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MS008500 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS008500
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCoatomer subunit zeta
Genome locationscaffold4:1834793..1836674
RNA-Seq ExpressionMS008500
SyntenyMS008500
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0006890 - retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum (biological process)
GO:0006891 - intra-Golgi vesicle-mediated transport (biological process)
GO:0000139 - Golgi membrane (cellular component)
GO:0030126 - COPI vesicle coat (cellular component)
InterPro domainsIPR011012 - Longin-like domain superfamily
IPR022775 - AP complex, mu/sigma subunit
IPR039652 - Coatomer subunit zeta


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038809.1 SNARE-like superfamily protein [Cucumis melo var. makuwa]2.9e-7597.96Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSSIKDACGK
        MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGD+AVYVVGKDEYDELALAEVIFVITS+IKDACGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSSIKDACGK

Query:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPTEF
        APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPP EF
Subjt:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPTEF

XP_008466411.1 PREDICTED: uncharacterized protein LOC103503824 [Cucumis melo]2.2e-7598.64Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSSIKDACGK
        MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITS+IKDACGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSSIKDACGK

Query:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPTEF
        APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPP EF
Subjt:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPTEF

XP_022134177.1 uncharacterized protein LOC111006502 [Momordica charantia]2.7e-76100Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSSIKDACGK
        MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSSIKDACGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSSIKDACGK

Query:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPTEF
        APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPTEF
Subjt:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPTEF

XP_022936551.1 uncharacterized protein LOC111443125 [Cucurbita moschata]1.9e-7497.28Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSSIKDACGK
        MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEEL+VASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFV+TSSIKDACGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSSIKDACGK

Query:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPTEF
        APTER FLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPP EF
Subjt:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPTEF

XP_038896955.1 TSET complex member tstD [Benincasa hispida]5.0e-7597.96Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSSIKDACGK
        MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITS+IKDACGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSSIKDACGK

Query:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPTEF
        +PTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPP EF
Subjt:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPTEF

TrEMBL top hitse value%identityAlignment
A0A1S3CRC6 Coatomer subunit zeta1.1e-7598.64Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSSIKDACGK
        MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITS+IKDACGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSSIKDACGK

Query:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPTEF
        APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPP EF
Subjt:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPTEF

A0A5A7TBS4 Coatomer subunit zeta1.4e-7597.96Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSSIKDACGK
        MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGD+AVYVVGKDEYDELALAEVIFVITS+IKDACGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSSIKDACGK

Query:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPTEF
        APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPP EF
Subjt:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPTEF

A0A5D3E691 Coatomer subunit zeta1.1e-7598.64Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSSIKDACGK
        MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITS+IKDACGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSSIKDACGK

Query:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPTEF
        APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPP EF
Subjt:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPTEF

A0A6J1BYX2 Coatomer subunit zeta1.3e-76100Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSSIKDACGK
        MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSSIKDACGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSSIKDACGK

Query:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPTEF
        APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPTEF
Subjt:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPTEF

A0A6J1IMX0 Coatomer subunit zeta9.2e-7597.28Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSSIKDACGK
        MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEEL+VASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFV+TSSIKDACGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSSIKDACGK

Query:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPTEF
        APTER FLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPP EF
Subjt:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPTEF

SwissProt top hitse value%identityAlignment
C0HLF1 TSET complex member tstD3.5e-1532.64Show/hide
Query:  MLLAVLIANSVGNILVERFH-GVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSSIKDAC-
        M+ ++LI N+ GNI+  +++  +  E++  +   L +   D    +KNE+  V        V+T +GD+ +++ G +E DELAL++V F I  S+KD C 
Subjt:  MLLAVLIANSVGNILVERFH-GVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSSIKDAC-

Query:  GKAPTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLK
         K  TE+ F+++  K  L LDEI+  G L+  + + I+    LK
Subjt:  GKAPTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLK

Q54CA7 Probable coatomer subunit zeta-B8.2e-0428.78Show/hide
Query:  AVLIANSVGNILVERFHGVPAE--ERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKD-EYDELALAEVIFVITSSIKDACGK
        A+++ ++ G  L   F+  P      L  +    KL  +  K   N EL +  +K   ++ +   DV ++VVG     +ELAL +V+  + S  K AC  
Subjt:  AVLIANSVGNILVERFHGVPAE--ERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKD-EYDELALAEVIFVITSSIKDACGK

Query:  AP----TERLFLDKYGKICLCLDEIVWTGILENTEKDRI
              T++ FL+ Y  I L +DEIV  GI+   +++ I
Subjt:  AP----TERLFLDKYGKICLCLDEIVWTGILENTEKDRI

Q5NA06 Coatomer subunit zeta-32.5e-0525.95Show/hide
Query:  VLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSSIKDACGKAPTE
        +L+ +S G  +  +++          ++F   + A   K +   E  +    S ++VY  + D+  +V G DE +EL LA V+   + +I          
Subjt:  VLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSSIKDACGKAPTE

Query:  RLFLDKYGKICLCLDEIVWTGILENTEKDRI
        R  L+    I LCLDE+V  GI+  T+   I
Subjt:  RLFLDKYGKICLCLDEIVWTGILENTEKDRI

Arabidopsis top hitse value%identityAlignment
AT1G15370.1 SNARE-like superfamily protein4.4e-6981.51Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSSIKDACGK
        M+LAVL ANSVGN+L+ERF+GVPAEERLHWRSFLVKLGADNLKG KNEEL VA HKSVYIVYT+LGDV++++VGKDEYDELALAE I++IT+++KD CGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSSIKDACGK

Query:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPTE
         PTER+FLDKYG+ICLCLDEIVW G+LENT+KDRIKRLIRLKPP+E
Subjt:  APTERLFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPTE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGCTTGCCGTGCTGATCGCCAACTCCGTCGGCAACATTCTCGTCGAACGGTTTCATGGAGTTCCAGCGGAGGAGCGATTGCATTGGCGATCCTTTTTAGTGAAATT
GGGGGCTGATAATCTCAAAGGTGCTAAAAATGAAGAGCTATATGTTGCTTCACACAAATCTGTATACATAGTTTACACCGTGCTTGGCGATGTTGCAGTTTATGTTGTTG
GGAAGGACGAGTACGATGAATTAGCTTTGGCAGAAGTCATCTTTGTGATAACATCATCGATAAAGGATGCCTGTGGGAAAGCTCCAACTGAGCGTTTGTTTCTTGACAAA
TATGGAAAGATTTGTTTATGTCTCGATGAGATCGTCTGGACGGGCATCTTGGAAAACACGGAAAAAGATAGGATCAAGAGGCTGATAAGGTTGAAGCCTCCCACTGAGTT
T
mRNA sequenceShow/hide mRNA sequence
ATGTTGCTTGCCGTGCTGATCGCCAACTCCGTCGGCAACATTCTCGTCGAACGGTTTCATGGAGTTCCAGCGGAGGAGCGATTGCATTGGCGATCCTTTTTAGTGAAATT
GGGGGCTGATAATCTCAAAGGTGCTAAAAATGAAGAGCTATATGTTGCTTCACACAAATCTGTATACATAGTTTACACCGTGCTTGGCGATGTTGCAGTTTATGTTGTTG
GGAAGGACGAGTACGATGAATTAGCTTTGGCAGAAGTCATCTTTGTGATAACATCATCGATAAAGGATGCCTGTGGGAAAGCTCCAACTGAGCGTTTGTTTCTTGACAAA
TATGGAAAGATTTGTTTATGTCTCGATGAGATCGTCTGGACGGGCATCTTGGAAAACACGGAAAAAGATAGGATCAAGAGGCTGATAAGGTTGAAGCCTCCCACTGAGTT
T
Protein sequenceShow/hide protein sequence
MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELYVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVITSSIKDACGKAPTERLFLDK
YGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPTEF