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MS008629 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS008629
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionleucine-rich repeat extensin-like protein 1
Genome locationscaffold4:2736167..2736580
RNA-Seq ExpressionMS008629
SyntenyMS008629
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8649911.1 hypothetical protein Csa_012510 [Cucumis sativus]3.5e-3068.97Show/hide
Query:  GLRVTALALFLAASEAQMAVPSSGGQLCISDCSTCPVICTAPPPPILDSPPPPLPRSLPTLTWPPPLGPPSYFYWGSPPPPVPNYFVGAQPSGQMPQTAG
        GL + A  LF A+S+AQMAVPS+ GQLCISDCSTCPVICTAPPPP+   PPPP P         PP   PSY+ WG PPPPV NYF+GA+PSG+MPQT G
Subjt:  GLRVTALALFLAASEAQMAVPSSGGQLCISDCSTCPVICTAPPPPILDSPPPPLPRSLPTLTWPPPLGPPSYFYWGSPPPPVPNYFVGAQPSGQMPQTAG

Query:  PRDYSYPYYYFYSSKS
        PRDYSYPYYYFYSS S
Subjt:  PRDYSYPYYYFYSSKS

KAG6608366.1 Conserved oligomeric Golgi complex subunit 8, partial [Cucurbita argyrosperma subsp. sororia]7.6e-2561.24Show/hide
Query:  LGLRVTALALFLAASEAQMAVPSSGGQLCISDCSTCPVICTAPPPPILDS-PPPPLPRSLPTLTWPPPLGPPSYFYWGSPPPPVPNYFVGAQPSGQMPQT
        LGL V A ALFL  S+AQ+ VPS+ GQLCIS C TCPV+CT P P   ++  PPP P        PPP    SYF  G PPPPV NY  GAQPSGQMPQT
Subjt:  LGLRVTALALFLAASEAQMAVPSSGGQLCISDCSTCPVICTAPPPPILDS-PPPPLPRSLPTLTWPPPLGPPSYFYWGSPPPPVPNYFVGAQPSGQMPQT

Query:  AGPRDYSYPYYYFYSSKSRSLSPFSTFVL
         GPRDYSYPYYYFYSS   S S  STF++
Subjt:  AGPRDYSYPYYYFYSSKSRSLSPFSTFVL

XP_022940707.1 leucine-rich repeat extensin-like protein 2 [Cucurbita moschata]2.5e-2359.69Show/hide
Query:  LGLRVTALALFLAASEAQMAVPSSGGQLCISDCSTCPVICTAPPPPILDS-PPPPLPRSLPTLTWPPPLGPPSYFYWGSPPPPVPNYFVGAQPSGQMPQT
        LGL V A ALFL  S+AQ+ VPS+ GQLCIS C TCPV+CT P P   ++  PPP P        PPP    SYF  G P PPV NY  GAQPSGQMPQT
Subjt:  LGLRVTALALFLAASEAQMAVPSSGGQLCISDCSTCPVICTAPPPPILDS-PPPPLPRSLPTLTWPPPLGPPSYFYWGSPPPPVPNYFVGAQPSGQMPQT

Query:  AGPRDYSYPYYYFYSSKSRSLSPFSTFVL
         GPRDYSYPYYYFYSS   S S   TF++
Subjt:  AGPRDYSYPYYYFYSSKSRSLSPFSTFVL

XP_022981722.1 leucine-rich repeat extensin-like protein 1 [Cucurbita maxima]5.1e-2958.9Show/hide
Query:  LGLRVTALALFLAASEAQMAVPSSGGQLCISDCSTCPVICTAPPP--------PILDSPPPPLPRSLPTLTWPPPLGPPSYFYWGSPPPPVPNYFVGAQP
        LGL V A ALFL  S+AQ+ VPS+  QLCIS C TCPV+CT P P          + SPPPP P        PPP    SYF+ G PPPPV NY  GAQP
Subjt:  LGLRVTALALFLAASEAQMAVPSSGGQLCISDCSTCPVICTAPPP--------PILDSPPPPLPRSLPTLTWPPPLGPPSYFYWGSPPPPVPNYFVGAQP

Query:  SGQMPQTAGPRDYSYPYYYFYSSKSRSLSPFSTFVLSFVCLFHFVF
        SGQMPQT GPRDYSYPYYYFYSS   S +  STF+L F C FH VF
Subjt:  SGQMPQTAGPRDYSYPYYYFYSSKSRSLSPFSTFVLSFVCLFHFVF

XP_023523402.1 leucine-rich repeat extensin-like protein 2 [Cucurbita pepo subsp. pepo]4.3e-2861.48Show/hide
Query:  ALALFLAASEAQMAVPSSGGQLCISDCSTCPVICTAPPPPILDS---PPPPLPRSLPTLTWPPPLGPPSYFYWGSPPPPVPNYFVGAQPSGQMPQTAGPR
        A ALFL  S+AQ+ VPS+ GQLCIS C TCPV+CT P P   ++   PPPP P        PPP    SYF  G PPPPV NY  GAQPSGQMPQT GPR
Subjt:  ALALFLAASEAQMAVPSSGGQLCISDCSTCPVICTAPPPPILDS---PPPPLPRSLPTLTWPPPLGPPSYFYWGSPPPPVPNYFVGAQPSGQMPQTAGPR

Query:  DYSYPYYYFYSSKSRSLSPFSTFVLSFVCLFHFVF
        DYSYPYYYFYSS   S S  STF++ FVC FH VF
Subjt:  DYSYPYYYFYSSKSRSLSPFSTFVLSFVCLFHFVF

TrEMBL top hitse value%identityAlignment
A0A0A0L054 Microtubule associated protein (Ase1)1.4e-3566.18Show/hide
Query:  GLRVTALALFLAASEAQMAVPSSGGQLCISDCSTCPVICTAPPPPILDSPPPPLPRSLPTLTWPPPLGPPSYFYWGSPPPPVPNYFVGAQPSGQMPQTAG
        GL + A  LF A+S+AQMAVPS+ GQLCISDCSTCPVICTAPPPP+   PPPP P         PP   PSY+ WG PPPPV NYF+GA+PSG+MPQT G
Subjt:  GLRVTALALFLAASEAQMAVPSSGGQLCISDCSTCPVICTAPPPPILDSPPPPLPRSLPTLTWPPPLGPPSYFYWGSPPPPVPNYFVGAQPSGQMPQTAG

Query:  PRDYSYPYYYFYSSKSRSLSPFSTFVLSFVCLFHFV
        PRDYSYPYYYFYSS S S +  S F++ FVCL HFV
Subjt:  PRDYSYPYYYFYSSKSRSLSPFSTFVLSFVCLFHFV

A0A2N9HA71 Uncharacterized protein9.7e-1849.38Show/hide
Query:  LALFLAASEAQMAVPSSGGQLCISDCSTCPVICTAPPPPILD------------SPP------PPLPRSLPTLTWPPPLGPP---SYFYWGSPPPPVPNY
        L L    SE Q+  PSS G LCISDC+TCPVIC +PPPP+ +            SPP      PP P S P+   PPP  PP   SY  WG+PPPP   Y
Subjt:  LALFLAASEAQMAVPSSGGQLCISDCSTCPVICTAPPPPILD------------SPP------PPLPRSLPTLTWPPPLGPP---SYFYWGSPPPPVPNY

Query:  FVGAQPSG----QMPQTAGPRDYSYPYYYFYSSKSRSL----SPFSTFVLSFVCLFHFVF
        F    PSG    +MP  AGP DY YPYYYFYSSK+ S     + F  F+L F  LFHFVF
Subjt:  FVGAQPSG----QMPQTAGPRDYSYPYYYFYSSKSRSL----SPFSTFVLSFVCLFHFVF

A0A5N6RNK5 Uncharacterized protein1.0e-1946.15Show/hide
Query:  LGLRVTALALFLAASEAQMAVPSSGGQLCISDCSTCPVICTAPPPPILDSPPPPLPRSLPTLTWPPPL----GPPS----------YFYWGSPPPPVPNY
        L + +  L +F   + A      S  +LCISDC+TCPVIC+ PPPP+L S PPP P +  +   PPPL     PPS          Y  WGSPPPP   Y
Subjt:  LGLRVTALALFLAASEAQMAVPSSGGQLCISDCSTCPVICTAPPPPILDSPPPPLPRSLPTLTWPPPL----GPPS----------YFYWGSPPPPVPNY

Query:  FVGAQPSG---QMPQTAG-PRDYSYPYYYFYSSKSRSLSPFSTFVLSFVCLFHFVF
        +    PSG    +P T G PRDY YPYYYFY+S + SLS  ++FV   + LFHFVF
Subjt:  FVGAQPSG---QMPQTAG-PRDYSYPYYYFYSSKSRSLSPFSTFVLSFVCLFHFVF

A0A6J1FKD3 leucine-rich repeat extensin-like protein 21.2e-2359.69Show/hide
Query:  LGLRVTALALFLAASEAQMAVPSSGGQLCISDCSTCPVICTAPPPPILDS-PPPPLPRSLPTLTWPPPLGPPSYFYWGSPPPPVPNYFVGAQPSGQMPQT
        LGL V A ALFL  S+AQ+ VPS+ GQLCIS C TCPV+CT P P   ++  PPP P        PPP    SYF  G P PPV NY  GAQPSGQMPQT
Subjt:  LGLRVTALALFLAASEAQMAVPSSGGQLCISDCSTCPVICTAPPPPILDS-PPPPLPRSLPTLTWPPPLGPPSYFYWGSPPPPVPNYFVGAQPSGQMPQT

Query:  AGPRDYSYPYYYFYSSKSRSLSPFSTFVL
         GPRDYSYPYYYFYSS   S S   TF++
Subjt:  AGPRDYSYPYYYFYSSKSRSLSPFSTFVL

A0A6J1IUS7 leucine-rich repeat extensin-like protein 12.5e-2958.9Show/hide
Query:  LGLRVTALALFLAASEAQMAVPSSGGQLCISDCSTCPVICTAPPP--------PILDSPPPPLPRSLPTLTWPPPLGPPSYFYWGSPPPPVPNYFVGAQP
        LGL V A ALFL  S+AQ+ VPS+  QLCIS C TCPV+CT P P          + SPPPP P        PPP    SYF+ G PPPPV NY  GAQP
Subjt:  LGLRVTALALFLAASEAQMAVPSSGGQLCISDCSTCPVICTAPPP--------PILDSPPPPLPRSLPTLTWPPPLGPPSYFYWGSPPPPVPNYFVGAQP

Query:  SGQMPQTAGPRDYSYPYYYFYSSKSRSLSPFSTFVLSFVCLFHFVF
        SGQMPQT GPRDYSYPYYYFYSS   S +  STF+L F C FH VF
Subjt:  SGQMPQTAGPRDYSYPYYYFYSSKSRSLSPFSTFVLSFVCLFHFVF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G11990.1 proline-rich family protein1.5e-0733.53Show/hide
Query:  LGLRVTALALFLAASEAQMAVPSSGGQ-------LCISDCSTCPVICTAPPP--------------PILDSPPPPLP--RSLPTLTW---PPPL------
        +GL V  +AL +      M V SS          LCIS+CSTCP IC+ PP               P+  SPPPP P   S P L+    PPPL      
Subjt:  LGLRVTALALFLAASEAQMAVPSSGGQ-------LCISDCSTCPVICTAPPP--------------PILDSPPPPLP--RSLPTLTW---PPPL------

Query:  GPPSYFYWGSPPPPVP--------NYFVGAQPSGQMPQTAGPRD--YSYPYYYFYSSKSRSLSPFSTFVLSFV
         PP ++Y+ S PPP P           V + P     Q+ G +   Y +PY+YFY++ + +L   S+F+++ V
Subjt:  GPPSYFYWGSPPPPVP--------NYFVGAQPSGQMPQTAGPRD--YSYPYYYFYSSKSRSLSPFSTFVLSFV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTGGGGCTTCGGGTTACGGCATTGGCTCTGTTTTTAGCGGCGTCCGAGGCTCAAATGGCCGTGCCCTCGTCTGGCGGCCAGCTCTGCATCAGCGATTGCTCCACGTGTCC
GGTGATCTGTACGGCGCCACCCCCACCAATTCTCGACTCGCCGCCTCCGCCTCTGCCGAGGTCATTGCCGACTCTGACGTGGCCGCCGCCGCTGGGTCCTCCGTCTTATT
TTTACTGGGGTAGTCCGCCGCCGCCGGTTCCTAATTACTTCGTCGGCGCGCAGCCTTCGGGACAGATGCCTCAGACGGCGGGGCCTCGGGATTATTCTTACCCTTACTAC
TATTTCTACAGTTCAAAATCGCGTTCCCTCTCTCCGTTTTCCACGTTCGTTCTGTCCTTTGTATGTTTGTTTCATTTTGTTTTC
mRNA sequenceShow/hide mRNA sequence
TTGGGGCTTCGGGTTACGGCATTGGCTCTGTTTTTAGCGGCGTCCGAGGCTCAAATGGCCGTGCCCTCGTCTGGCGGCCAGCTCTGCATCAGCGATTGCTCCACGTGTCC
GGTGATCTGTACGGCGCCACCCCCACCAATTCTCGACTCGCCGCCTCCGCCTCTGCCGAGGTCATTGCCGACTCTGACGTGGCCGCCGCCGCTGGGTCCTCCGTCTTATT
TTTACTGGGGTAGTCCGCCGCCGCCGGTTCCTAATTACTTCGTCGGCGCGCAGCCTTCGGGACAGATGCCTCAGACGGCGGGGCCTCGGGATTATTCTTACCCTTACTAC
TATTTCTACAGTTCAAAATCGCGTTCCCTCTCTCCGTTTTCCACGTTCGTTCTGTCCTTTGTATGTTTGTTTCATTTTGTTTTC
Protein sequenceShow/hide protein sequence
LGLRVTALALFLAASEAQMAVPSSGGQLCISDCSTCPVICTAPPPPILDSPPPPLPRSLPTLTWPPPLGPPSYFYWGSPPPPVPNYFVGAQPSGQMPQTAGPRDYSYPYY
YFYSSKSRSLSPFSTFVLSFVCLFHFVF