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MS008524 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS008524
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTPD1 protein homolog 1-like
Genome locationscaffold4:1987112..1987423
RNA-Seq ExpressionMS008524
SyntenyMS008524
Gene Ontology termsGO:0001709 - cell fate determination (biological process)
InterPro domainsIPR040361 - Tapetum determinant 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN60075.1 hypothetical protein Csa_001952 [Cucumis sativus]2.1e-2755.34Show/hide
Query:  GNCQCSLDDIKVRQTATGSKVLGKQEWRVTISNECAACSQMAITVDCNGYKTVKDVNPKILYPQGNVCMVNTGWPVHKSNPISFTYAWDNPFPFKPVSST
        GNC+CS++DI++ Q+ TG +V GKQEWR TI N+C  CSQ ++  DCNG+ TV+ V+  IL   G+VC+VN G P+  S+PISFTYAWDN FPF P+ S 
Subjt:  GNCQCSLDDIKVRQTATGSKVLGKQEWRVTISNECAACSQMAITVDCNGYKTVKDVNPKILYPQGNVCMVNTGWPVHKSNPISFTYAWDNPFPFKPVSST

Query:  TYC
          C
Subjt:  TYC

XP_022137438.1 uncharacterized protein LOC111008881 isoform X1 [Momordica charantia]3.4e-3365.38Show/hide
Query:  GNCQCSLDDIKVRQTATGSKVLGKQEWRVTISNECAACSQMAITVDCNGYKTVKDVNPKILYPQGNVCMVNTGWPVHKSNPISFTYAWDNPFPFKPVSST
        GNCQCS+ +IKV Q+ TGS+VLGK +WRVTISN C  CSQ++I +DC GY+TV++V+P IL    NVC+ N+G P+ KS PISFTYAWDNP+PF P+SST
Subjt:  GNCQCSLDDIKVRQTATGSKVLGKQEWRVTISNECAACSQMAITVDCNGYKTVKDVNPKILYPQGNVCMVNTGWPVHKSNPISFTYAWDNPFPFKPVSST

Query:  TYCG
        TYCG
Subjt:  TYCG

XP_022137447.1 uncharacterized protein LOC111008881 isoform X2 [Momordica charantia]3.4e-3365.38Show/hide
Query:  GNCQCSLDDIKVRQTATGSKVLGKQEWRVTISNECAACSQMAITVDCNGYKTVKDVNPKILYPQGNVCMVNTGWPVHKSNPISFTYAWDNPFPFKPVSST
        GNCQCS+ +IKV Q+ TGS+VLGK +WRVTISN C  CSQ++I +DC GY+TV++V+P IL    NVC+ N+G P+ KS PISFTYAWDNP+PF P+SST
Subjt:  GNCQCSLDDIKVRQTATGSKVLGKQEWRVTISNECAACSQMAITVDCNGYKTVKDVNPKILYPQGNVCMVNTGWPVHKSNPISFTYAWDNPFPFKPVSST

Query:  TYCG
        TYCG
Subjt:  TYCG

XP_022141896.1 uncharacterized protein At1g05835-like [Momordica charantia]8.3e-2453.4Show/hide
Query:  GNCQCSLDDIKVRQTATGSKVLGKQEWRVTISNECAACSQMAITVDCNGYKTVKDVNPKILYPQGNVCMVNTGWPVHKSNPISFTYAWDNPFPFKPVSST
        GNCQCSL DI ++Q AT  +V G+QEW VT+SN C  CSQ  + +DC G+ + + V+   L   GN C++N G P+ KS+PISFTYAWD  FPFKP+SS 
Subjt:  GNCQCSLDDIKVRQTATGSKVLGKQEWRVTISNECAACSQMAITVDCNGYKTVKDVNPKILYPQGNVCMVNTGWPVHKSNPISFTYAWDNPFPFKPVSST

Query:  TYC
          C
Subjt:  TYC

XP_038896903.1 TPD1 protein homolog 1-like [Benincasa hispida]2.6e-2554.37Show/hide
Query:  GNCQCSLDDIKVRQTATGSKVLGKQEWRVTISNECAACSQMAITVDCNGYKTVKDVNPKILYPQGNVCMVNTGWPVHKSNPISFTYAWDNPFPFKPVSST
        G  QCS++DI + Q+ TG +V GKQEWR TI+N C  CSQ ++  DCNG+ +V+ V+  IL   G+ C+VN G P+ KSNPISFTYAWDN F FKP+ S 
Subjt:  GNCQCSLDDIKVRQTATGSKVLGKQEWRVTISNECAACSQMAITVDCNGYKTVKDVNPKILYPQGNVCMVNTGWPVHKSNPISFTYAWDNPFPFKPVSST

Query:  TYC
          C
Subjt:  TYC

TrEMBL top hitse value%identityAlignment
A0A0A0LDN0 Uncharacterized protein1.0e-2755.34Show/hide
Query:  GNCQCSLDDIKVRQTATGSKVLGKQEWRVTISNECAACSQMAITVDCNGYKTVKDVNPKILYPQGNVCMVNTGWPVHKSNPISFTYAWDNPFPFKPVSST
        GNC+CS++DI++ Q+ TG +V GKQEWR TI N+C  CSQ ++  DCNG+ TV+ V+  IL   G+VC+VN G P+  S+PISFTYAWDN FPF P+ S 
Subjt:  GNCQCSLDDIKVRQTATGSKVLGKQEWRVTISNECAACSQMAITVDCNGYKTVKDVNPKILYPQGNVCMVNTGWPVHKSNPISFTYAWDNPFPFKPVSST

Query:  TYC
          C
Subjt:  TYC

A0A0A0LEA1 Uncharacterized protein2.5e-2656.31Show/hide
Query:  GNCQCSLDDIKVRQTATGSKVLGKQEWRVTISNECAACSQMAITVDCNGYKTVKDVNPKILYPQGNVCMVNTGWPVHKSNPISFTYAWDNPFPFKPVSST
        GNC+C L+DI + QT TGS V GKQ W+ TI+N C  C Q ++ +DCNG+ TV+ V+P IL   G+VC+VN G P+ +S PISFTYA DN FPFKP+SS 
Subjt:  GNCQCSLDDIKVRQTATGSKVLGKQEWRVTISNECAACSQMAITVDCNGYKTVKDVNPKILYPQGNVCMVNTGWPVHKSNPISFTYAWDNPFPFKPVSST

Query:  TYC
          C
Subjt:  TYC

A0A6J1C8A1 uncharacterized protein LOC111008881 isoform X21.6e-3365.38Show/hide
Query:  GNCQCSLDDIKVRQTATGSKVLGKQEWRVTISNECAACSQMAITVDCNGYKTVKDVNPKILYPQGNVCMVNTGWPVHKSNPISFTYAWDNPFPFKPVSST
        GNCQCS+ +IKV Q+ TGS+VLGK +WRVTISN C  CSQ++I +DC GY+TV++V+P IL    NVC+ N+G P+ KS PISFTYAWDNP+PF P+SST
Subjt:  GNCQCSLDDIKVRQTATGSKVLGKQEWRVTISNECAACSQMAITVDCNGYKTVKDVNPKILYPQGNVCMVNTGWPVHKSNPISFTYAWDNPFPFKPVSST

Query:  TYCG
        TYCG
Subjt:  TYCG

A0A6J1CAC8 uncharacterized protein LOC111008881 isoform X11.6e-3365.38Show/hide
Query:  GNCQCSLDDIKVRQTATGSKVLGKQEWRVTISNECAACSQMAITVDCNGYKTVKDVNPKILYPQGNVCMVNTGWPVHKSNPISFTYAWDNPFPFKPVSST
        GNCQCS+ +IKV Q+ TGS+VLGK +WRVTISN C  CSQ++I +DC GY+TV++V+P IL    NVC+ N+G P+ KS PISFTYAWDNP+PF P+SST
Subjt:  GNCQCSLDDIKVRQTATGSKVLGKQEWRVTISNECAACSQMAITVDCNGYKTVKDVNPKILYPQGNVCMVNTGWPVHKSNPISFTYAWDNPFPFKPVSST

Query:  TYCG
        TYCG
Subjt:  TYCG

A0A6J1CKK7 uncharacterized protein At1g05835-like4.0e-2453.4Show/hide
Query:  GNCQCSLDDIKVRQTATGSKVLGKQEWRVTISNECAACSQMAITVDCNGYKTVKDVNPKILYPQGNVCMVNTGWPVHKSNPISFTYAWDNPFPFKPVSST
        GNCQCSL DI ++Q AT  +V G+QEW VT+SN C  CSQ  + +DC G+ + + V+   L   GN C++N G P+ KS+PISFTYAWD  FPFKP+SS 
Subjt:  GNCQCSLDDIKVRQTATGSKVLGKQEWRVTISNECAACSQMAITVDCNGYKTVKDVNPKILYPQGNVCMVNTGWPVHKSNPISFTYAWDNPFPFKPVSST

Query:  TYC
          C
Subjt:  TYC

SwissProt top hitse value%identityAlignment
A8MS78 Uncharacterized protein At1g058352.6e-0426.21Show/hide
Query:  CQCSLDDIKVRQTATGSKVLGKQEWRVTISNECAACSQMAITVDCNGY--KTVKDVNPKILYPQGNVCMVNTGWPVHKSNPISFTYAWDNPFPFKPVSST
        C+    +  VRQT    K    +++RV + N+C  C  + + + C G+    V     ++L      C+VN G P+     +SF Y+  + F  +P+S +
Subjt:  CQCSLDDIKVRQTATGSKVLGKQEWRVTISNECAACSQMAITVDCNGY--KTVKDVNPKILYPQGNVCMVNTGWPVHKSNPISFTYAWDNPFPFKPVSST

Query:  TYC
          C
Subjt:  TYC

Q1G3T1 TPD1 protein homolog 18.1e-0631Show/hide
Query:  CSLDDIKVRQTATGSKVLGKQEWRVTISNECAA-CSQMAITVDCNGYKTVKDVNPKILYP-QGNVCMVNTGWPVHKSNPISFTYAWDNPFPFKPVSSTTY
        CS DDI + Q +T     G   + V I N C + C+   I V C  + +V+ VNP++      + C+VN G P+     +SF YA    +P    S + +
Subjt:  CSLDDIKVRQTATGSKVLGKQEWRVTISNECAA-CSQMAITVDCNGYKTVKDVNPKILYP-QGNVCMVNTGWPVHKSNPISFTYAWDNPFPFKPVSSTTY

Arabidopsis top hitse value%identityAlignment
AT1G05835.1 PHD finger protein1.9e-0526.21Show/hide
Query:  CQCSLDDIKVRQTATGSKVLGKQEWRVTISNECAACSQMAITVDCNGY--KTVKDVNPKILYPQGNVCMVNTGWPVHKSNPISFTYAWDNPFPFKPVSST
        C+    +  VRQT    K    +++RV + N+C  C  + + + C G+    V     ++L      C+VN G P+     +SF Y+  + F  +P+S +
Subjt:  CQCSLDDIKVRQTATGSKVLGKQEWRVTISNECAACSQMAITVDCNGY--KTVKDVNPKILYPQGNVCMVNTGWPVHKSNPISFTYAWDNPFPFKPVSST

Query:  TYC
          C
Subjt:  TYC

AT1G32583.1 FUNCTIONS IN: molecular_function unknown5.8e-0731Show/hide
Query:  CSLDDIKVRQTATGSKVLGKQEWRVTISNECAA-CSQMAITVDCNGYKTVKDVNPKILYP-QGNVCMVNTGWPVHKSNPISFTYAWDNPFPFKPVSSTTY
        CS DDI + Q +T     G   + V I N C + C+   I V C  + +V+ VNP++      + C+VN G P+     +SF YA    +P    S + +
Subjt:  CSLDDIKVRQTATGSKVLGKQEWRVTISNECAA-CSQMAITVDCNGYKTVKDVNPKILYP-QGNVCMVNTGWPVHKSNPISFTYAWDNPFPFKPVSSTTY

AT4G32090.1 Beta-1,3-N-Acetylglucosaminyltransferase family protein7.5e-1537.37Show/hide
Query:  GNCQCSLDDIKVRQTATGSKVLGKQEWRVTISNECAACSQMAITVDCNGYKTVKDVNPKILYPQGNVCMVNTGWPVHKSNPISFTYAWDNPFPFKPVSS
        G C C+   I++    TG ++ G+ EW+VT+ N C  C Q  +T+ C G+   K V P +L PQGN C++  G  +       FTYA   P+ F+PV S
Subjt:  GNCQCSLDDIKVRQTATGSKVLGKQEWRVTISNECAACSQMAITVDCNGYKTVKDVNPKILYPQGNVCMVNTGWPVHKSNPISFTYAWDNPFPFKPVSS

AT4G32105.1 Beta-1,3-N-Acetylglucosaminyltransferase family protein2.0e-1230.1Show/hide
Query:  GNCQCSLDDIKVRQTATGSKVLGKQEWRVTISNECAACSQMAITVDCNGYKTVKDVNPKILYPQGNVCMVNTGWPVHKSNPISFTYAWDNPFPFKPVSST
        G   C L+ + V+Q+ TG  V  K EW V ++N C  C      + C G+++V  V   +L   G++C++N G  +       F Y WD  F  K +   
Subjt:  GNCQCSLDDIKVRQTATGSKVLGKQEWRVTISNECAACSQMAITVDCNGYKTVKDVNPKILYPQGNVCMVNTGWPVHKSNPISFTYAWDNPFPFKPVSST

Query:  TYC
          C
Subjt:  TYC

AT4G32110.1 Beta-1,3-N-Acetylglucosaminyltransferase family protein2.4e-1332.04Show/hide
Query:  GNCQCSLDDIKVRQTATGSKVLGKQEWRVTISNECAACSQMAITVDCNGYKTVKDVNPKILYPQGNVCMVNTGWPVHKSNPISFTYAWDNPFPFKPVSST
        G   CSL+ + V+Q+ TG  V  K EW V ++N C  C      + C G+ +V  ++  +L   G+ C+VN G  +     I F Y WD  F  K +   
Subjt:  GNCQCSLDDIKVRQTATGSKVLGKQEWRVTISNECAACSQMAITVDCNGYKTVKDVNPKILYPQGNVCMVNTGWPVHKSNPISFTYAWDNPFPFKPVSST

Query:  TYC
          C
Subjt:  TYC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGTAATTGCCAATGCTCTTTGGATGACATTAAAGTCAGGCAAACTGCCACTGGATCCAAAGTGCTGGGAAAACAAGAATGGAGAGTTACAATCTCAAACGAATGTGCTGC
TTGTTCCCAGATGGCTATAACGGTGGATTGCAATGGATATAAGACAGTAAAGGATGTTAATCCAAAAATCTTATACCCTCAAGGGAATGTGTGTATGGTGAATACTGGTT
GGCCAGTCCACAAATCAAATCCCATTTCCTTCACTTATGCTTGGGATAATCCCTTCCCTTTTAAGCCCGTTTCCTCCACAACTTACTGTGGT
mRNA sequenceShow/hide mRNA sequence
GGTAATTGCCAATGCTCTTTGGATGACATTAAAGTCAGGCAAACTGCCACTGGATCCAAAGTGCTGGGAAAACAAGAATGGAGAGTTACAATCTCAAACGAATGTGCTGC
TTGTTCCCAGATGGCTATAACGGTGGATTGCAATGGATATAAGACAGTAAAGGATGTTAATCCAAAAATCTTATACCCTCAAGGGAATGTGTGTATGGTGAATACTGGTT
GGCCAGTCCACAAATCAAATCCCATTTCCTTCACTTATGCTTGGGATAATCCCTTCCCTTTTAAGCCCGTTTCCTCCACAACTTACTGTGGT
Protein sequenceShow/hide protein sequence
GNCQCSLDDIKVRQTATGSKVLGKQEWRVTISNECAACSQMAITVDCNGYKTVKDVNPKILYPQGNVCMVNTGWPVHKSNPISFTYAWDNPFPFKPVSSTTYCG