; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS008474 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS008474
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionpolyadenylate-binding protein-interacting protein 5-like
Genome locationscaffold4:1697101..1697994
RNA-Seq ExpressionMS008474
SyntenyMS008474
Gene Ontology termsGO:0043130 - ubiquitin binding (molecular function)
InterPro domainsIPR003892 - Ubiquitin system component CUE
IPR009060 - UBA-like superfamily
IPR038981 - Polyadenylate-binding protein-interacting protein 5/6
IPR041806 - Polyadenylate-binding protein-interacting protein 5/6/7, CUE domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038789.1 polyadenylate-binding protein-interacting protein 5 [Cucumis melo var. makuwa]2.8e-5762.24Show/hide
Query:  MKPLGSSLNPYAASYIPLSKREADKNFIAENSSKKSIGGNFSGYSEHYMHNPPYDSISPNSNLRLGEKAPIAVGSAMKNHPSHGSLSQHKSEFNEMVEMF
        MKP GSSLNP+A SYIPLS+R A++ FIAEN+S+++IG N  GYSE  ++ P  +SISP  N+  G+KA +A  SA+KNHP HGSLSQ  S+ +EM E+F
Subjt:  MKPLGSSLNPYAASYIPLSKREADKNFIAENSSKKSIGGNFSGYSEHYMHNPPYDSISPNSNLRLGEKAPIAVGSAMKNHPSHGSLSQHKSEFNEMVEMF

Query:  DKDFDLDLEFLKASFPGLSDQSLTDVYLANKGDVDAAIDMLSLLENKQPFGSEDYVPEGLPDSLDIGDMSEYGFAADNQPSFKMKNVVGNASTSFR
        D++ ++DLE L+ SFPGLS+QSLTDVY ANKGD+DAAIDMLS LENK P   E Y  E LPD+LDIGD+SE GF   +QPSF+MKNV   ASTS R
Subjt:  DKDFDLDLEFLKASFPGLSDQSLTDVYLANKGDVDAAIDMLSLLENKQPFGSEDYVPEGLPDSLDIGDMSEYGFAADNQPSFKMKNVVGNASTSFR

XP_004136335.1 polyadenylate-binding protein-interacting protein 5 [Cucumis sativus]2.8e-5762.94Show/hide
Query:  MKPLGSSLNPYAASYIPLSKREADKNFIAENSSKKSIGGNFSGYSEHYMHNPPY-DSISPNSNLRLGEKAPIAVGSAMKNHPSHGSLSQHKSEFNEMVEM
        MKP GSSLNP+A SYIPLS+R A++ FI EN+S+++IG N  GYSE  ++NPPY +SISP  N+  G+KA +A G+A+KNHP  GSLSQ  S+  EM EM
Subjt:  MKPLGSSLNPYAASYIPLSKREADKNFIAENSSKKSIGGNFSGYSEHYMHNPPY-DSISPNSNLRLGEKAPIAVGSAMKNHPSHGSLSQHKSEFNEMVEM

Query:  FDKDFDLDLEFLKASFPGLSDQSLTDVYLANKGDVDAAIDMLSLLENKQPFGSEDYVPEGLPDSLDIGDMSEYGFAADNQPSFKMKNVVGNASTSFR
        FD++ ++D+E L+ SFPGLS+QSLTDVY ANKGD+DAAIDMLS LENK P   E Y PE LPD+LDIGD+SE GF   +QPSF+MKNV   ASTS R
Subjt:  FDKDFDLDLEFLKASFPGLSDQSLTDVYLANKGDVDAAIDMLSLLENKQPFGSEDYVPEGLPDSLDIGDMSEYGFAADNQPSFKMKNVVGNASTSFR

XP_008466368.1 PREDICTED: polyadenylate-binding protein-interacting protein 5 [Cucumis melo]2.8e-5762.24Show/hide
Query:  MKPLGSSLNPYAASYIPLSKREADKNFIAENSSKKSIGGNFSGYSEHYMHNPPYDSISPNSNLRLGEKAPIAVGSAMKNHPSHGSLSQHKSEFNEMVEMF
        MKP GSSLNP+A SYIPLS+R A++ FIAEN+S+++IG N  GYSE  ++ P  +SISP  N+  G+KA +A  SA+KNHP HGSLSQ  S+ +EM E+F
Subjt:  MKPLGSSLNPYAASYIPLSKREADKNFIAENSSKKSIGGNFSGYSEHYMHNPPYDSISPNSNLRLGEKAPIAVGSAMKNHPSHGSLSQHKSEFNEMVEMF

Query:  DKDFDLDLEFLKASFPGLSDQSLTDVYLANKGDVDAAIDMLSLLENKQPFGSEDYVPEGLPDSLDIGDMSEYGFAADNQPSFKMKNVVGNASTSFR
        D++ ++DLE L+ SFPGLS+QSLTDVY ANKGD+DAAIDMLS LENK P   E Y  E LPD+LDIGD+SE GF   +QPSF+MKNV   ASTS R
Subjt:  DKDFDLDLEFLKASFPGLSDQSLTDVYLANKGDVDAAIDMLSLLENKQPFGSEDYVPEGLPDSLDIGDMSEYGFAADNQPSFKMKNVVGNASTSFR

XP_022141760.1 polyadenylate-binding protein-interacting protein 5-like [Momordica charantia]1.6e-10599.49Show/hide
Query:  MKPLGSSLNPYAASYIPLSKREADKNFIAENSSKKSIGGNFSGYSEHYMHNPPYDSISPNSNLRLGEKAPIAVGSAMKNHPSHGSLSQHKSEFNEMVEMF
        MKPLGSSLNPYAASYIPLSKREADKNFIAENSSKKSIGGNFSGYSEHYMHNPPYDSISPNSNLRLGEKAPIAVGSAMKNHPSHGSLSQHKSEFNEMVEMF
Subjt:  MKPLGSSLNPYAASYIPLSKREADKNFIAENSSKKSIGGNFSGYSEHYMHNPPYDSISPNSNLRLGEKAPIAVGSAMKNHPSHGSLSQHKSEFNEMVEMF

Query:  DKDFDLDLEFLKASFPGLSDQSLTDVYLANKGDVDAAIDMLSLLENKQPFGSEDYVPEGLPDSLDIGDMSEYGFAADNQPSFKMKNVVGNASTSFRS
        DKDFDLDLEFLKASFPGLSDQSLTDVYLANKGDVDAAIDMLSLLENKQPFGSEDYVPEGLPDSLDIGD+SEYGFAADNQPSFKMKNVVGNASTSFRS
Subjt:  DKDFDLDLEFLKASFPGLSDQSLTDVYLANKGDVDAAIDMLSLLENKQPFGSEDYVPEGLPDSLDIGDMSEYGFAADNQPSFKMKNVVGNASTSFRS

XP_038900178.1 polyadenylate-binding protein-interacting protein 5-like [Benincasa hispida]2.6e-5859.43Show/hide
Query:  MKPLGSSLNPYAASYIPLSKREADKNFIAENS----------------SKKSIGGNFSGYSEHYMHNPPYDSISPNSNLRLGEKAPIAVGSAMKNHPSHG
        M P GSSLNPYA SYIPLS+R A++ F+AENS                S+++IG N  GYSE  ++NPPY +ISP  N+  G+KAP+A  SA+KNHP HG
Subjt:  MKPLGSSLNPYAASYIPLSKREADKNFIAENS----------------SKKSIGGNFSGYSEHYMHNPPYDSISPNSNLRLGEKAPIAVGSAMKNHPSHG

Query:  SLSQHKSEFNEMVEMFDKDFDLDLEFLKASFPGLSDQSLTDVYLANKGDVDAAIDMLSLLENKQPFGSEDYVPEGLPDSLDIGDMSEYGFAADNQPSFKM
        SLSQ   +  EM EMFD++ ++DLE L+ SFPGLS+QSLTDVY ANKGD+DAAIDMLS LENK P   E Y PE LPD+LDIGD+SE GF A +Q SF+M
Subjt:  SLSQHKSEFNEMVEMFDKDFDLDLEFLKASFPGLSDQSLTDVYLANKGDVDAAIDMLSLLENKQPFGSEDYVPEGLPDSLDIGDMSEYGFAADNQPSFKM

Query:  KNVVGNASTSFR
        KNV  +ASTS R
Subjt:  KNVVGNASTSFR

TrEMBL top hitse value%identityAlignment
A0A0A0LHC3 CUE domain-containing protein1.4e-5762.94Show/hide
Query:  MKPLGSSLNPYAASYIPLSKREADKNFIAENSSKKSIGGNFSGYSEHYMHNPPY-DSISPNSNLRLGEKAPIAVGSAMKNHPSHGSLSQHKSEFNEMVEM
        MKP GSSLNP+A SYIPLS+R A++ FI EN+S+++IG N  GYSE  ++NPPY +SISP  N+  G+KA +A G+A+KNHP  GSLSQ  S+  EM EM
Subjt:  MKPLGSSLNPYAASYIPLSKREADKNFIAENSSKKSIGGNFSGYSEHYMHNPPY-DSISPNSNLRLGEKAPIAVGSAMKNHPSHGSLSQHKSEFNEMVEM

Query:  FDKDFDLDLEFLKASFPGLSDQSLTDVYLANKGDVDAAIDMLSLLENKQPFGSEDYVPEGLPDSLDIGDMSEYGFAADNQPSFKMKNVVGNASTSFR
        FD++ ++D+E L+ SFPGLS+QSLTDVY ANKGD+DAAIDMLS LENK P   E Y PE LPD+LDIGD+SE GF   +QPSF+MKNV   ASTS R
Subjt:  FDKDFDLDLEFLKASFPGLSDQSLTDVYLANKGDVDAAIDMLSLLENKQPFGSEDYVPEGLPDSLDIGDMSEYGFAADNQPSFKMKNVVGNASTSFR

A0A1S3CR41 polyadenylate-binding protein-interacting protein 51.4e-5762.24Show/hide
Query:  MKPLGSSLNPYAASYIPLSKREADKNFIAENSSKKSIGGNFSGYSEHYMHNPPYDSISPNSNLRLGEKAPIAVGSAMKNHPSHGSLSQHKSEFNEMVEMF
        MKP GSSLNP+A SYIPLS+R A++ FIAEN+S+++IG N  GYSE  ++ P  +SISP  N+  G+KA +A  SA+KNHP HGSLSQ  S+ +EM E+F
Subjt:  MKPLGSSLNPYAASYIPLSKREADKNFIAENSSKKSIGGNFSGYSEHYMHNPPYDSISPNSNLRLGEKAPIAVGSAMKNHPSHGSLSQHKSEFNEMVEMF

Query:  DKDFDLDLEFLKASFPGLSDQSLTDVYLANKGDVDAAIDMLSLLENKQPFGSEDYVPEGLPDSLDIGDMSEYGFAADNQPSFKMKNVVGNASTSFR
        D++ ++DLE L+ SFPGLS+QSLTDVY ANKGD+DAAIDMLS LENK P   E Y  E LPD+LDIGD+SE GF   +QPSF+MKNV   ASTS R
Subjt:  DKDFDLDLEFLKASFPGLSDQSLTDVYLANKGDVDAAIDMLSLLENKQPFGSEDYVPEGLPDSLDIGDMSEYGFAADNQPSFKMKNVVGNASTSFR

A0A5A7TBQ8 Polyadenylate-binding protein-interacting protein 51.4e-5762.24Show/hide
Query:  MKPLGSSLNPYAASYIPLSKREADKNFIAENSSKKSIGGNFSGYSEHYMHNPPYDSISPNSNLRLGEKAPIAVGSAMKNHPSHGSLSQHKSEFNEMVEMF
        MKP GSSLNP+A SYIPLS+R A++ FIAEN+S+++IG N  GYSE  ++ P  +SISP  N+  G+KA +A  SA+KNHP HGSLSQ  S+ +EM E+F
Subjt:  MKPLGSSLNPYAASYIPLSKREADKNFIAENSSKKSIGGNFSGYSEHYMHNPPYDSISPNSNLRLGEKAPIAVGSAMKNHPSHGSLSQHKSEFNEMVEMF

Query:  DKDFDLDLEFLKASFPGLSDQSLTDVYLANKGDVDAAIDMLSLLENKQPFGSEDYVPEGLPDSLDIGDMSEYGFAADNQPSFKMKNVVGNASTSFR
        D++ ++DLE L+ SFPGLS+QSLTDVY ANKGD+DAAIDMLS LENK P   E Y  E LPD+LDIGD+SE GF   +QPSF+MKNV   ASTS R
Subjt:  DKDFDLDLEFLKASFPGLSDQSLTDVYLANKGDVDAAIDMLSLLENKQPFGSEDYVPEGLPDSLDIGDMSEYGFAADNQPSFKMKNVVGNASTSFR

A0A6J1CJ15 polyadenylate-binding protein-interacting protein 5-like7.9e-10699.49Show/hide
Query:  MKPLGSSLNPYAASYIPLSKREADKNFIAENSSKKSIGGNFSGYSEHYMHNPPYDSISPNSNLRLGEKAPIAVGSAMKNHPSHGSLSQHKSEFNEMVEMF
        MKPLGSSLNPYAASYIPLSKREADKNFIAENSSKKSIGGNFSGYSEHYMHNPPYDSISPNSNLRLGEKAPIAVGSAMKNHPSHGSLSQHKSEFNEMVEMF
Subjt:  MKPLGSSLNPYAASYIPLSKREADKNFIAENSSKKSIGGNFSGYSEHYMHNPPYDSISPNSNLRLGEKAPIAVGSAMKNHPSHGSLSQHKSEFNEMVEMF

Query:  DKDFDLDLEFLKASFPGLSDQSLTDVYLANKGDVDAAIDMLSLLENKQPFGSEDYVPEGLPDSLDIGDMSEYGFAADNQPSFKMKNVVGNASTSFRS
        DKDFDLDLEFLKASFPGLSDQSLTDVYLANKGDVDAAIDMLSLLENKQPFGSEDYVPEGLPDSLDIGD+SEYGFAADNQPSFKMKNVVGNASTSFRS
Subjt:  DKDFDLDLEFLKASFPGLSDQSLTDVYLANKGDVDAAIDMLSLLENKQPFGSEDYVPEGLPDSLDIGDMSEYGFAADNQPSFKMKNVVGNASTSFRS

A0A6J1FM20 polyadenylate-binding protein-interacting protein 6-like9.8e-5661.22Show/hide
Query:  MKPLGSSLNPYAASYIPLSKREADKNFIAENSSKKSIGGNFSGYSEHYMHNPPYDSISPNSNLRLGEKAPIAVGSAMKNHPSHGSLSQHKSEFNEMVEMF
        MKP+GSSLNPYA SYIPLSKREA+K FI ENSS+ +IG    GYSEH+++NP YD ISP  N+  GEKAP +V SA+KNHP HG  S+      EM  MF
Subjt:  MKPLGSSLNPYAASYIPLSKREADKNFIAENSSKKSIGGNFSGYSEHYMHNPPYDSISPNSNLRLGEKAPIAVGSAMKNHPSHGSLSQHKSEFNEMVEMF

Query:  DKDFDLDLEFLKASFPGLSDQSLTDVYLANKGDVDAAIDMLSLLENKQPFGSEDYVPEGLPDSLDIGDMSEYGFAADNQPSFKMKNVVGNASTSFR
         ++  ++LE L  SFPGLSDQS+T+VY ANKGD+DAAIDML+ LENK     E Y P+ LPDSLDIGD+SE GFA  +QPSF+MK+  G   TS R
Subjt:  DKDFDLDLEFLKASFPGLSDQSLTDVYLANKGDVDAAIDMLSLLENKQPFGSEDYVPEGLPDSLDIGDMSEYGFAADNQPSFKMKNVVGNASTSFR

SwissProt top hitse value%identityAlignment
Q6NQH9 Polyadenylate-binding protein-interacting protein 69.6e-1634.34Show/hide
Query:  MKPLGSSLNPYAASYIPLSKRE---ADKNFIAENSSKKSIGGNFSGYSEHYMHNPPYD-SISPNSNLRLGEKAPIAVGSAMKNHPSHGSLSQHKSEFNEM
        MK   S+LNPYAA+Y+PLSKRE    D   + +   ++          +H+   P Y   +    + +  + +P       K  PS       +  +N  
Subjt:  MKPLGSSLNPYAASYIPLSKRE---ADKNFIAENSSKKSIGGNFSGYSEHYMHNPPYD-SISPNSNLRLGEKAPIAVGSAMKNHPSHGSLSQHKSEFNEM

Query:  VEMFDKDFDLDLEFLKASFPGLSDQSLTDVYLANKGDVDAAIDMLSLLENKQPFGSEDYVPEGLPDSLDIGDMSEYGFAADNQPSFKMKNVVGNASTS
        ++  D + D+D+E+L A++PGLS +S+ DVYLAN  D+DA I+ML+ LE    + +E    E LPD+LDIGD+ E         S K KN   +AS+S
Subjt:  VEMFDKDFDLDLEFLKASFPGLSDQSLTDVYLANKGDVDAAIDMLSLLENKQPFGSEDYVPEGLPDSLDIGDMSEYGFAADNQPSFKMKNVVGNASTS

Q9LYE5 Polyadenylate-binding protein-interacting protein 51.8e-1433.16Show/hide
Query:  MKPLGSSLNPYAASYIPLSKREADKNFIAENSSKKSIGGNFSGYSEHYMHNPPYDSISPNSNLRLGEKAPIAVGSAMKNHPSHGSLSQHKSEFNEMVEMF
        MKP   +LNP+AASY+P+SKR                GG   G                   L    K+P    S     P   S   +K   ++ +++ 
Subjt:  MKPLGSSLNPYAASYIPLSKREADKNFIAENSSKKSIGGNFSGYSEHYMHNPPYDSISPNSNLRLGEKAPIAVGSAMKNHPSHGSLSQHKSEFNEMVEMF

Query:  DKDFDLDLEFLKASFPGLSDQSLTDVYLANKGDVDAAIDMLSLLENKQPFGSEDYVPEGLPDSLDIGDMSEYG--FAADNQPSFKMKNVVGNASTS
        + D D+D+E+L  +F GLS +S+TDVYLAN GD++A I+ML+ LE    + +E    E LP++LDIGD+SE G   +   + +    +V+ NA  S
Subjt:  DKDFDLDLEFLKASFPGLSDQSLTDVYLANKGDVDAAIDMLSLLENKQPFGSEDYVPEGLPDSLDIGDMSEYG--FAADNQPSFKMKNVVGNASTS

Arabidopsis top hitse value%identityAlignment
AT5G11440.1 CTC-interacting domain 51.3e-1533.16Show/hide
Query:  MKPLGSSLNPYAASYIPLSKREADKNFIAENSSKKSIGGNFSGYSEHYMHNPPYDSISPNSNLRLGEKAPIAVGSAMKNHPSHGSLSQHKSEFNEMVEMF
        MKP   +LNP+AASY+P+SKR                GG   G                   L    K+P    S     P   S   +K   ++ +++ 
Subjt:  MKPLGSSLNPYAASYIPLSKREADKNFIAENSSKKSIGGNFSGYSEHYMHNPPYDSISPNSNLRLGEKAPIAVGSAMKNHPSHGSLSQHKSEFNEMVEMF

Query:  DKDFDLDLEFLKASFPGLSDQSLTDVYLANKGDVDAAIDMLSLLENKQPFGSEDYVPEGLPDSLDIGDMSEYG--FAADNQPSFKMKNVVGNASTS
        + D D+D+E+L  +F GLS +S+TDVYLAN GD++A I+ML+ LE    + +E    E LP++LDIGD+SE G   +   + +    +V+ NA  S
Subjt:  DKDFDLDLEFLKASFPGLSDQSLTDVYLANKGDVDAAIDMLSLLENKQPFGSEDYVPEGLPDSLDIGDMSEYG--FAADNQPSFKMKNVVGNASTS

AT5G25540.1 CTC-interacting domain 66.8e-1734.34Show/hide
Query:  MKPLGSSLNPYAASYIPLSKRE---ADKNFIAENSSKKSIGGNFSGYSEHYMHNPPYD-SISPNSNLRLGEKAPIAVGSAMKNHPSHGSLSQHKSEFNEM
        MK   S+LNPYAA+Y+PLSKRE    D   + +   ++          +H+   P Y   +    + +  + +P       K  PS       +  +N  
Subjt:  MKPLGSSLNPYAASYIPLSKRE---ADKNFIAENSSKKSIGGNFSGYSEHYMHNPPYD-SISPNSNLRLGEKAPIAVGSAMKNHPSHGSLSQHKSEFNEM

Query:  VEMFDKDFDLDLEFLKASFPGLSDQSLTDVYLANKGDVDAAIDMLSLLENKQPFGSEDYVPEGLPDSLDIGDMSEYGFAADNQPSFKMKNVVGNASTS
        ++  D + D+D+E+L A++PGLS +S+ DVYLAN  D+DA I+ML+ LE    + +E    E LPD+LDIGD+ E         S K KN   +AS+S
Subjt:  VEMFDKDFDLDLEFLKASFPGLSDQSLTDVYLANKGDVDAAIDMLSLLENKQPFGSEDYVPEGLPDSLDIGDMSEYGFAADNQPSFKMKNVVGNASTS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCCACTCGGATCATCTTTGAATCCATATGCAGCATCCTACATTCCACTCTCCAAGAGAGAGGCTGACAAAAATTTTATAGCAGAAAACTCTTCTAAGAAAAGTAT
AGGGGGCAACTTTTCGGGATATTCCGAACATTATATGCATAATCCTCCATATGACAGCATTTCCCCTAATTCAAACCTGCGACTTGGTGAAAAAGCACCTATTGCAGTTG
GTTCTGCTATGAAGAATCACCCCTCTCATGGATCATTGTCGCAACACAAGAGTGAATTCAATGAAATGGTGGAGATGTTTGATAAAGACTTTGATTTGGATCTGGAATTT
CTTAAGGCTAGTTTCCCTGGACTATCTGATCAGTCCCTTACTGATGTCTATTTGGCAAATAAAGGTGACGTGGATGCTGCTATAGACATGCTGAGCCTGCTCGAGAACAA
ACAGCCATTTGGTTCTGAAGATTATGTCCCTGAAGGTCTCCCGGACTCTTTGGACATTGGTGACATGTCGGAATACGGGTTTGCAGCTGATAATCAACCATCTTTCAAAA
TGAAGAATGTAGTCGGGAATGCAAGCACTTCATTCCGATCC
mRNA sequenceShow/hide mRNA sequence
ATGAAGCCACTCGGATCATCTTTGAATCCATATGCAGCATCCTACATTCCACTCTCCAAGAGAGAGGCTGACAAAAATTTTATAGCAGAAAACTCTTCTAAGAAAAGTAT
AGGGGGCAACTTTTCGGGATATTCCGAACATTATATGCATAATCCTCCATATGACAGCATTTCCCCTAATTCAAACCTGCGACTTGGTGAAAAAGCACCTATTGCAGTTG
GTTCTGCTATGAAGAATCACCCCTCTCATGGATCATTGTCGCAACACAAGAGTGAATTCAATGAAATGGTGGAGATGTTTGATAAAGACTTTGATTTGGATCTGGAATTT
CTTAAGGCTAGTTTCCCTGGACTATCTGATCAGTCCCTTACTGATGTCTATTTGGCAAATAAAGGTGACGTGGATGCTGCTATAGACATGCTGAGCCTGCTCGAGAACAA
ACAGCCATTTGGTTCTGAAGATTATGTCCCTGAAGGTCTCCCGGACTCTTTGGACATTGGTGACATGTCGGAATACGGGTTTGCAGCTGATAATCAACCATCTTTCAAAA
TGAAGAATGTAGTCGGGAATGCAAGCACTTCATTCCGATCC
Protein sequenceShow/hide protein sequence
MKPLGSSLNPYAASYIPLSKREADKNFIAENSSKKSIGGNFSGYSEHYMHNPPYDSISPNSNLRLGEKAPIAVGSAMKNHPSHGSLSQHKSEFNEMVEMFDKDFDLDLEF
LKASFPGLSDQSLTDVYLANKGDVDAAIDMLSLLENKQPFGSEDYVPEGLPDSLDIGDMSEYGFAADNQPSFKMKNVVGNASTSFRS