSERMAELVADAGNTGASR
        RAVPIRVLTVGKKRSRGVQLVVDEYIEKLKHYCNVEDVQLRSNPRNARDPRAQVDDEDMAV+NLLKSDDWVVMLDENGKEMSSERMAELVADAGNTGASR
Subjt:  RAVPIRVLTVGKKRSRGVQLVVDEYIEKLKHYCNVEDVQLRSNPRNARDPRAQVDDEDMAVLNLLKSDDWVVMLDENGKEMSSERMAELVADAGNTGASR

Query:  LSFCIGGPYGHGQQLRQRANLTIKLSSMVLNHQIALLVLMEQLYR
        LSFCIGGPYGHGQQLRQRANLTIKLSSMVLNHQIALLVLMEQLYR
Subjt:  LSFCIGGPYGHGQQLRQRANLTIKLSSMVLNHQIALLVLMEQLYR

XP_022159857.1 putative RNA methyltransferase At5g10620 isoform X1 [Momordica charantia]7.1e-7299.31Show/hide
Query:  RAVPIRVLTVGKKRSRGVQLVVDEYIEKLKHYCNVEDVQLRSNPRNARDPRAQVDDEDMAVLNLLKSDDWVVMLDENGKEMSSERMAELVADAGNTGASR
        RAVPIRVLTVGKKRSRGVQLVVDEYIEKLKHYCNVEDVQLRSNPRNARDPRAQVDDEDMAV+NLLKSDDWVVMLDENGKEMSSERMAELVADAGNTGASR
Subjt:  RAVPIRVLTVGKKRSRGVQLVVDEYIEKLKHYCNVEDVQLRSNPRNARDPRAQVDDEDMAVLNLLKSDDWVVMLDENGKEMSSERMAELVADAGNTGASR

Query:  LSFCIGGPYGHGQQLRQRANLTIKLSSMVLNHQIALLVLMEQLYR
        LSFCIGGPYGHGQQLRQRANLTIKLSSMVLNHQIALLVLMEQLYR
Subjt:  LSFCIGGPYGHGQQLRQRANLTIKLSSMVLNHQIALLVLMEQLYR

XP_038896820.1 putative RNA methyltransferase At5g10620 isoform X1 [Benincasa hispida]7.9e-7192.76Show/hide
Query:  MDNGQRAVPIRVLTVGKKRSRGVQLVVDEYIEKLKHYCNVEDVQLRSNPRNARDPRAQVDDEDMAVLNLLKSDDWVVMLDENGKEMSSERMAELVADAGN
        MDNGQRAVPIRVLTVGKKRSRGVQL+VDEYIEKLK+YC++EDV LRSNPRNARDPRAQVDDEDMAV+NLLKSDDWVVMLDENGKEMSSE+MA+LVADAG 
Subjt:  MDNGQRAVPIRVLTVGKKRSRGVQLVVDEYIEKLKHYCNVEDVQLRSNPRNARDPRAQVDDEDMAVLNLLKSDDWVVMLDENGKEMSSERMAELVADAGN

Query:  TGASRLSFCIGGPYGHGQQLRQRANLTIKLSSMVLNHQIALLVLMEQLYRLL
        TGASRLSFCIGGPYGHGQQLRQRANL+IKLSSMVLNHQIALLVLMEQLYR+L
Subjt:  TGASRLSFCIGGPYGHGQQLRQRANLTIKLSSMVLNHQIALLVLMEQLYRLL

XP_038896822.1 putative RNA methyltransferase At5g10620 isoform X3 [Benincasa hispida]1.3e-7093.33Show/hide
Query:  MDNGQRAVPIRVLTVGKKRSRGVQLVVDEYIEKLKHYCNVEDVQLRSNPRNARDPRAQVDDEDMAVLNLLKSDDWVVMLDENGKEMSSERMAELVADAGN
        MDNGQRAVPIRVLTVGKKRSRGVQL+VDEYIEKLK+YC++EDV LRSNPRNARDPRAQVDDEDMAV+NLLKSDDWVVMLDENGKEMSSE+MA+LVADAG 
Subjt:  MDNGQRAVPIRVLTVGKKRSRGVQLVVDEYIEKLKHYCNVEDVQLRSNPRNARDPRAQVDDEDMAVLNLLKSDDWVVMLDENGKEMSSERMAELVADAGN

Query:  TGASRLSFCIGGPYGHGQQLRQRANLTIKLSSMVLNHQIALLVLMEQLYR
        TGASRLSFCIGGPYGHGQQLRQRANL+IKLSSMVLNHQIALLVLMEQLYR
Subjt:  TGASRLSFCIGGPYGHGQQLRQRANLTIKLSSMVLNHQIALLVLMEQLYR

TrEMBL top hitse value%identityAlignment
A0A1S3CQZ8 putative RNA methyltransferase At5g106205.7e-6791.03Show/hide
Query:  RAVPIRVLTVGKKRSRGVQLVVDEYIEKLKHYCNVEDVQLRSNPRNARDPRAQVDDEDMAVLNLLKSDDWVVMLDENGKEMSSERMAELVADAGNTGASR
        RAVPIRVLTVGKKRSRGVQL+VDEYI+KLK+YC+VEDVQLRSNPRNARDP+AQ+DDED+AV+NLLKSDDWVVMLDENGKE+SSE+MAELVADAGNTGASR
Subjt:  RAVPIRVLTVGKKRSRGVQLVVDEYIEKLKHYCNVEDVQLRSNPRNARDPRAQVDDEDMAVLNLLKSDDWVVMLDENGKEMSSERMAELVADAGNTGASR

Query:  LSFCIGGPYGHGQQLRQRANLTIKLSSMVLNHQIALLVLMEQLYR
        LSFCIGGPYGHGQ+LR+RANL+IKLSSMVLNHQIALLVLMEQLYR
Subjt:  LSFCIGGPYGHGQQLRQRANLTIKLSSMVLNHQIALLVLMEQLYR

A0A6J1BP95 putative RNA methyltransferase At5g10620 isoform X31.4e-6897.24Show/hide
Query:  RAVPIRVLTVGKKRSRGVQLVVDEYIEKLKHYCNVEDVQLRSNPRNARDPRAQVDDEDMAVLNLLKSDDWVVMLDENGKEMSSERMAELVADAGNTGASR
        RAVPIRVLTVGKKRSRGVQLVVDEYIEKLKHYCNVEDVQLRSNPRNA   RAQVDDEDMAV+NLLKSDDWVVMLDENGKEMSSERMAELVADAGNTGASR
Subjt:  RAVPIRVLTVGKKRSRGVQLVVDEYIEKLKHYCNVEDVQLRSNPRNARDPRAQVDDEDMAVLNLLKSDDWVVMLDENGKEMSSERMAELVADAGNTGASR

Query:  LSFCIGGPYGHGQQLRQRANLTIKLSSMVLNHQIALLVLMEQLYR
        LSFCIGGPYGHGQQLRQRANLTIKLSSMVLNHQIALLVLMEQLYR
Subjt:  LSFCIGGPYGHGQQLRQRANLTIKLSSMVLNHQIALLVLMEQLYR

A0A6J1BPR4 putative RNA methyltransferase At5g10620 isoform X23.5e-7299.31Show/hide
Query:  RAVPIRVLTVGKKRSRGVQLVVDEYIEKLKHYCNVEDVQLRSNPRNARDPRAQVDDEDMAVLNLLKSDDWVVMLDENGKEMSSERMAELVADAGNTGASR
        RAVPIRVLTVGKKRSRGVQLVVDEYIEKLKHYCNVEDVQLRSNPRNARDPRAQVDDEDMAV+NLLKSDDWVVMLDENGKEMSSERMAELVADAGNTGASR
Subjt:  RAVPIRVLTVGKKRSRGVQLVVDEYIEKLKHYCNVEDVQLRSNPRNARDPRAQVDDEDMAVLNLLKSDDWVVMLDENGKEMSSERMAELVADAGNTGASR

Query:  LSFCIGGPYGHGQQLRQRANLTIKLSSMVLNHQIALLVLMEQLYR
        LSFCIGGPYGHGQQLRQRANLTIKLSSMVLNHQIALLVLMEQLYR
Subjt:  LSFCIGGPYGHGQQLRQRANLTIKLSSMVLNHQIALLVLMEQLYR

A0A6J1E0Z2 putative RNA methyltransferase At5g10620 isoform X13.5e-7299.31Show/hide
Query:  RAVPIRVLTVGKKRSRGVQLVVDEYIEKLKHYCNVEDVQLRSNPRNARDPRAQVDDEDMAVLNLLKSDDWVVMLDENGKEMSSERMAELVADAGNTGASR
        RAVPIRVLTVGKKRSRGVQLVVDEYIEKLKHYCNVEDVQLRSNPRNARDPRAQVDDEDMAV+NLLKSDDWVVMLDENGKEMSSERMAELVADAGNTGASR
Subjt:  RAVPIRVLTVGKKRSRGVQLVVDEYIEKLKHYCNVEDVQLRSNPRNARDPRAQVDDEDMAVLNLLKSDDWVVMLDENGKEMSSERMAELVADAGNTGASR

Query:  LSFCIGGPYGHGQQLRQRANLTIKLSSMVLNHQIALLVLMEQLYR
        LSFCIGGPYGHGQQLRQRANLTIKLSSMVLNHQIALLVLMEQLYR
Subjt:  LSFCIGGPYGHGQQLRQRANLTIKLSSMVLNHQIALLVLMEQLYR

A0A6J1FPF2 putative RNA methyltransferase At5g106202.0e-6791.72Show/hide
Query:  RAVPIRVLTVGKKRSRGVQLVVDEYIEKLKHYCNVEDVQLRSNPRNARDPRAQVDDEDMAVLNLLKSDDWVVMLDENGKEMSSERMAELVADAGNTGASR
        RAVPIRVLTVGKKRSRGVQL++DEYI+KL +YCNVEDVQLRSNPRNARDPRAQVDDED+AV+NLLKSDDWVVMLDENGKE+SSE+MAELVADAGNTGASR
Subjt:  RAVPIRVLTVGKKRSRGVQLVVDEYIEKLKHYCNVEDVQLRSNPRNARDPRAQVDDEDMAVLNLLKSDDWVVMLDENGKEMSSERMAELVADAGNTGASR

Query:  LSFCIGGPYGHGQQLRQRANLTIKLSSMVLNHQIALLVLMEQLYR
        L+FCIGGPYGHGQQLRQRAN++IKLSSMVLNHQIALLVLMEQLYR
Subjt:  LSFCIGGPYGHGQQLRQRANLTIKLSSMVLNHQIALLVLMEQLYR

SwissProt top hitse value%identityAlignment
A0M0D0 Ribosomal RNA large subunit methyltransferase H8.1e-1836.3Show/hide
Query:  IRVLTVGKKRSRGVQLVVDEYIEKLKHYCNVE-----DVQLRSNPRNARDPRAQVDDEDMAVLNLLKSDDWVVMLDENGKEMSSERMAELVADAGNTGAS
        I+++ +GK   + ++ ++  Y ++L+HY   E     D++   N     D   Q   E   +L+ +++ D+VV+LDENGK+ SSE  +E +    NTG  
Subjt:  IRVLTVGKKRSRGVQLVVDEYIEKLKHYCNVE-----DVQLRSNPRNARDPRAQVDDEDMAVLNLLKSDDWVVMLDENGKEMSSERMAELVADAGNTGAS

Query:  RLSFCIGGPYGHGQQLRQRANLTIKLSSMVLNHQIALLVLMEQLYR
        RL F IGGPYG  +++ +RA+  I LS M  +HQ+  L   EQLYR
Subjt:  RLSFCIGGPYGHGQQLRQRANLTIKLSSMVLNHQIALLVLMEQLYR

A0PXE8 Ribosomal RNA large subunit methyltransferase H2.3e-1735.86Show/hide
Query:  IRVLTVGKKRSRGVQLVVDEYIEKLKHYCNVEDVQL--RSNPRNA--RDPRAQVDDEDMAVLNLLKSDDWVVMLDENGKEMSSERMAELVADAGNTGASR
        I ++ VGK + + ++L +DEY ++L  YC +  V+L     P NA  +D       E   +L  +K + +V+ LD NGK  SSE +AEL+ D G  G S 
Subjt:  IRVLTVGKKRSRGVQLVVDEYIEKLKHYCNVEDVQL--RSNPRNA--RDPRAQVDDEDMAVLNLLKSDDWVVMLDENGKEMSSERMAELVADAGNTGASR

Query:  LSFCIGGPYGHGQQLRQRANLTIKLSSMVLNHQIALLVLMEQLYR
        ++  IGG  G  +++  RAN  +  S M   HQ+  ++L+EQ+YR
Subjt:  LSFCIGGPYGHGQQLRQRANLTIKLSSMVLNHQIALLVLMEQLYR

B2TRC7 Ribosomal RNA large subunit methyltransferase H3.4e-1634.48Show/hide
Query:  IRVLTVGKKRSRGVQLVVDEYIEKLKHYC--NVEDVQLRSNPRNA--RDPRAQVDDEDMAVLNLLKSDDWVVMLDENGKEMSSERMAELVADAGNTGASR
        I +++VGK + + ++  +DEY ++L  YC  N+ ++Q    P NA  +D     D E   +LN +K + +V+ LD  GK MSSE +++ + + G  G S 
Subjt:  IRVLTVGKKRSRGVQLVVDEYIEKLKHYC--NVEDVQLRSNPRNA--RDPRAQVDDEDMAVLNLLKSDDWVVMLDENGKEMSSERMAELVADAGNTGASR

Query:  LSFCIGGPYGHGQQLRQRANLTIKLSSMVLNHQIALLVLMEQLYR
        L F IGG  G  + + +R+N ++  S M   HQ+  ++L+EQ+YR
Subjt:  LSFCIGGPYGHGQQLRQRANLTIKLSSMVLNHQIALLVLMEQLYR

Q1DCX5 Ribosomal RNA large subunit methyltransferase H4.0e-1739.72Show/hide
Query:  IRVLTVGKKRSRGVQLVVDEYIEKLKHYCNVEDVQLRSNPRNARDPRAQVDDEDMAVLNLLKSDDWVVMLDENGKEMSSERMAELVADAGNTGASRLSFC
        +R+L++GK RS   +  V EY ++L HY   E V++         P      E  A+L+  K  DW+V LDE G  + S  ++  V  A  TGA  L F 
Subjt:  IRVLTVGKKRSRGVQLVVDEYIEKLKHYCNVEDVQLRSNPRNARDPRAQVDDEDMAVLNLLKSDDWVVMLDENGKEMSSERMAELVADAGNTGASRLSFC

Query:  IGGPYGHGQQLRQRANLTIKLSSMVLNHQIALLVLMEQLYR
        IGG  G   ++R  ANLT+ LS M L H++A +VL+EQLYR
Subjt:  IGGPYGHGQQLRQRANLTIKLSSMVLNHQIALLVLMEQLYR

Q9LXB4 Putative RNA methyltransferase At5g106209.1e-5471.72Show/hide
Query:  RAVPIRVLTVGKKRSRGVQLVVDEYIEKLKHYCNVEDVQLRSNPRNARDPRAQVDDEDMAVLNLLKSDDWVVMLDENGKEMSSERMAELVADAGNTGASR
        RA+PIRV+TVGKKRS GV+L+VDEY  KLK YC+ ED  +RSNPRNA+D RAQV+DE++A++ L+ SDDWVV+LDE G+++ SE+MAEL+ DAGN+GASR
Subjt:  RAVPIRVLTVGKKRSRGVQLVVDEYIEKLKHYCNVEDVQLRSNPRNARDPRAQVDDEDMAVLNLLKSDDWVVMLDENGKEMSSERMAELVADAGNTGASR

Query:  LSFCIGGPYGHGQQLRQRANLTIKLSSMVLNHQIALLVLMEQLYR
        +SFCIGG YGHG Q+R+RAN+TI+LSSMVLNHQIAL+VLMEQLYR
Subjt:  LSFCIGGPYGHGQQLRQRANLTIKLSSMVLNHQIALLVLMEQLYR

Arabidopsis top hitse value%identityAlignment
AT5G10605.1 methyltransferases5.9e-0875Show/hide
Query:  GGPYGHGQQLRQRANLTIKLSSMVLNHQIALLVLME
        G  YGHG+QLR+RAN+ I+LSSMVLNH IAL+VLME
Subjt:  GGPYGHGQQLRQRANLTIKLSSMVLNHQIALLVLME

AT5G10605.2 methyltransferases5.9e-0875Show/hide
Query:  GGPYGHGQQLRQRANLTIKLSSMVLNHQIALLVLME
        G  YGHG+QLR+RAN+ I+LSSMVLNH IAL+VLME
Subjt:  GGPYGHGQQLRQRANLTIKLSSMVLNHQIALLVLME

AT5G10620.1 methyltransferases6.5e-5571.72Show/hide
Query:  RAVPIRVLTVGKKRSRGVQLVVDEYIEKLKHYCNVEDVQLRSNPRNARDPRAQVDDEDMAVLNLLKSDDWVVMLDENGKEMSSERMAELVADAGNTGASR
        RA+PIRV+TVGKKRS GV+L+VDEY  KLK YC+ ED  +RSNPRNA+D RAQV+DE++A++ L+ SDDWVV+LDE G+++ SE+MAEL+ DAGN+GASR
Subjt:  RAVPIRVLTVGKKRSRGVQLVVDEYIEKLKHYCNVEDVQLRSNPRNARDPRAQVDDEDMAVLNLLKSDDWVVMLDENGKEMSSERMAELVADAGNTGASR

Query:  LSFCIGGPYGHGQQLRQRANLTIKLSSMVLNHQIALLVLMEQLYR
        +SFCIGG YGHG Q+R+RAN+TI+LSSMVLNHQIAL+VLMEQLYR
Subjt:  LSFCIGGPYGHGQQLRQRANLTIKLSSMVLNHQIALLVLMEQLYR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAATGGACAGAGAGCGGTGCCAATACGGGTTTTGACTGTGGGGAAGAAGAGGTCTCGTGGCGTGCAACTCGTCGTTGATGAGTATATTGAAAAGCTTAAGCATTA
CTGTAACGTAGAAGATGTTCAACTGCGGTCAAATCCTAGGAATGCGCGGGATCCCAGGGCTCAGGTTGACGATGAAGATATGGCTGTACTGAATCTTCTCAAGTCTGACG
ATTGGGTTGTTATGTTGGATGAGAATGGGAAAGAGATGAGCTCTGAGCGGATGGCTGAGTTGGTGGCAGATGCAGGCAATACAGGTGCTTCAAGATTATCATTTTGCATT
GGGGGACCTTATGGCCATGGGCAACAACTGCGACAACGAGCTAACTTAACAATCAAGCTGTCCTCCATGGTCTTAAATCATCAAATTGCATTACTTGTACTTATGGAACA
ACTTTACAGGTTACTTTTTTTTACC
mRNA sequenceShow/hide mRNA sequence
ATGGACAATGGACAGAGAGCGGTGCCAATACGGGTTTTGACTGTGGGGAAGAAGAGGTCTCGTGGCGTGCAACTCGTCGTTGATGAGTATATTGAAAAGCTTAAGCATTA
CTGTAACGTAGAAGATGTTCAACTGCGGTCAAATCCTAGGAATGCGCGGGATCCCAGGGCTCAGGTTGACGATGAAGATATGGCTGTACTGAATCTTCTCAAGTCTGACG
ATTGGGTTGTTATGTTGGATGAGAATGGGAAAGAGATGAGCTCTGAGCGGATGGCTGAGTTGGTGGCAGATGCAGGCAATACAGGTGCTTCAAGATTATCATTTTGCATT
GGGGGACCTTATGGCCATGGGCAACAACTGCGACAACGAGCTAACTTAACAATCAAGCTGTCCTCCATGGTCTTAAATCATCAAATTGCATTACTTGTACTTATGGAACA
ACTTTACAGGTTACTTTTTTTTACC
Protein sequenceShow/hide protein sequence
MDNGQRAVPIRVLTVGKKRSRGVQLVVDEYIEKLKHYCNVEDVQLRSNPRNARDPRAQVDDEDMAVLNLLKSDDWVVMLDENGKEMSSERMAELVADAGNTGASRLSFCI
GGPYGHGQQLRQRANLTIKLSSMVLNHQIALLVLMEQLYRLLFFT