CuGenDBv2

Gene ID	MS008581
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Protein FAM33A
Genome location	scaffold4:2360740..2362550
RNA-Seq Expression	MS008581
Synteny	MS008581
Gene Ontology terms	GO:0000278 - mitotic cell cycle (biological process) GO:0007059 - chromosome segregation (biological process) GO:0051301 - cell division (biological process) GO:0000940 - condensed chromosome outer kinetochore (cellular component) GO:0005737 - cytoplasm (cellular component) GO:0005876 - spindle microtubule (cellular component) GO:0008017 - microtubule binding (molecular function)
InterPro domains	IPR026762 - Spindle and kinetochore-associated protein 2 IPR042091 - Ska2, N-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6591515.1 hypothetical protein SDJN03_13861, partial [Cucurbita argyrosperma subsp. sororia]

1.1e-47

76.09

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Query:  MGLHHLHQHHQAADGLANLFTKANHDLSVVQYRLEKEFQQIYPDSVRALIGLRRNFFFVTFWQANPMKLVSRIKKIRDDISTLQEQCREILMAKQDVIDK
        MGL HLHQHHQAADGL NLFTKANHDLSVVQYRLEKEFQQIYPDS                  ANPMKL  RIKKIRDDISTL+EQCRE+LMAKQDVIDK
Subjt:  MGLHHLHQHHQAADGLANLFTKANHDLSVVQYRLEKEFQQIYPDSVRALIGLRRNFFFVTFWQANPMKLVSRIKKIRDDISTLQEQCREILMAKQDVIDK

Query:  ARTVLVGNRNMLQKMQASMGIPLVSDLDDHAFAQFKKV
        ARTVLVGNRNM+ KMQASMG P VSD DD AF QFK++
Subjt:  ARTVLVGNRNMLQKMQASMGIPLVSDLDDHAFAQFKKV

KAG7024402.1 hypothetical protein SDJN02_13216, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.6e-49

76.26

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Query:  MGLHHLHQHHQAADGLANLFTKANHDLSVVQYRLEKEFQQIYPDS-VRALIGLRRNFFFVTFWQANPMKLVSRIKKIRDDISTLQEQCREILMAKQDVID
        MGL HLHQHHQAADGL NLFTKANHDLSVVQYRLEKEFQQIYPDS +  ++  +  +  V    ANPMKL  RIKKIRDDISTL+EQCRE+LMAKQDVID
Subjt:  MGLHHLHQHHQAADGLANLFTKANHDLSVVQYRLEKEFQQIYPDS-VRALIGLRRNFFFVTFWQANPMKLVSRIKKIRDDISTLQEQCREILMAKQDVID

Query:  KARTVLVGNRNMLQKMQASMGIPLVSDLDDHAFAQFKKV
        KARTVLVGNRNM+ KMQASMG P VSD DD AF QFK++
Subjt:  KARTVLVGNRNMLQKMQASMGIPLVSDLDDHAFAQFKKV

XP_022141272.1 spindle and kinetochore-associated protein 2 [Momordica charantia]

3.7e-56

86.23

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Query:  MGLHHLHQHHQAADGLANLFTKANHDLSVVQYRLEKEFQQIYPDSVRALIGLRRNFFFVTFWQANPMKLVSRIKKIRDDISTLQEQCREILMAKQDVIDK
        MGLHHLHQHHQAADGLANLFTKANHDLSVVQYRLEKEFQQIYPDS                  ANPMKLVSRIKKIRDDISTLQEQCREILMAKQDVIDK
Subjt:  MGLHHLHQHHQAADGLANLFTKANHDLSVVQYRLEKEFQQIYPDSVRALIGLRRNFFFVTFWQANPMKLVSRIKKIRDDISTLQEQCREILMAKQDVIDK

Query:  ARTVLVGNRNMLQKMQASMGIPLVSDLDDHAFAQFKKV
        ARTVLVGNRNMLQKMQASMGIPLVSDLDDHAFAQFKK+
Subjt:  ARTVLVGNRNMLQKMQASMGIPLVSDLDDHAFAQFKKV

XP_022935898.1 spindle and kinetochore-associated protein 2 isoform X2 [Cucurbita moschata]

1.1e-47

76.09

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Query:  MGLHHLHQHHQAADGLANLFTKANHDLSVVQYRLEKEFQQIYPDSVRALIGLRRNFFFVTFWQANPMKLVSRIKKIRDDISTLQEQCREILMAKQDVIDK
        MGL HLHQHHQAADGL NLFTKANHDLSVVQYRLEKEFQQIYPDS                  ANPMKL  RIKKIRDDISTL+EQCRE+LMAKQDVIDK
Subjt:  MGLHHLHQHHQAADGLANLFTKANHDLSVVQYRLEKEFQQIYPDSVRALIGLRRNFFFVTFWQANPMKLVSRIKKIRDDISTLQEQCREILMAKQDVIDK

Query:  ARTVLVGNRNMLQKMQASMGIPLVSDLDDHAFAQFKKV
        ARTVLVGNRNM+ KMQASMG P VSD DD AF QFK++
Subjt:  ARTVLVGNRNMLQKMQASMGIPLVSDLDDHAFAQFKKV

XP_038898183.1 spindle and kinetochore-associated protein 2 [Benincasa hispida]

1.2e-49

77.54

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Query:  MGLHHLHQHHQAADGLANLFTKANHDLSVVQYRLEKEFQQIYPDSVRALIGLRRNFFFVTFWQANPMKLVSRIKKIRDDISTLQEQCREILMAKQDVIDK
        M L HLHQHHQAADGL NLFTKANHDLSVVQYRLEKEFQQIYP+S                  ANPMKLVSRIKKIRDDISTL+EQCRE+LMAKQDVIDK
Subjt:  MGLHHLHQHHQAADGLANLFTKANHDLSVVQYRLEKEFQQIYPDSVRALIGLRRNFFFVTFWQANPMKLVSRIKKIRDDISTLQEQCREILMAKQDVIDK

Query:  ARTVLVGNRNMLQKMQASMGIPLVSDLDDHAFAQFKKV
        ARTVLVGNRNMLQK+QASMG+P VSDLDD AFA+FK++
Subjt:  ARTVLVGNRNMLQKMQASMGIPLVSDLDDHAFAQFKKV

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BUQ8 Protein FAM33A

2.6e-47

75.54

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Query:  MGL-HHLHQHHQAADGLANLFTKANHDLSVVQYRLEKEFQQIYPDSVRALIGLRRNFFFVTFWQANPMKLVSRIKKIRDDISTLQEQCREILMAKQDVID
        MG+ HHLHQHHQAADGL NLFTKAN DLSVVQYRLEKEFQQIYP+S                  ANPMKLVSRIKKI+DDISTL+EQCRE+L AKQDVID
Subjt:  MGL-HHLHQHHQAADGLANLFTKANHDLSVVQYRLEKEFQQIYPDSVRALIGLRRNFFFVTFWQANPMKLVSRIKKIRDDISTLQEQCREILMAKQDVID

Query:  KARTVLVGNRNMLQKMQASMGIPLVSDLDDHAFAQFKKV
        KARTVL+GNRNMLQKMQASMGIP VSDLDD A A+FK++
Subjt:  KARTVLVGNRNMLQKMQASMGIPLVSDLDDHAFAQFKKV

A0A5A7VFB8 Protein FAM33A

2.6e-47

75.54

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Query:  MGL-HHLHQHHQAADGLANLFTKANHDLSVVQYRLEKEFQQIYPDSVRALIGLRRNFFFVTFWQANPMKLVSRIKKIRDDISTLQEQCREILMAKQDVID
        MG+ HHLHQHHQAADGL NLFTKAN DLSVVQYRLEKEFQQIYP+S                  ANPMKLVSRIKKI+DDISTL+EQCRE+L AKQDVID
Subjt:  MGL-HHLHQHHQAADGLANLFTKANHDLSVVQYRLEKEFQQIYPDSVRALIGLRRNFFFVTFWQANPMKLVSRIKKIRDDISTLQEQCREILMAKQDVID

Query:  KARTVLVGNRNMLQKMQASMGIPLVSDLDDHAFAQFKKV
        KARTVL+GNRNMLQKMQASMGIP VSDLDD A A+FK++
Subjt:  KARTVLVGNRNMLQKMQASMGIPLVSDLDDHAFAQFKKV

A0A6J1CJF1 Protein FAM33A

1.8e-56

86.23

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Query:  MGLHHLHQHHQAADGLANLFTKANHDLSVVQYRLEKEFQQIYPDSVRALIGLRRNFFFVTFWQANPMKLVSRIKKIRDDISTLQEQCREILMAKQDVIDK
        MGLHHLHQHHQAADGLANLFTKANHDLSVVQYRLEKEFQQIYPDS                  ANPMKLVSRIKKIRDDISTLQEQCREILMAKQDVIDK
Subjt:  MGLHHLHQHHQAADGLANLFTKANHDLSVVQYRLEKEFQQIYPDSVRALIGLRRNFFFVTFWQANPMKLVSRIKKIRDDISTLQEQCREILMAKQDVIDK

Query:  ARTVLVGNRNMLQKMQASMGIPLVSDLDDHAFAQFKKV
        ARTVLVGNRNMLQKMQASMGIPLVSDLDDHAFAQFKK+
Subjt:  ARTVLVGNRNMLQKMQASMGIPLVSDLDDHAFAQFKKV

A0A6J1F6V9 Protein FAM33A

5.3e-48

76.09

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Query:  MGLHHLHQHHQAADGLANLFTKANHDLSVVQYRLEKEFQQIYPDSVRALIGLRRNFFFVTFWQANPMKLVSRIKKIRDDISTLQEQCREILMAKQDVIDK
        MGL HLHQHHQAADGL NLFTKANHDLSVVQYRLEKEFQQIYPDS                  ANPMKL  RIKKIRDDISTL+EQCRE+LMAKQDVIDK
Subjt:  MGLHHLHQHHQAADGLANLFTKANHDLSVVQYRLEKEFQQIYPDSVRALIGLRRNFFFVTFWQANPMKLVSRIKKIRDDISTLQEQCREILMAKQDVIDK

Query:  ARTVLVGNRNMLQKMQASMGIPLVSDLDDHAFAQFKKV
        ARTVLVGNRNM+ KMQASMG P VSD DD AF QFK++
Subjt:  ARTVLVGNRNMLQKMQASMGIPLVSDLDDHAFAQFKKV

A0A6J1FBS9 Protein FAM33A

5.3e-48

76.09

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Query:  MGLHHLHQHHQAADGLANLFTKANHDLSVVQYRLEKEFQQIYPDSVRALIGLRRNFFFVTFWQANPMKLVSRIKKIRDDISTLQEQCREILMAKQDVIDK
        MGL HLHQHHQAADGL NLFTKANHDLSVVQYRLEKEFQQIYPDS                  ANPMKL  RIKKIRDDISTL+EQCRE+LMAKQDVIDK
Subjt:  MGLHHLHQHHQAADGLANLFTKANHDLSVVQYRLEKEFQQIYPDSVRALIGLRRNFFFVTFWQANPMKLVSRIKKIRDDISTLQEQCREILMAKQDVIDK

Query:  ARTVLVGNRNMLQKMQASMGIPLVSDLDDHAFAQFKKV
        ARTVLVGNRNM+ KMQASMG P VSD DD AF QFK++
Subjt:  ARTVLVGNRNMLQKMQASMGIPLVSDLDDHAFAQFKKV

SwissProt top hits

e value

%identity

Alignment

Q8WVK7 Spindle and kinetochore-associated protein 2

3.5e-04

25.6

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Query:  DGLANLFTKANHDLSVVQYRLEKEFQQIYPDSVRALIGLRRNFFFVTFWQANPMKLVSRIKKIRDDISTLQEQCREILMAKQDVIDKARTVLVGNRNMLQ
        D L  +F KA  DL  +QYRLE E +  +PDS                 + NP+ L+  +  I+    TL  + + + + +++   +    +    NM+Q
Subjt:  DGLANLFTKANHDLSVVQYRLEKEFQQIYPDSVRALIGLRRNFFFVTFWQANPMKLVSRIKKIRDDISTLQEQCREILMAKQDVIDKARTVLVGNRNMLQ

Query:  KMQASMGIPL--VSDLDDHAFAQFK
        K+Q    + L  ++  +  A  QFK
Subjt:  KMQASMGIPL--VSDLDDHAFAQFK

Arabidopsis top hits

e value

%identity

Alignment

AT2G24970.1 unknown protein

1.2e-28

47.73

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Query:  HQHHQAADGLANLFTKANHDLSVVQYRLEKEFQQIYPDSVRALIGLRRNFFFVTFWQANPMKLVSRIKKIRDDISTLQEQCREILMAKQDVIDKARTVLV
        + HHQA D L N+F++A+HDL+VV  +L+KEFQQ+YP +                  ANPMKL+ RIKK+++D++ L+ QC ++L AKQD+IDKA+T LV
Subjt:  HQHHQAADGLANLFTKANHDLSVVQYRLEKEFQQIYPDSVRALIGLRRNFFFVTFWQANPMKLVSRIKKIRDDISTLQEQCREILMAKQDVIDKARTVLV

Query:  GNRNMLQKMQASMGIPLVSDLDDHAFAQFKKV
        GN N++QKM AS+G     D DD A A F ++
Subjt:  GNRNMLQKMQASMGIPLVSDLDDHAFAQFKKV

Sequences

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CDS sequence

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ATGGGGCTTCATCATCTTCATCAGCATCATCAAGCGGCCGATGGATTGGCGAACTTGTTCACGAAGGCGAATCATGATCTCTCGGTGGTTCAGTACAGGCTCGAGAAGGA
GTTCCAGCAAATCTATCCCGACAGCGTAAGAGCACTAATTGGTTTGCGGAGGAATTTCTTTTTTGTAACTTTTTGGCAGGCTAATCCGATGAAGTTAGTTTCTAGGATAA
AGAAGATACGGGACGATATATCAACCTTGCAAGAGCAGTGTCGTGAAATTTTGATGGCCAAACAGGATGTAATTGATAAGGCTCGGACGGTTCTGGTTGGGAACAGAAAC
ATGCTGCAAAAAATGCAAGCATCCATGGGCATACCCCTTGTCAGCGATCTCGATGATCATGCTTTTGCGCAATTCAAGAAGGTA

mRNA sequence

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Protein sequence

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MGLHHLHQHHQAADGLANLFTKANHDLSVVQYRLEKEFQQIYPDSVRALIGLRRNFFFVTFWQANPMKLVSRIKKIRDDISTLQEQCREILMAKQDVIDKARTVLVGNRN
MLQKMQASMGIPLVSDLDDHAFAQFKKV

MS008581 (gene) of Bitter gourd (TR) v1 genome