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MS008526 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS008526
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTPD1 protein homolog 1-like
Genome locationscaffold4:1992332..1992706
RNA-Seq ExpressionMS008526
SyntenyMS008526
Gene Ontology termsGO:0001709 - cell fate determination (biological process)
GO:0016740 - transferase activity (molecular function)
InterPro domainsIPR040361 - Tapetum determinant 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN60075.1 hypothetical protein Csa_001952 [Cucumis sativus]5.6e-4381.37Show/hide
Query:  GNCQCSLDDITIRQNTTGSEVEGKQEWRATITNNCVCSQYSVKFDCNGFNTVEDVDSSILMVFGSVCLVNNGEPIFKPKPISFTYAWDNAFPFKPLFSQV
        GNC+CS++DI I Q+TTG EV GKQEWRATI N CVCSQYSVKFDCNGFNTVE VD SILMV GSVCLVNNG+PIF   PISFTYAWDNAFPF PLFSQV
Subjt:  GNCQCSLDDITIRQNTTGSEVEGKQEWRATITNNCVCSQYSVKFDCNGFNTVEDVDSSILMVFGSVCLVNNGEPIFKPKPISFTYAWDNAFPFKPLFSQV

Query:  SC
        +C
Subjt:  SC

XP_022137447.1 uncharacterized protein LOC111008881 isoform X2 [Momordica charantia]1.5e-2755.77Show/hide
Query:  FAGNCQCSLDDITIRQNTTGSEVEGKQEWRATITNNCVCSQYSVKFDCNGFNTVEDVDSSILMVFGSVCLVNNGEPIFKPKPISFTYAWDNAFPFKPLFS
        + GNCQCS+ +I + Q+ TGS+V GK +WR TI+NNC CSQ S+  DC G+ TVE+VD +IL    +VCL N+G P+ K  PISFTYAWDN +PF PL S
Subjt:  FAGNCQCSLDDITIRQNTTGSEVEGKQEWRATITNNCVCSQYSVKFDCNGFNTVEDVDSSILMVFGSVCLVNNGEPIFKPKPISFTYAWDNAFPFKPLFS

Query:  QVSC
           C
Subjt:  QVSC

XP_022141896.1 uncharacterized protein At1g05835-like [Momordica charantia]1.7e-3164.71Show/hide
Query:  GNCQCSLDDITIRQNTTGSEVEGKQEWRATITNNCVCSQYSVKFDCNGFNTVEDVDSSILMVFGSVCLVNNGEPIFKPKPISFTYAWDNAFPFKPLFSQV
        GNCQCSL DI+I+Q  T   V G+QEW  T++NNCVCSQY+VK DC GF++ E VDSS L   G+ CL+N G PIFK  PISFTYAWD  FPFKPL SQV
Subjt:  GNCQCSLDDITIRQNTTGSEVEGKQEWRATITNNCVCSQYSVKFDCNGFNTVEDVDSSILMVFGSVCLVNNGEPIFKPKPISFTYAWDNAFPFKPLFSQV

Query:  SC
        +C
Subjt:  SC

XP_038881121.1 uncharacterized protein At1g05835-like [Benincasa hispida]1.0e-2853.66Show/hide
Query:  LRFVTRLVVLYFESFVLDNFAGNCQCSLDDITIRQNTTGSEVEGKQEWRATITNNCVCSQYSVKFDCNGFNTVEDVDSSILMVFGSVCLVNNGEPIFKPK
        ++ VT L+VL   S       GNCQC L++ITI Q  TG ++ G  EW+ TI+NNC CSQ  VK DC GF T E +D SIL VF + CLVNNG PIF   
Subjt:  LRFVTRLVVLYFESFVLDNFAGNCQCSLDDITIRQNTTGSEVEGKQEWRATITNNCVCSQYSVKFDCNGFNTVEDVDSSILMVFGSVCLVNNGEPIFKPK

Query:  PISFTYAWDNAFPFKPLFSQVSC
        PI+F+YA D  F FKP+ SQ+SC
Subjt:  PISFTYAWDNAFPFKPLFSQVSC

XP_038896903.1 TPD1 protein homolog 1-like [Benincasa hispida]2.8e-4270.97Show/hide
Query:  MLRFVTRLVVLYFESFVLDNFAGNCQCSLDDITIRQNTTGSEVEGKQEWRATITNNCVCSQYSVKFDCNGFNTVEDVDSSILMVFGSVCLVNNGEPIFKP
        M+  +  L VL+F   +     G  QCS++DITI Q+TTG EV GKQEWRATITNNCVCSQYSVKFDCNGFN+VE VD SILMV GS CLVNNG+P+FK 
Subjt:  MLRFVTRLVVLYFESFVLDNFAGNCQCSLDDITIRQNTTGSEVEGKQEWRATITNNCVCSQYSVKFDCNGFNTVEDVDSSILMVFGSVCLVNNGEPIFKP

Query:  KPISFTYAWDNAFPFKPLFSQVSC
         PISFTYAWDNAF FKPLFSQV+C
Subjt:  KPISFTYAWDNAFPFKPLFSQVSC

TrEMBL top hitse value%identityAlignment
A0A0A0LDN0 Uncharacterized protein2.7e-4381.37Show/hide
Query:  GNCQCSLDDITIRQNTTGSEVEGKQEWRATITNNCVCSQYSVKFDCNGFNTVEDVDSSILMVFGSVCLVNNGEPIFKPKPISFTYAWDNAFPFKPLFSQV
        GNC+CS++DI I Q+TTG EV GKQEWRATI N CVCSQYSVKFDCNGFNTVE VD SILMV GSVCLVNNG+PIF   PISFTYAWDNAFPF PLFSQV
Subjt:  GNCQCSLDDITIRQNTTGSEVEGKQEWRATITNNCVCSQYSVKFDCNGFNTVEDVDSSILMVFGSVCLVNNGEPIFKPKPISFTYAWDNAFPFKPLFSQV

Query:  SC
        +C
Subjt:  SC

A0A0A0LEA1 Uncharacterized protein1.4e-3672.55Show/hide
Query:  GNCQCSLDDITIRQNTTGSEVEGKQEWRATITNNCVCSQYSVKFDCNGFNTVEDVDSSILMVFGSVCLVNNGEPIFKPKPISFTYAWDNAFPFKPLFSQV
        GNC+C L+DI I Q TTGS V+GKQ W+ATITNNC+C Q S+K DCNGFNTV+ VD SIL V GSVCLVN G+PIF+  PISFTYA DNAFPFKPL SQ+
Subjt:  GNCQCSLDDITIRQNTTGSEVEGKQEWRATITNNCVCSQYSVKFDCNGFNTVEDVDSSILMVFGSVCLVNNGEPIFKPKPISFTYAWDNAFPFKPLFSQV

Query:  SC
        SC
Subjt:  SC

A0A6J1C8A1 uncharacterized protein LOC111008881 isoform X27.2e-2855.77Show/hide
Query:  FAGNCQCSLDDITIRQNTTGSEVEGKQEWRATITNNCVCSQYSVKFDCNGFNTVEDVDSSILMVFGSVCLVNNGEPIFKPKPISFTYAWDNAFPFKPLFS
        + GNCQCS+ +I + Q+ TGS+V GK +WR TI+NNC CSQ S+  DC G+ TVE+VD +IL    +VCL N+G P+ K  PISFTYAWDN +PF PL S
Subjt:  FAGNCQCSLDDITIRQNTTGSEVEGKQEWRATITNNCVCSQYSVKFDCNGFNTVEDVDSSILMVFGSVCLVNNGEPIFKPKPISFTYAWDNAFPFKPLFS

Query:  QVSC
           C
Subjt:  QVSC

A0A6J1CAC8 uncharacterized protein LOC111008881 isoform X17.2e-2855.77Show/hide
Query:  FAGNCQCSLDDITIRQNTTGSEVEGKQEWRATITNNCVCSQYSVKFDCNGFNTVEDVDSSILMVFGSVCLVNNGEPIFKPKPISFTYAWDNAFPFKPLFS
        + GNCQCS+ +I + Q+ TGS+V GK +WR TI+NNC CSQ S+  DC G+ TVE+VD +IL    +VCL N+G P+ K  PISFTYAWDN +PF PL S
Subjt:  FAGNCQCSLDDITIRQNTTGSEVEGKQEWRATITNNCVCSQYSVKFDCNGFNTVEDVDSSILMVFGSVCLVNNGEPIFKPKPISFTYAWDNAFPFKPLFS

Query:  QVSC
           C
Subjt:  QVSC

A0A6J1CKK7 uncharacterized protein At1g05835-like8.2e-3264.71Show/hide
Query:  GNCQCSLDDITIRQNTTGSEVEGKQEWRATITNNCVCSQYSVKFDCNGFNTVEDVDSSILMVFGSVCLVNNGEPIFKPKPISFTYAWDNAFPFKPLFSQV
        GNCQCSL DI+I+Q  T   V G+QEW  T++NNCVCSQY+VK DC GF++ E VDSS L   G+ CL+N G PIFK  PISFTYAWD  FPFKPL SQV
Subjt:  GNCQCSLDDITIRQNTTGSEVEGKQEWRATITNNCVCSQYSVKFDCNGFNTVEDVDSSILMVFGSVCLVNNGEPIFKPKPISFTYAWDNAFPFKPLFSQV

Query:  SC
        +C
Subjt:  SC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G32090.1 Beta-1,3-N-Acetylglucosaminyltransferase family protein7.9e-1134Show/hide
Query:  GNCQCSLDDITIRQNTTGSEVEGKQEWRATITNNCVCSQYSVKFDCNGFNTVEDVDSSILMVFGSVCLVNNGEPIFKPKPISFTYAWDNAFPFKPLFSQV
        G C C+   I I    TG E+ G+ EW+ T+ N C C Q  V   C GF   + V   +L   G+ CL+  G  +       FTYA    + F+P+ S+V
Subjt:  GNCQCSLDDITIRQNTTGSEVEGKQEWRATITNNCVCSQYSVKFDCNGFNTVEDVDSSILMVFGSVCLVNNGEPIFKPKPISFTYAWDNAFPFKPLFSQV

AT4G32105.1 Beta-1,3-N-Acetylglucosaminyltransferase family protein1.2e-1433.61Show/hide
Query:  LVVLYFESFVLDNFAGNCQCSLDDITIRQNTTGSEVEGKQEWRATITNNC-VCSQYSVKFDCNGFNTVEDVDSSILMVFGSVCLVNNGEPIFKPKPISFT
        L ++ F +FV   +     C L+ ++++Q+ TG  V+ K EW   +TN C  C     K  C GF +V  V +S+L   G +CL+N G  IF      F 
Subjt:  LVVLYFESFVLDNFAGNCQCSLDDITIRQNTTGSEVEGKQEWRATITNNC-VCSQYSVKFDCNGFNTVEDVDSSILMVFGSVCLVNNGEPIFKPKPISFT

Query:  YAWDNAFPFKPLFSQVSCP
        Y WD +F  K +   + CP
Subjt:  YAWDNAFPFKPLFSQVSCP

AT4G32110.1 Beta-1,3-N-Acetylglucosaminyltransferase family protein1.8e-1534.75Show/hide
Query:  LVVLYFESFVLDNFAGNCQCSLDDITIRQNTTGSEVEGKQEWRATITNNC-VCSQYSVKFDCNGFNTVEDVDSSILMVFGSVCLVNNGEPIFKPKPISFT
        L ++ F +FV   +     CSL+ ++++Q+ TG  V+ K EW   +TN C  C   + +  C GFN+V  +D+S+L+  G  CLVN G+ I     I F 
Subjt:  LVVLYFESFVLDNFAGNCQCSLDDITIRQNTTGSEVEGKQEWRATITNNC-VCSQYSVKFDCNGFNTVEDVDSSILMVFGSVCLVNNGEPIFKPKPISFT

Query:  YAWDNAFPFKPLFSQVSC
        Y WD +F  K +   + C
Subjt:  YAWDNAFPFKPLFSQVSC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTACGTTTCGTAACCCGTCTTGTTGTACTGTATTTTGAAAGTTTTGTTTTGGATAATTTTGCAGGCAATTGCCAATGCTCATTGGATGACATTACAATCAGGCAAAA
CACAACTGGAAGTGAAGTTGAAGGGAAGCAAGAATGGAGAGCCACAATCACAAACAATTGTGTTTGTTCTCAATACAGTGTGAAGTTTGATTGCAATGGATTTAATACAG
TGGAGGATGTTGATTCCTCCATTTTAATGGTTTTTGGGTCTGTTTGTTTGGTTAATAATGGTGAACCAATCTTCAAACCAAAACCCATCTCCTTCACTTATGCTTGGGAC
AATGCCTTCCCTTTCAAGCCCCTCTTCTCTCAAGTTTCTTGTCCT
mRNA sequenceShow/hide mRNA sequence
ATGTTACGTTTCGTAACCCGTCTTGTTGTACTGTATTTTGAAAGTTTTGTTTTGGATAATTTTGCAGGCAATTGCCAATGCTCATTGGATGACATTACAATCAGGCAAAA
CACAACTGGAAGTGAAGTTGAAGGGAAGCAAGAATGGAGAGCCACAATCACAAACAATTGTGTTTGTTCTCAATACAGTGTGAAGTTTGATTGCAATGGATTTAATACAG
TGGAGGATGTTGATTCCTCCATTTTAATGGTTTTTGGGTCTGTTTGTTTGGTTAATAATGGTGAACCAATCTTCAAACCAAAACCCATCTCCTTCACTTATGCTTGGGAC
AATGCCTTCCCTTTCAAGCCCCTCTTCTCTCAAGTTTCTTGTCCT
Protein sequenceShow/hide protein sequence
MLRFVTRLVVLYFESFVLDNFAGNCQCSLDDITIRQNTTGSEVEGKQEWRATITNNCVCSQYSVKFDCNGFNTVEDVDSSILMVFGSVCLVNNGEPIFKPKPISFTYAWD
NAFPFKPLFSQVSCP