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MS008637 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS008637
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionHeat shock factor protein
Genome locationscaffold4:2787431..2787634
RNA-Seq ExpressionMS008637
SyntenyMS008637
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0003824 - catalytic activity (molecular function)
GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domainsIPR000232 - Heat shock factor (HSF)-type, DNA-binding
IPR036388 - Winged helix-like DNA-binding domain superfamily
IPR036390 - Winged helix DNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6598287.1 Heat shock factor protein HSF30, partial [Cucurbita argyrosperma subsp. sororia]6.7e-0644.12Show/hide
Query:  GVDKADPPAFLTKMFQMAEDPVTVSIVSWSRARERGSVSEFFHVVDARFLATWSMVNFSSFISELNEY
        G+    PP FLTK F+M EDP+T SIVSWS+AR    V ++     +     +   NFSSF+ +LN Y
Subjt:  GVDKADPPAFLTKMFQMAEDPVTVSIVSWSRARERGSVSEFFHVVDARFLATWSMVNFSSFISELNEY

KAG7029260.1 Heat shock factor protein HSF30, partial [Cucurbita argyrosperma subsp. argyrosperma]6.7e-0644.12Show/hide
Query:  GVDKADPPAFLTKMFQMAEDPVTVSIVSWSRARERGSVSEFFHVVDARFLATWSMVNFSSFISELNEY
        G+    PP FLTK F+M EDP+T SIVSWS+AR    V ++     +     +   NFSSF+ +LN Y
Subjt:  GVDKADPPAFLTKMFQMAEDPVTVSIVSWSRARERGSVSEFFHVVDARFLATWSMVNFSSFISELNEY

XP_016900029.1 PREDICTED: heat stress transcription factor A-2 [Cucumis melo]5.1e-0647.06Show/hide
Query:  GVDKADPPAFLTKMFQMAEDPVTVSIVSWSRARERGSVSEFFHVVDARFLATWSMVNFSSFISELNEY
        G+    PP FLTK F+M EDP+T SIVSWSRAR    V ++           +   NFSSFI +LN Y
Subjt:  GVDKADPPAFLTKMFQMAEDPVTVSIVSWSRARERGSVSEFFHVVDARFLATWSMVNFSSFISELNEY

XP_022961710.1 heat stress transcription factor A-2-like [Cucurbita moschata]6.7e-0644.12Show/hide
Query:  GVDKADPPAFLTKMFQMAEDPVTVSIVSWSRARERGSVSEFFHVVDARFLATWSMVNFSSFISELNEY
        G+    PP FLTK F+M EDP+T SIVSWS+AR    V ++     +     +   NFSSF+ +LN Y
Subjt:  GVDKADPPAFLTKMFQMAEDPVTVSIVSWSRARERGSVSEFFHVVDARFLATWSMVNFSSFISELNEY

XP_031736391.1 heat stress transcription factor A-2 [Cucumis sativus]5.1e-0647.06Show/hide
Query:  GVDKADPPAFLTKMFQMAEDPVTVSIVSWSRARERGSVSEFFHVVDARFLATWSMVNFSSFISELNEY
        G+    PP FLTK F+M EDP+T SIVSWSRAR    V ++           +   NFSSFI +LN Y
Subjt:  GVDKADPPAFLTKMFQMAEDPVTVSIVSWSRARERGSVSEFFHVVDARFLATWSMVNFSSFISELNEY

TrEMBL top hitse value%identityAlignment
A0A0A0LKS1 HSF_DOMAIN domain-containing protein2.5e-0647.06Show/hide
Query:  GVDKADPPAFLTKMFQMAEDPVTVSIVSWSRARERGSVSEFFHVVDARFLATWSMVNFSSFISELNEY
        G+    PP FLTK F+M EDP+T SIVSWSRAR    V ++           +   NFSSFI +LN Y
Subjt:  GVDKADPPAFLTKMFQMAEDPVTVSIVSWSRARERGSVSEFFHVVDARFLATWSMVNFSSFISELNEY

A0A1S4DVL9 heat stress transcription factor A-22.5e-0647.06Show/hide
Query:  GVDKADPPAFLTKMFQMAEDPVTVSIVSWSRARERGSVSEFFHVVDARFLATWSMVNFSSFISELNEY
        G+    PP FLTK F+M EDP+T SIVSWSRAR    V ++           +   NFSSFI +LN Y
Subjt:  GVDKADPPAFLTKMFQMAEDPVTVSIVSWSRARERGSVSEFFHVVDARFLATWSMVNFSSFISELNEY

A0A455PAZ2 HSF3.2e-0644.12Show/hide
Query:  GVDKADPPAFLTKMFQMAEDPVTVSIVSWSRARERGSVSEFFHVVDARFLATWSMVNFSSFISELNEY
        G+    PP FLTK F+M EDP+T SIVSWS+AR    V ++     +     +   NFSSF+ +LN Y
Subjt:  GVDKADPPAFLTKMFQMAEDPVTVSIVSWSRARERGSVSEFFHVVDARFLATWSMVNFSSFISELNEY

A0A5A7V104 Heat stress transcription factor A-22.5e-0647.06Show/hide
Query:  GVDKADPPAFLTKMFQMAEDPVTVSIVSWSRARERGSVSEFFHVVDARFLATWSMVNFSSFISELNEY
        G+    PP FLTK F+M EDP+T SIVSWSRAR    V ++           +   NFSSFI +LN Y
Subjt:  GVDKADPPAFLTKMFQMAEDPVTVSIVSWSRARERGSVSEFFHVVDARFLATWSMVNFSSFISELNEY

A0A6J1KAS8 heat stress transcription factor A-2-like3.2e-0644.12Show/hide
Query:  GVDKADPPAFLTKMFQMAEDPVTVSIVSWSRARERGSVSEFFHVVDARFLATWSMVNFSSFISELNEY
        G+    PP FLTK F+M EDP+T SIVSWS+AR    V ++     +     +   NFSSF+ +LN Y
Subjt:  GVDKADPPAFLTKMFQMAEDPVTVSIVSWSRARERGSVSEFFHVVDARFLATWSMVNFSSFISELNEY

SwissProt top hitse value%identityAlignment
O80982 Heat stress transcription factor A-21.1e-0639.71Show/hide
Query:  GVDKADPPAFLTKMFQMAEDPVTVSIVSWSRARERGSVSEFFHVVDARFLATWSMVNFSSFISELNEY
        G+++  PP FLTK ++M EDP T ++VSWS  R    V +            +   NFSSFI +LN Y
Subjt:  GVDKADPPAFLTKMFQMAEDPVTVSIVSWSRARERGSVSEFFHVVDARFLATWSMVNFSSFISELNEY

Q338B0 Heat stress transcription factor A-2c2.4e-0639.71Show/hide
Query:  GVDKADPPAFLTKMFQMAEDPVTVSIVSWSRARERGSVSEFFHVVDARFLATWSMVNFSSFISELNEY
        G+ +  PP FLTK + + EDP T  +VSWSRA     V +     D      +   NFSSF+ +LN Y
Subjt:  GVDKADPPAFLTKMFQMAEDPVTVSIVSWSRARERGSVSEFFHVVDARFLATWSMVNFSSFISELNEY

Q6F388 Heat stress transcription factor A-2e1.7e-0438.03Show/hide
Query:  GVDKADPPAFLTKMFQMAEDPVTVSIVSWSRARERGSVSE---FFHVVDARFLATWSMVNFSSFISELNEY
        G+    PP FLTK + M +DP T ++VSWS       V +   F +V+  R+   +   NFSSF+ +LN Y
Subjt:  GVDKADPPAFLTKMFQMAEDPVTVSIVSWSRARERGSVSE---FFHVVDARFLATWSMVNFSSFISELNEY

Q8H7Y6 Heat stress transcription factor A-2d1.2e-0543.48Show/hide
Query:  GVDKADPPAFLTKMFQMAEDPVTVSIVSWSRARERGSVSEFFHVVDARFLAT-WSMVNFSSFISELNEY
        G+ +  PP FLTK F +  DP T  +VSW RA     V +  HV  A FL   +   NFSSF+ +LN Y
Subjt:  GVDKADPPAFLTKMFQMAEDPVTVSIVSWSRARERGSVSEFFHVVDARFLAT-WSMVNFSSFISELNEY

Q9SV12 Heat stress transcription factor A-7a4.5e-0539.71Show/hide
Query:  GVDKADPPAFLTKMFQMAEDPVTVSIVSWSRARERGSVSEFFHVVDARFLATWSMVNFSSFISELNEY
        G+ +  PP FLTK F+M +DP T  IVSW+R      V +            +   NFSSFI +LN Y
Subjt:  GVDKADPPAFLTKMFQMAEDPVTVSIVSWSRARERGSVSEFFHVVDARFLATWSMVNFSSFISELNEY

Arabidopsis top hitse value%identityAlignment
AT2G26150.1 heat shock transcription factor A27.6e-0839.71Show/hide
Query:  GVDKADPPAFLTKMFQMAEDPVTVSIVSWSRARERGSVSEFFHVVDARFLATWSMVNFSSFISELNEY
        G+++  PP FLTK ++M EDP T ++VSWS  R    V +            +   NFSSFI +LN Y
Subjt:  GVDKADPPAFLTKMFQMAEDPVTVSIVSWSRARERGSVSEFFHVVDARFLATWSMVNFSSFISELNEY

AT3G22830.1 heat shock transcription factor A6B1.3e-0436.62Show/hide
Query:  GVDKADPPAFLTKMFQMAEDPVTVSIVSWSRARERGSV---SEFFHVVDARFLATWSMVNFSSFISELNEY
        G+ ++ PP FLTK + + ED  T  +VSWS++     V     F   +  RF   +   NFSSF+ +LN Y
Subjt:  GVDKADPPAFLTKMFQMAEDPVTVSIVSWSRARERGSV---SEFFHVVDARFLATWSMVNFSSFISELNEY

AT3G51910.1 heat shock transcription factor A7A3.2e-0639.71Show/hide
Query:  GVDKADPPAFLTKMFQMAEDPVTVSIVSWSRARERGSVSEFFHVVDARFLATWSMVNFSSFISELNEY
        G+ +  PP FLTK F+M +DP T  IVSW+R      V +            +   NFSSFI +LN Y
Subjt:  GVDKADPPAFLTKMFQMAEDPVTVSIVSWSRARERGSVSEFFHVVDARFLATWSMVNFSSFISELNEY

AT3G63350.1 winged-helix DNA-binding transcription factor family protein1.6e-0544.59Show/hide
Query:  GVDKADPPAFLTKMFQMAEDPVTVSIVSWSRARERGSVSEFFHVVDAR-FLAT-----WSMVNFSSFISELNEY
        G+ +A P  FLTK F+M  DP T  IVSW+    RG +S  F V D   F AT     +   NFSSF+ +LN Y
Subjt:  GVDKADPPAFLTKMFQMAEDPVTVSIVSWSRARERGSVSEFFHVVDAR-FLAT-----WSMVNFSSFISELNEY

AT4G18880.1 heat shock transcription factor A4A3.5e-0540.85Show/hide
Query:  GVDKADPPAFLTKMFQMAEDPVTVSIVSWSRARERGSV---SEFFHVVDARFLATWSMVNFSSFISELNEY
        GV  +  P FLTK ++M +D  + SIVSWS++ +   V    EF   +  RF   +   NFSSFI +LN Y
Subjt:  GVDKADPPAFLTKMFQMAEDPVTVSIVSWSRARERGSV---SEFFHVVDARFLATWSMVNFSSFISELNEY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGAGTAGATAAGGCGGATCCGCCTGCATTTCTCACGAAGATGTTTCAGATGGCGGAAGATCCGGTCACGGTCTCCATTGTTTCGTGGAGCAGAGCGCGCGAACGCGGTTC
TGTTTCGGAATTCTTTCACGTTGTCGACGCTCGCTTCCTCGCTACTTGGAGCATGGTAAATTTCTCCAGCTTCATTAGTGAACTGAATGAATAC
mRNA sequenceShow/hide mRNA sequence
GGAGTAGATAAGGCGGATCCGCCTGCATTTCTCACGAAGATGTTTCAGATGGCGGAAGATCCGGTCACGGTCTCCATTGTTTCGTGGAGCAGAGCGCGCGAACGCGGTTC
TGTTTCGGAATTCTTTCACGTTGTCGACGCTCGCTTCCTCGCTACTTGGAGCATGGTAAATTTCTCCAGCTTCATTAGTGAACTGAATGAATAC
Protein sequenceShow/hide protein sequence
GVDKADPPAFLTKMFQMAEDPVTVSIVSWSRARERGSVSEFFHVVDARFLATWSMVNFSSFISELNEY