CuGenDBv2

Gene ID	MS008483
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	DNA-directed RNA polymerase subunit beta
Genome location	scaffold4:1739658..1742289
RNA-Seq Expression	MS008483
Synteny	MS008483
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004136341.2 uncharacterized protein LOC101205248 isoform X1 [Cucumis sativus]

1.2e-106

92.65

Show/hide

Query:  MSCCSSLSAAPTSMSLITKHKFPIAVDKPAIVSMNSRFRASAEVPDFLPADWNEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDQPHQDYGIEVMYQFAG
        MSCCSSLSAAP+SMSLIT  KF  +V+KP IVSMNSRFRASAEVPDFLPADW++AHKK+P+GP LHFTAEEAIQHQLDALRYND+PHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPTSMSLITKHKFPIAVDKPAIVSMNSRFRASAEVPDFLPADWNEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDQPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSCLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILS LFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSCLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

XP_008466381.1 PREDICTED: uncharacterized protein LOC103503805 [Cucumis melo]

1.0e-105

91.67

Show/hide

Query:  MSCCSSLSAAPTSMSLITKHKFPIAVDKPAIVSMNSRFRASAEVPDFLPADWNEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDQPHQDYGIEVMYQFAG
        MSCCSSLSAAP+SMSLIT  KF  +V+KP  VSMNSRFR SAEVPDFLPADW++AHKK+P+GP LHFTAEEAIQHQLDALRYND+PHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPTSMSLITKHKFPIAVDKPAIVSMNSRFRASAEVPDFLPADWNEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDQPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSCLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILS LFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSCLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

XP_022132533.1 uncharacterized protein LOC111005365 isoform X1 [Momordica charantia]

9.0e-115

99.51

Show/hide

Query:  MSCCSSLSAAPTSMSLITKHKFPIAVDKPAIVSMNSRFRASAEVPDFLPADWNEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDQPHQDYGIEVMYQFAG
        MSCCSSLSAAPTSMSLITK KFPIAVDKPAIVSMNSRFRASAEVPDFLPADWNEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDQPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPTSMSLITKHKFPIAVDKPAIVSMNSRFRASAEVPDFLPADWNEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDQPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSCLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSCLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSCLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

XP_022981205.1 uncharacterized protein LOC111480415 isoform X1 [Cucurbita maxima]

1.4e-104

91.67

Show/hide

Query:  MSCCSSLSAAPTSMSLITKHKFPIAVDKPAIVSMNSRFRASAEVPDFLPADWNEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDQPHQDYGIEVMYQFAG
        MSCCSSLSAAPTSMSLI+K KF  +V+K  IVSMNSRFRASAEVPDFLPADW++AHKKNPLGPSLHFTAEEAIQ QLDALRYND+PHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPTSMSLITKHKFPIAVDKPAIVSMNSRFRASAEVPDFLPADWNEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDQPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSCLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        F+PL+RSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILS L VEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTES+LNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSCLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

XP_038898556.1 uncharacterized protein LOC120086152 [Benincasa hispida]

1.7e-105

92.16

Show/hide

Query:  MSCCSSLSAAPTSMSLITKHKFPIAVDKPAIVSMNSRFRASAEVPDFLPADWNEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDQPHQDYGIEVMYQFAG
        MSCCSSLSAAPTSMSLIT  KF  +V+KP IVSM SRFRASAEVPDFLPADW++AHKK+P+GP LHFTAEEAIQHQLDALRYND+PHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPTSMSLITKHKFPIAVDKPAIVSMNSRFRASAEVPDFLPADWNEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDQPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSCLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILS LFVEEN FKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSCLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LED5 Uncharacterized protein

5.7e-107

92.65

Show/hide

Query:  MSCCSSLSAAPTSMSLITKHKFPIAVDKPAIVSMNSRFRASAEVPDFLPADWNEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDQPHQDYGIEVMYQFAG
        MSCCSSLSAAP+SMSLIT  KF  +V+KP IVSMNSRFRASAEVPDFLPADW++AHKK+P+GP LHFTAEEAIQHQLDALRYND+PHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPTSMSLITKHKFPIAVDKPAIVSMNSRFRASAEVPDFLPADWNEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDQPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSCLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILS LFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSCLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

A0A1S3CR52 uncharacterized protein LOC103503805

4.8e-106

91.67

Show/hide

Query:  MSCCSSLSAAPTSMSLITKHKFPIAVDKPAIVSMNSRFRASAEVPDFLPADWNEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDQPHQDYGIEVMYQFAG
        MSCCSSLSAAP+SMSLIT  KF  +V+KP  VSMNSRFR SAEVPDFLPADW++AHKK+P+GP LHFTAEEAIQHQLDALRYND+PHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPTSMSLITKHKFPIAVDKPAIVSMNSRFRASAEVPDFLPADWNEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDQPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSCLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILS LFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSCLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

A0A5D3E6H6 Uncharacterized protein

4.8e-106

91.67

Show/hide

Query:  MSCCSSLSAAPTSMSLITKHKFPIAVDKPAIVSMNSRFRASAEVPDFLPADWNEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDQPHQDYGIEVMYQFAG
        MSCCSSLSAAP+SMSLIT  KF  +V+KP  VSMNSRFR SAEVPDFLPADW++AHKK+P+GP LHFTAEEAIQHQLDALRYND+PHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPTSMSLITKHKFPIAVDKPAIVSMNSRFRASAEVPDFLPADWNEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDQPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSCLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILS LFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSCLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

A0A6J1BWI6 uncharacterized protein LOC111005365 isoform X1

4.3e-115

99.51

Show/hide

Query:  MSCCSSLSAAPTSMSLITKHKFPIAVDKPAIVSMNSRFRASAEVPDFLPADWNEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDQPHQDYGIEVMYQFAG
        MSCCSSLSAAPTSMSLITK KFPIAVDKPAIVSMNSRFRASAEVPDFLPADWNEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDQPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPTSMSLITKHKFPIAVDKPAIVSMNSRFRASAEVPDFLPADWNEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDQPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSCLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSCLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSCLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

A0A6J1IYU2 uncharacterized protein LOC111480415 isoform X1

7.0e-105

91.67

Show/hide

Query:  MSCCSSLSAAPTSMSLITKHKFPIAVDKPAIVSMNSRFRASAEVPDFLPADWNEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDQPHQDYGIEVMYQFAG
        MSCCSSLSAAPTSMSLI+K KF  +V+K  IVSMNSRFRASAEVPDFLPADW++AHKKNPLGPSLHFTAEEAIQ QLDALRYND+PHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPTSMSLITKHKFPIAVDKPAIVSMNSRFRASAEVPDFLPADWNEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDQPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSCLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        F+PL+RSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILS L VEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTES+LNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSCLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G25605.1 unknown protein

5.5e-78

67.68

Show/hide

Query:  LSAAPTSMSLITKHKFPIAVDKPAIVSMNSRFRASAEVPDFLPADWNEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDQPHQDYGIEVMYQFAGFDPLRR
        L + P+S+S   KH      +    ++ N    +S++VPDFL ADW E+ +K P GP L F+AE+A++HQLDAL+YND P  DYGIEVMY+FAGFDP  R
Subjt:  LSAAPTSMSLITKHKFPIAVDKPAIVSMNSRFRASAEVPDFLPADWNEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDQPHQDYGIEVMYQFAGFDPLRR

Query:  STYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSCLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY
        STYFGPFFDLGQFERFRR+FHHS+YRVLLGHK+RK+LS LFVEENRFKQR+WI+G RP+EEEIF+FTM QR+GGSWDGYWLTESLL+DGD FSGG+AY
Subjt:  STYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSCLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY

Sequences

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CDS sequence

Show/hide CDS sequence

ATGTCATGTTGTTCATCCCTATCAGCTGCTCCTACCTCCATGTCTTTGATTACCAAGCACAAATTCCCGATTGCTGTTGATAAACCTGCGATCGTTTCCATGAATTCTCG
ATTTAGAGCTTCCGCTGAAGTTCCTGATTTTCTCCCCGCAGATTGGAATGAAGCACACAAGAAGAATCCTCTAGGTCCAAGTTTACATTTTACTGCAGAGGAAGCTATTC
AACACCAGCTTGATGCACTGAGATACAACGATCAACCCCATCAAGATTATGGAATCGAGGTCATGTACCAGTTTGCTGGATTCGATCCTCTTCGAAGGTCTACATATTTC
GGTCCCTTCTTTGATTTGGGACAGTTTGAGAGATTCAGACGAGTGTTCCATCATTCGACCTATCGTGTATTGCTAGGCCATAAAGAGAGGAAGATCTTGAGCTGTTTGTT
TGTAGAGGAGAACCGATTCAAGCAGCGAGTATGGATACGGGGCTGTCGCCCCAAGGAAGAAGAAATATTTCAATTCACCATGGTTCAGAGGGTTGGTGGCTCATGGGATG
GGTATTGGCTTACAGAGAGCTTACTTAATGATGGGGATGCATTTAGTGGAGGCTTAGCGTAC

mRNA sequence

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Protein sequence

Show/hide protein sequence

MSCCSSLSAAPTSMSLITKHKFPIAVDKPAIVSMNSRFRASAEVPDFLPADWNEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDQPHQDYGIEVMYQFAGFDPLRRSTYF
GPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSCLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY

MS008483 (gene) of Bitter gourd (TR) v1 genome