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MS008536 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS008536
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDNA ligase
Genome locationscaffold4:2046224..2046580
RNA-Seq ExpressionMS008536
SyntenyMS008536
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7031776.1 hypothetical protein SDJN02_05817, partial [Cucurbita argyrosperma subsp. argyrosperma]1.0e-4179.31Show/hide
Query:  NEYNSSSFSFTHKLKSSILCFRADHGDLGDHEDDASLRSPRSPLKSTASEHTELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEHARYDDEF
        N+Y+   FSFT KLKSSILCFR DHGD  ++E D+S R+PRSPLKS A+E  ELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDE  R DDEF
Subjt:  NEYNSSSFSFTHKLKSSILCFRADHGDLGDHEDDASLRSPRSPLKSTASEHTELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEHARYDDEF

Query:  PIRDFASRLPASPHSS
        PIRDFASRLPASP +S
Subjt:  PIRDFASRLPASPHSS

XP_022138148.1 uncharacterized protein LOC111009386 [Momordica charantia]2.4e-5997.48Show/hide
Query:  MLNNEYNSSSFSFTHKLKSSILCFRADHGDLGDHEDDASLRSPRSPLKSTASEHTELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEHARYD
        MLNNEYNSS FSFTHKLKSSILCFRADHGDLGDHED+ASLRSPRSPLKSTASEHTELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEHARYD
Subjt:  MLNNEYNSSSFSFTHKLKSSILCFRADHGDLGDHEDDASLRSPRSPLKSTASEHTELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEHARYD

Query:  DEFPIRDFASRLPASPHSS
        D+FPIRDFASRLPASPHSS
Subjt:  DEFPIRDFASRLPASPHSS

XP_022940408.1 uncharacterized protein LOC111446022 [Cucurbita moschata]4.5e-4278.15Show/hide
Query:  MLNNEYNSSSFSFTHKLKSSILCFRADHGDLGDHEDDASLRSPRSPLKSTASEHTELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEHARYD
        M+ N+Y+   FSFT KLKSSILCFR DHGD  ++E D+S R+PRSPLKS A+E  ELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDE  R D
Subjt:  MLNNEYNSSSFSFTHKLKSSILCFRADHGDLGDHEDDASLRSPRSPLKSTASEHTELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEHARYD

Query:  DEFPIRDFASRLPASPHSS
        DEFPIRDFASRLPASP +S
Subjt:  DEFPIRDFASRLPASPHSS

XP_022981208.1 uncharacterized protein LOC111480417 [Cucurbita maxima]6.5e-4176.47Show/hide
Query:  MLNNEYNSSSFSFTHKLKSSILCFRADHGDLGDHEDDASLRSPRSPLKSTASEHTELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEHARYD
        M+ NEY+   FSFT KLKSSI CFR DH D  + EDD+S R+PRSPLKS A+E  E+RGMCRNLVARIGR RRRYHHSADFRYDPSSYALNFEDE  R D
Subjt:  MLNNEYNSSSFSFTHKLKSSILCFRADHGDLGDHEDDASLRSPRSPLKSTASEHTELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEHARYD

Query:  DEFPIRDFASRLPASPHSS
        DEFPIRDFASRLPASP +S
Subjt:  DEFPIRDFASRLPASPHSS

XP_023523424.1 uncharacterized protein LOC111787637 [Cucurbita pepo subsp. pepo]1.6e-4280.17Show/hide
Query:  NEYNSSSFSFTHKLKSSILCFRADHGDLGDHEDDASLRSPRSPLKSTASEHTELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEHARYDDEF
        N+Y+   FSFT KLKSSILCFR DHGD  ++EDD+S R+PRSPLKS A+E  ELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDE  R DDEF
Subjt:  NEYNSSSFSFTHKLKSSILCFRADHGDLGDHEDDASLRSPRSPLKSTASEHTELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEHARYDDEF

Query:  PIRDFASRLPASPHSS
        PIRDFASRLPASP +S
Subjt:  PIRDFASRLPASPHSS

TrEMBL top hitse value%identityAlignment
A0A0A0L4E2 Uncharacterized protein6.6e-3171.05Show/hide
Query:  NEYNSSSFSFTHKLKSSILCFRADHGDLGDHEDDASLRSPRSPLKSTASEHTELRGMCRNLVARIG-RSRRRYHHSADFRYDPSSYALNFEDEHARYDDE
        N YN   FSFTHKLKS I CFR DH D   H++ +S  SP   LKS  S+  ELRGMCR+LVARI   SRRRYHHS DFRYDPSSYALNFEDE  RYDDE
Subjt:  NEYNSSSFSFTHKLKSSILCFRADHGDLGDHEDDASLRSPRSPLKSTASEHTELRGMCRNLVARIG-RSRRRYHHSADFRYDPSSYALNFEDEHARYDDE

Query:  FPIRDFASRLPASP
        FPIRDF SRLPASP
Subjt:  FPIRDFASRLPASP

A0A5A7VBS3 DNA ligase8.1e-2968.97Show/hide
Query:  NEYNSSSFSFTHKLKSSI-LCFRADH-GDLGDHEDDASLRSPRSPLKSTASEHTELRGMCRNLVARIG-RSRRRYHHSADFRYDPSSYALNFEDEHARYD
        N YN   FSFTHKLKSSI  CFR DH  +L ++EDD         LKS  S+  ELRGMCR+LVARI   SRRRYHHSADFRYDPSSYALNFEDE  R D
Subjt:  NEYNSSSFSFTHKLKSSI-LCFRADH-GDLGDHEDDASLRSPRSPLKSTASEHTELRGMCRNLVARIG-RSRRRYHHSADFRYDPSSYALNFEDEHARYD

Query:  DEFPIRDFASRLPASP
        +EFPIRDF SRLPASP
Subjt:  DEFPIRDFASRLPASP

A0A6J1CC83 uncharacterized protein LOC1110093861.2e-5997.48Show/hide
Query:  MLNNEYNSSSFSFTHKLKSSILCFRADHGDLGDHEDDASLRSPRSPLKSTASEHTELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEHARYD
        MLNNEYNSS FSFTHKLKSSILCFRADHGDLGDHED+ASLRSPRSPLKSTASEHTELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEHARYD
Subjt:  MLNNEYNSSSFSFTHKLKSSILCFRADHGDLGDHEDDASLRSPRSPLKSTASEHTELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEHARYD

Query:  DEFPIRDFASRLPASPHSS
        D+FPIRDFASRLPASPHSS
Subjt:  DEFPIRDFASRLPASPHSS

A0A6J1FP70 uncharacterized protein LOC1114460222.2e-4278.15Show/hide
Query:  MLNNEYNSSSFSFTHKLKSSILCFRADHGDLGDHEDDASLRSPRSPLKSTASEHTELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEHARYD
        M+ N+Y+   FSFT KLKSSILCFR DHGD  ++E D+S R+PRSPLKS A+E  ELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDE  R D
Subjt:  MLNNEYNSSSFSFTHKLKSSILCFRADHGDLGDHEDDASLRSPRSPLKSTASEHTELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEHARYD

Query:  DEFPIRDFASRLPASPHSS
        DEFPIRDFASRLPASP +S
Subjt:  DEFPIRDFASRLPASPHSS

A0A6J1J1H3 uncharacterized protein LOC1114804173.2e-4176.47Show/hide
Query:  MLNNEYNSSSFSFTHKLKSSILCFRADHGDLGDHEDDASLRSPRSPLKSTASEHTELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEHARYD
        M+ NEY+   FSFT KLKSSI CFR DH D  + EDD+S R+PRSPLKS A+E  E+RGMCRNLVARIGR RRRYHHSADFRYDPSSYALNFEDE  R D
Subjt:  MLNNEYNSSSFSFTHKLKSSILCFRADHGDLGDHEDDASLRSPRSPLKSTASEHTELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEHARYD

Query:  DEFPIRDFASRLPASPHSS
        DEFPIRDFASRLPASP +S
Subjt:  DEFPIRDFASRLPASPHSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G11070.1 unknown protein4.9e-1040.8Show/hide
Query:  HKLKSSILCFRADHGDLGDHEDDASL-----RSPRSP---LKSTASEHTELRGMCRNLVARIGRSRR-----------RYHHS----ADFRYDPSSYALN
        H+++S I C  A+       E +A +     R+PRSP   LKSTA E  ELR  CR + +RI  + R            +HHS     DF YDP SYALN
Subjt:  HKLKSSILCFRADHGDLGDHEDDASL-----RSPRSP---LKSTASEHTELRGMCRNLVARIGRSRR-----------RYHHS----ADFRYDPSSYALN

Query:  FEDEHARYDDEFPIRDFASRLPASP
        FED + R DD+    +F +RLP SP
Subjt:  FEDEHARYDDEFPIRDFASRLPASP

AT5G35090.1 unknown protein1.1e-0935.25Show/hide
Query:  SSFSFTHKLKSSIL---CFRADHGDLGDHEDDASLRSPRSPLKSTASEH---------------TELRGMCRNLVARI--------GRSRRRYHHSADFR
        ++ S   KLKS      CFR  +    D+  D    SP +  KST S H               ++    C++L+ R+        G  +    H+ADF 
Subjt:  SSFSFTHKLKSSIL---CFRADHGDLGDHEDDASLRSPRSPLKSTASEH---------------TELRGMCRNLVARI--------GRSRRRYHHSADFR

Query:  YDPSSYALNFE--DEHARYDDEFPIRDFASRLPASPHSS
        YDPSSYALNF+  DE     D FP+R+F++RLP SP SS
Subjt:  YDPSSYALNFE--DEHARYDDEFPIRDFASRLPASPHSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGAACAACGAGTACAATTCATCTTCATTTTCCTTCACTCACAAGCTCAAATCCTCCATCCTCTGCTTCCGCGCCGACCATGGCGATTTGGGAGATCACGAAGACGA
TGCCTCTCTAAGGAGCCCTAGATCGCCGCTCAAATCCACGGCCAGCGAGCATACTGAGCTCCGGGGAATGTGCCGGAATCTGGTGGCGAGGATCGGCCGGAGCCGGCGGC
GGTACCATCACTCCGCGGATTTCAGATACGATCCTTCTAGCTATGCTCTTAATTTCGAGGACGAACACGCTCGCTACGATGACGAATTTCCGATTAGAGATTTCGCTTCG
AGATTGCCGGCGTCGCCGCATTCTTCC
mRNA sequenceShow/hide mRNA sequence
ATGTTGAACAACGAGTACAATTCATCTTCATTTTCCTTCACTCACAAGCTCAAATCCTCCATCCTCTGCTTCCGCGCCGACCATGGCGATTTGGGAGATCACGAAGACGA
TGCCTCTCTAAGGAGCCCTAGATCGCCGCTCAAATCCACGGCCAGCGAGCATACTGAGCTCCGGGGAATGTGCCGGAATCTGGTGGCGAGGATCGGCCGGAGCCGGCGGC
GGTACCATCACTCCGCGGATTTCAGATACGATCCTTCTAGCTATGCTCTTAATTTCGAGGACGAACACGCTCGCTACGATGACGAATTTCCGATTAGAGATTTCGCTTCG
AGATTGCCGGCGTCGCCGCATTCTTCC
Protein sequenceShow/hide protein sequence
MLNNEYNSSSFSFTHKLKSSILCFRADHGDLGDHEDDASLRSPRSPLKSTASEHTELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEHARYDDEFPIRDFAS
RLPASPHSS