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MS008527 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS008527
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTPD1 protein homolog 1-like
Genome locationscaffold4:1996365..1996673
RNA-Seq ExpressionMS008527
SyntenyMS008527
Gene Ontology termsGO:0001709 - cell fate determination (biological process)
InterPro domainsIPR040361 - Tapetum determinant 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN60075.1 hypothetical protein Csa_001952 [Cucumis sativus]2.4e-3162.14Show/hide
Query:  GNCQCSLGDISIKQEATEKRVGGQQEWLVTVSNNCVCSQYNVKLDCTGFSSEEIVDSSKLTNTGNECLINGGQPIFKSDPISFTYAWDLIFPFKPLSSQV
        GNC+CS+ DI I Q  T + V G+QEW  T+ N CVCSQY+VK DC GF++ E VD S L   G+ CL+N GQPIF S PISFTYAWD  FPF PL SQV
Subjt:  GNCQCSLGDISIKQEATEKRVGGQQEWLVTVSNNCVCSQYNVKLDCTGFSSEEIVDSSKLTNTGNECLINGGQPIFKSDPISFTYAWDLIFPFKPLSSQV

Query:  ACS
        ACS
Subjt:  ACS

XP_016675584.1 uncharacterized protein At1g05835-like [Gossypium hirsutum]3.6e-2756.31Show/hide
Query:  GNCQCSLGDISIKQEATEKRVGGQQEWLVTVSNNCVCSQYNVKLDCTGFSSEEIVDSSKLTNTGNECLINGGQPIFKSDPISFTYAWDLIFPFKPLSSQV
        G CQC+L D+ I Q  T K V  + EW  TV N+C+C+Q ++KL C GF + E VDSS +  TG ECLINGGQP+  S  +SF YAWD  FPFKPLSSQ+
Subjt:  GNCQCSLGDISIKQEATEKRVGGQQEWLVTVSNNCVCSQYNVKLDCTGFSSEEIVDSSKLTNTGNECLINGGQPIFKSDPISFTYAWDLIFPFKPLSSQV

Query:  ACS
         CS
Subjt:  ACS

XP_017617499.1 PREDICTED: uncharacterized protein At1g05835-like [Gossypium arboreum]3.6e-2756.31Show/hide
Query:  GNCQCSLGDISIKQEATEKRVGGQQEWLVTVSNNCVCSQYNVKLDCTGFSSEEIVDSSKLTNTGNECLINGGQPIFKSDPISFTYAWDLIFPFKPLSSQV
        G CQC+L D+ I Q  T K V  + EW  TV N+C+C+Q ++KL C GF + E VDSS +  TG ECLINGGQP+  S  +SF YAWD  FPFKPLSSQ+
Subjt:  GNCQCSLGDISIKQEATEKRVGGQQEWLVTVSNNCVCSQYNVKLDCTGFSSEEIVDSSKLTNTGNECLINGGQPIFKSDPISFTYAWDLIFPFKPLSSQV

Query:  ACS
         CS
Subjt:  ACS

XP_022141896.1 uncharacterized protein At1g05835-like [Momordica charantia]1.7e-5399.03Show/hide
Query:  GNCQCSLGDISIKQEATEKRVGGQQEWLVTVSNNCVCSQYNVKLDCTGFSSEEIVDSSKLTNTGNECLINGGQPIFKSDPISFTYAWDLIFPFKPLSSQV
        GNCQCSLGDISIKQEATEKRVGGQQEWLVTVSNNCVCSQYNVKLDCTGFSSEEIVDSSKLTNTGNECLINGG+PIFKSDPISFTYAWDLIFPFKPLSSQV
Subjt:  GNCQCSLGDISIKQEATEKRVGGQQEWLVTVSNNCVCSQYNVKLDCTGFSSEEIVDSSKLTNTGNECLINGGQPIFKSDPISFTYAWDLIFPFKPLSSQV

Query:  ACS
        ACS
Subjt:  ACS

XP_038896903.1 TPD1 protein homolog 1-like [Benincasa hispida]2.2e-3265.05Show/hide
Query:  GNCQCSLGDISIKQEATEKRVGGQQEWLVTVSNNCVCSQYNVKLDCTGFSSEEIVDSSKLTNTGNECLINGGQPIFKSDPISFTYAWDLIFPFKPLSSQV
        G  QCS+ DI+I Q  T K V G+QEW  T++NNCVCSQY+VK DC GF+S E VD S L   G+ECL+N GQP+FKS+PISFTYAWD  F FKPL SQV
Subjt:  GNCQCSLGDISIKQEATEKRVGGQQEWLVTVSNNCVCSQYNVKLDCTGFSSEEIVDSSKLTNTGNECLINGGQPIFKSDPISFTYAWDLIFPFKPLSSQV

Query:  ACS
        ACS
Subjt:  ACS

TrEMBL top hitse value%identityAlignment
A0A0A0LDN0 Uncharacterized protein1.2e-3162.14Show/hide
Query:  GNCQCSLGDISIKQEATEKRVGGQQEWLVTVSNNCVCSQYNVKLDCTGFSSEEIVDSSKLTNTGNECLINGGQPIFKSDPISFTYAWDLIFPFKPLSSQV
        GNC+CS+ DI I Q  T + V G+QEW  T+ N CVCSQY+VK DC GF++ E VD S L   G+ CL+N GQPIF S PISFTYAWD  FPF PL SQV
Subjt:  GNCQCSLGDISIKQEATEKRVGGQQEWLVTVSNNCVCSQYNVKLDCTGFSSEEIVDSSKLTNTGNECLINGGQPIFKSDPISFTYAWDLIFPFKPLSSQV

Query:  ACS
        ACS
Subjt:  ACS

A0A0A0LEA1 Uncharacterized protein7.0e-2958.25Show/hide
Query:  GNCQCSLGDISIKQEATEKRVGGQQEWLVTVSNNCVCSQYNVKLDCTGFSSEEIVDSSKLTNTGNECLINGGQPIFKSDPISFTYAWDLIFPFKPLSSQV
        GNC+C L DI+I Q  T   V G+Q W  T++NNC+C Q ++KLDC GF++ + VD S L  +G+ CL+NGGQPIF+S PISFTYA D  FPFKPLSSQ+
Subjt:  GNCQCSLGDISIKQEATEKRVGGQQEWLVTVSNNCVCSQYNVKLDCTGFSSEEIVDSSKLTNTGNECLINGGQPIFKSDPISFTYAWDLIFPFKPLSSQV

Query:  ACS
        +CS
Subjt:  ACS

A0A0B0NVJ4 uncharacterized protein At1g05835-like1.7e-2756.31Show/hide
Query:  GNCQCSLGDISIKQEATEKRVGGQQEWLVTVSNNCVCSQYNVKLDCTGFSSEEIVDSSKLTNTGNECLINGGQPIFKSDPISFTYAWDLIFPFKPLSSQV
        G CQC+L D+ I Q  T K V  + EW  TV N+C+C+Q ++KL C GF + E VDSS +  TG ECLINGGQP+  S  +SF YAWD  FPFKPLSSQ+
Subjt:  GNCQCSLGDISIKQEATEKRVGGQQEWLVTVSNNCVCSQYNVKLDCTGFSSEEIVDSSKLTNTGNECLINGGQPIFKSDPISFTYAWDLIFPFKPLSSQV

Query:  ACS
         CS
Subjt:  ACS

A0A2P5Y751 Uncharacterized protein1.7e-2756.31Show/hide
Query:  GNCQCSLGDISIKQEATEKRVGGQQEWLVTVSNNCVCSQYNVKLDCTGFSSEEIVDSSKLTNTGNECLINGGQPIFKSDPISFTYAWDLIFPFKPLSSQV
        G CQC+L D+ I Q  T K V  + EW  TV N+C+C+Q ++KL C GF + E VDSS +  TG ECLINGGQP+  S  +SF YAWD  FPFKPLSSQ+
Subjt:  GNCQCSLGDISIKQEATEKRVGGQQEWLVTVSNNCVCSQYNVKLDCTGFSSEEIVDSSKLTNTGNECLINGGQPIFKSDPISFTYAWDLIFPFKPLSSQV

Query:  ACS
         CS
Subjt:  ACS

A0A6J1CKK7 uncharacterized protein At1g05835-like8.2e-5499.03Show/hide
Query:  GNCQCSLGDISIKQEATEKRVGGQQEWLVTVSNNCVCSQYNVKLDCTGFSSEEIVDSSKLTNTGNECLINGGQPIFKSDPISFTYAWDLIFPFKPLSSQV
        GNCQCSLGDISIKQEATEKRVGGQQEWLVTVSNNCVCSQYNVKLDCTGFSSEEIVDSSKLTNTGNECLINGG+PIFKSDPISFTYAWDLIFPFKPLSSQV
Subjt:  GNCQCSLGDISIKQEATEKRVGGQQEWLVTVSNNCVCSQYNVKLDCTGFSSEEIVDSSKLTNTGNECLINGGQPIFKSDPISFTYAWDLIFPFKPLSSQV

Query:  ACS
        ACS
Subjt:  ACS

SwissProt top hitse value%identityAlignment
A8MS78 Uncharacterized protein At1g058355.2e-0527.88Show/hide
Query:  CQCSLGDISIKQEATEKRVGGQQEWLVTVSNNC-VCSQYNVKLDCTGFSSEEIVDSS---KLTNTGNECLINGGQPIFKSDPISFTYAWDLIFPFKPLSS
        C+    + +++Q   + R G  +++ V V N C +C   N++L C GF  + +VD +    L+++   C++N G P+     +SF Y+    F  +PLS 
Subjt:  CQCSLGDISIKQEATEKRVGGQQEWLVTVSNNC-VCSQYNVKLDCTGFSSEEIVDSS---KLTNTGNECLINGGQPIFKSDPISFTYAWDLIFPFKPLSS

Query:  QVAC
           C
Subjt:  QVAC

Q1G3T1 TPD1 protein homolog 18.0e-0630.69Show/hide
Query:  CSLGDISIKQEATEKRVGGQQEWLVTVSNNCV--CSQYNVKLDCTGFSSEEIVDSSKLTNTG-NECLINGGQPIFKSDPISFTYAWDLIFPFKPLSSQVA
        CS  DI + Q +T     G   + V + N+CV  C+   + + C  FSS  +V+         ++CL+N GQP+     +SF YA    +P    S  V+
Subjt:  CSLGDISIKQEATEKRVGGQQEWLVTVSNNCV--CSQYNVKLDCTGFSSEEIVDSSKLTNTG-NECLINGGQPIFKSDPISFTYAWDLIFPFKPLSSQVA

Query:  C
        C
Subjt:  C

Arabidopsis top hitse value%identityAlignment
AT1G32583.1 FUNCTIONS IN: molecular_function unknown5.7e-0730.69Show/hide
Query:  CSLGDISIKQEATEKRVGGQQEWLVTVSNNCV--CSQYNVKLDCTGFSSEEIVDSSKLTNTG-NECLINGGQPIFKSDPISFTYAWDLIFPFKPLSSQVA
        CS  DI + Q +T     G   + V + N+CV  C+   + + C  FSS  +V+         ++CL+N GQP+     +SF YA    +P    S  V+
Subjt:  CSLGDISIKQEATEKRVGGQQEWLVTVSNNCV--CSQYNVKLDCTGFSSEEIVDSSKLTNTG-NECLINGGQPIFKSDPISFTYAWDLIFPFKPLSSQVA

Query:  C
        C
Subjt:  C

AT4G32090.1 Beta-1,3-N-Acetylglucosaminyltransferase family protein5.3e-1339Show/hide
Query:  GNCQCSLGDISIKQEATEKRVGGQQEWLVTVSNNCVCSQYNVKLDCTGFSSEEIVDSSKLTNTGNECLINGGQPIFKSDPISFTYAWDLIFPFKPLSSQV
        G C C+ G I I    T + +GGQ EW VTV N C C Q +V L C GF+  + V    L   GN CL+  G  +       FTYA    + F+P+ S+V
Subjt:  GNCQCSLGDISIKQEATEKRVGGQQEWLVTVSNNCVCSQYNVKLDCTGFSSEEIVDSSKLTNTGNECLINGGQPIFKSDPISFTYAWDLIFPFKPLSSQV

AT4G32100.1 Beta-1,3-N-Acetylglucosaminyltransferase family protein1.7e-1134.95Show/hide
Query:  GNCQCSLGDISIKQEATEKRVGGQQEWLVTVSNNCVCSQYNVKLDCTGFSSEEIVDSSKLTNTGNECLINGGQPIFKSDPISFTYAWDLIFPFKPLSSQV
        G+   SL  +S+ Q  T   V  + EW V V N+  C   +  L C  F S   +DS  L+ +G+ CL+  G  I     ISF Y WD  F  K +   +
Subjt:  GNCQCSLGDISIKQEATEKRVGGQQEWLVTVSNNCVCSQYNVKLDCTGFSSEEIVDSSKLTNTGNECLINGGQPIFKSDPISFTYAWDLIFPFKPLSSQV

Query:  ACS
        ACS
Subjt:  ACS

AT4G32105.1 Beta-1,3-N-Acetylglucosaminyltransferase family protein1.1e-1337.86Show/hide
Query:  GNCQCSLGDISIKQEATEKRVGGQQEWLVTVSNNC-VCSQYNVKLDCTGFSSEEIVDSSKLTNTGNECLINGGQPIFKSDPISFTYAWDLIFPFKPLSSQ
        G   C L  +S+KQ  T K V  + EW V V+N C  C     KL C GF S   V +S L+ +G+ CL+N G  IF      F Y WD  F  K +   
Subjt:  GNCQCSLGDISIKQEATEKRVGGQQEWLVTVSNNC-VCSQYNVKLDCTGFSSEEIVDSSKLTNTGNECLINGGQPIFKSDPISFTYAWDLIFPFKPLSSQ

Query:  VAC
        + C
Subjt:  VAC

AT4G32110.1 Beta-1,3-N-Acetylglucosaminyltransferase family protein4.4e-1538.83Show/hide
Query:  GNCQCSLGDISIKQEATEKRVGGQQEWLVTVSNNC-VCSQYNVKLDCTGFSSEEIVDSSKLTNTGNECLINGGQPIFKSDPISFTYAWDLIFPFKPLSSQ
        G   CSL  +S+KQ  T K V  + EW V V+N C  C   N +L C GF+S   +D+S L  +G+ CL+N G+ I     I F Y WD  F  K +   
Subjt:  GNCQCSLGDISIKQEATEKRVGGQQEWLVTVSNNC-VCSQYNVKLDCTGFSSEEIVDSSKLTNTGNECLINGGQPIFKSDPISFTYAWDLIFPFKPLSSQ

Query:  VAC
        + C
Subjt:  VAC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGCAACTGCCAATGCTCGTTGGGTGACATTTCAATCAAGCAAGAAGCAACTGAAAAAAGAGTTGGAGGGCAGCAAGAATGGTTAGTGACAGTCTCAAACAACTGTGTTTG
TTCTCAGTACAATGTGAAGTTGGATTGCACTGGATTTTCCTCAGAGGAGATTGTTGATTCATCAAAGTTAACAAATACTGGGAATGAGTGTTTGATCAACGGTGGTCAGC
CAATCTTCAAATCAGATCCCATCTCCTTCACTTATGCTTGGGATCTTATTTTCCCTTTCAAGCCCCTCTCCTCCCAAGTTGCTTGTTCT
mRNA sequenceShow/hide mRNA sequence
GGCAACTGCCAATGCTCGTTGGGTGACATTTCAATCAAGCAAGAAGCAACTGAAAAAAGAGTTGGAGGGCAGCAAGAATGGTTAGTGACAGTCTCAAACAACTGTGTTTG
TTCTCAGTACAATGTGAAGTTGGATTGCACTGGATTTTCCTCAGAGGAGATTGTTGATTCATCAAAGTTAACAAATACTGGGAATGAGTGTTTGATCAACGGTGGTCAGC
CAATCTTCAAATCAGATCCCATCTCCTTCACTTATGCTTGGGATCTTATTTTCCCTTTCAAGCCCCTCTCCTCCCAAGTTGCTTGTTCT
Protein sequenceShow/hide protein sequence
GNCQCSLGDISIKQEATEKRVGGQQEWLVTVSNNCVCSQYNVKLDCTGFSSEEIVDSSKLTNTGNECLINGGQPIFKSDPISFTYAWDLIFPFKPLSSQVACS