; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS008678 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS008678
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNA-binding protein 1-like
Genome locationscaffold4:3028833..3029513
RNA-Seq ExpressionMS008678
SyntenyMS008678
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022136959.1 RNA-binding protein 1-like [Momordica charantia]4.6e-12899.12Show/hide
Query:  MNKSSNRMESNNDQSRGKKIFVGGLPSDLTENEFKNYFEKFGQITDVVVMQDSVTNRPRGFGFITFDSVESVNYVLQNNFHELNGRRVEVKRAVPKNRNC
        MNKSSNRMESNNDQSRGKKIFVGGLPSDLTENEFK+YFEKFGQITDVVVMQDSVTNRPRGFGFITFDSVESVNYVLQNNFHELNGRRVEVKRAVPKNRNC
Subjt:  MNKSSNRMESNNDQSRGKKIFVGGLPSDLTENEFKNYFEKFGQITDVVVMQDSVTNRPRGFGFITFDSVESVNYVLQNNFHELNGRRVEVKRAVPKNRNC

Query:  NSSNPQRGKSPLSPHVPLYYPHFSSGPVVYPGYAPFPHYYGSSLYGSWHYNGLYGTGHEAPPLPLGSAWYAPNVFGDGMFPSPYRNSVIHPVYSSKGGRL
        NSSNPQRGKSPLSPHVPLYYPHFSSGPVVYPGYAPFPHYYGSSLYGSWHYNGLYGTGHEAPPLPLGSAWYAPNVFGDGMFPSPY NSVIHPVYSSKGGRL
Subjt:  NSSNPQRGKSPLSPHVPLYYPHFSSGPVVYPGYAPFPHYYGSSLYGSWHYNGLYGTGHEAPPLPLGSAWYAPNVFGDGMFPSPYRNSVIHPVYSSKGGRL

Query:  LDPMAGNGRRNGNMSADAVPFQLNNRA
        LDPMAGNGRRNGNMSADAVPFQLNNRA
Subjt:  LDPMAGNGRRNGNMSADAVPFQLNNRA

XP_022940975.1 RNA-binding protein 1-like [Cucurbita moschata]8.0e-5655.98Show/hide
Query:  DQSRGKKIFVGGLPSDLTENEFKNYFEKFGQITDVVVMQDSVTNRPRGFGFITFDSVESVNYVLQNNFHELNGRRVEVKRAVPKNRNCNSSNPQRGKSPL
        DQ RG+KIFVGGL ++LTE++FKNYFEKFG++TDVVVM+DSVT RPRGFGFITFDSV+SV+ VLQNNFHELNGRRVEVKRA+PK  N N  +    KSPL
Subjt:  DQSRGKKIFVGGLPSDLTENEFKNYFEKFGQITDVVVMQDSVTNRPRGFGFITFDSVESVNYVLQNNFHELNGRRVEVKRAVPKNRNCNSSNPQRGKSPL

Query:  S-PHVPLYYPHFSSGPVVYPGYAPFPHY------YGSSLYGSWHYNGLYGTGHEAPPLPLGSAWYAPNVFGDGMFPSPYRNSVIHPVYSSKGGRLLDPMA
        S  +V   YP++S G  VYPG+ PFP Y      YGS  YG+W ++  +G      P+   +AWYAPN F  GMFP P++NS+++P YSS G  L  P+A
Subjt:  S-PHVPLYYPHFSSGPVVYPGYAPFPHY------YGSSLYGSWHYNGLYGTGHEAPPLPLGSAWYAPNVFGDGMFPSPYRNSVIHPVYSSKGGRLLDPMA

Query:  G------------NGRRNGNMSADAVPFQLNNRA
        G              R   NMSADAVPF   ++A
Subjt:  G------------NGRRNGNMSADAVPFQLNNRA

XP_022982410.1 RNA-binding protein 1-like [Cucurbita maxima]1.1e-5555.14Show/hide
Query:  SSNRMESNNDQSRGKKIFVGGLPSDLTENEFKNYFEKFGQITDVVVMQDSVTNRPRGFGFITFDSVESVNYVLQNNFHELNGRRVEVKRAVPKNRNCNSS
        +  RME   DQ RG+KIFVGGL ++LTE++FKNYFEKFG++TDVVVM+DSVT RPRGFGFITFDSV+SV+ VLQNNFHELNGRRVEVKRA+PK  N N  
Subjt:  SSNRMESNNDQSRGKKIFVGGLPSDLTENEFKNYFEKFGQITDVVVMQDSVTNRPRGFGFITFDSVESVNYVLQNNFHELNGRRVEVKRAVPKNRNCNSS

Query:  NPQRGKSPLS-PHVPLYYPHFSSGPVVYPGYAPFPHY------YGSSLYGSWHYNGLYGTGHEAPPLPLGSAWYAPNVFGDGMFPSPYRNSVIHPVYSSK
        +    KSPLS  +V   YP++S G  VYPG+ PFP Y      YGS  YG+W ++  +G      P+   +AWY PN F  GMFP P++NS+++P YSS 
Subjt:  NPQRGKSPLS-PHVPLYYPHFSSGPVVYPGYAPFPHY------YGSSLYGSWHYNGLYGTGHEAPPLPLGSAWYAPNVFGDGMFPSPYRNSVIHPVYSSK

Query:  GGRLLDPMAG------------NGRRNGNMSADAVPFQLNNRA
        G  L  P+AG              R   NMSADAVPF   +RA
Subjt:  GGRLLDPMAG------------NGRRNGNMSADAVPFQLNNRA

XP_023524364.1 RNA-binding protein 1-like [Cucurbita pepo subsp. pepo]1.6e-5655.97Show/hide
Query:  SSNRMESNNDQSRGKKIFVGGLPSDLTENEFKNYFEKFGQITDVVVMQDSVTNRPRGFGFITFDSVESVNYVLQNNFHELNGRRVEVKRAVPKNRNCNSS
        +  RME   DQ RG+KIFVGGL ++LTE++FKNYFEKFG++TDVVVM+DSVT RPRGFGFITFDSV+SV+ VLQNNFHELNGRRVEVKRA+PK  N N  
Subjt:  SSNRMESNNDQSRGKKIFVGGLPSDLTENEFKNYFEKFGQITDVVVMQDSVTNRPRGFGFITFDSVESVNYVLQNNFHELNGRRVEVKRAVPKNRNCNSS

Query:  NPQRGKSPLS-PHVPLYYPHFSSGPVVYPGYAPFPHY------YGSSLYGSWHYNGLYGTGHEAPPLPLGSAWYAPNVFGDGMFPSPYRNSVIHPVYSSK
        +    KSPLS  +V   YP++S G  VYPG+ PFP Y      YGS  YG+W ++  +G      P+   +AWYAPN F  GMFP P++NS+++P YSS 
Subjt:  NPQRGKSPLS-PHVPLYYPHFSSGPVVYPGYAPFPHY------YGSSLYGSWHYNGLYGTGHEAPPLPLGSAWYAPNVFGDGMFPSPYRNSVIHPVYSSK

Query:  GGRLLDPMAG----NGRR--------NGNMSADAVPFQLNNRA
        G  L  P+AG    +GRR          NMSADAVPF   ++A
Subjt:  GGRLLDPMAG----NGRR--------NGNMSADAVPFQLNNRA

XP_038898856.1 RNA-binding protein 1-like [Benincasa hispida]1.2e-6458.04Show/hide
Query:  MNKSSNRMESNNDQSRGKKIFVGGLPSDLTENEFKNYFEKFGQITDVVVMQDSVTNRPRGFGFITFDSVESVNYVLQNNFHELNGRRVEVKRAVPKNRNC
        M  S+ RME+NNDQ RG+KIFVGGL ++LTE+EFKNYFEKFG+ITDVVVM DSVTNRPRGFGFITF+SVESV+ VLQ+NFHELNGRRVEVKRA+PK  N 
Subjt:  MNKSSNRMESNNDQSRGKKIFVGGLPSDLTENEFKNYFEKFGQITDVVVMQDSVTNRPRGFGFITFDSVESVNYVLQNNFHELNGRRVEVKRAVPKNRNC

Query:  N-----SSNPQRGKSPL---SPHVPLYYPHFSSGPVVYPGYAPFPHY-------YGSSLYGSWHYNGLYGTGHEAPPLPLGSAWYAPNVFGDGMFPSPYR
        N     ++  Q GKSPL   + +VP  YP++ S   VYPG+ PFPHY       YGS LYG+W          E         WY PN FG G+FP PYR
Subjt:  N-----SSNPQRGKSPL---SPHVPLYYPHFSSGPVVYPGYAPFPHY-------YGSSLYGSWHYNGLYGTGHEAPPLPLGSAWYAPNVFGDGMFPSPYR

Query:  NSVIHPVYSSKGGRLLDPMAGNG----RRNGN----------MSADAVPFQLNNR
        NS+I P+YSSKG  L D   GNG    RRNG           MSADAVPFQ+ +R
Subjt:  NSVIHPVYSSKGGRLLDPMAGNG----RRNGN----------MSADAVPFQLNNR

TrEMBL top hitse value%identityAlignment
A0A0A0L563 RRM domain-containing protein2.4e-5350.83Show/hide
Query:  SSNRMESNNDQSRGKKIFVGGLPSDLTENEFKNYFEKFGQITDVVVMQDSVTNRPRGFGFITFDSVESVNYVLQNNFHELNGRRVEVKRAVPKNRNCNS-
        S+ RM++NNDQ RG+KIFVGGL ++LTE EF++YFE FGQITDVVVM DSVTNRPRGFGF+TF+S+ESV+ VLQ NFHELNGRRVEVKRA+PK  N N  
Subjt:  SSNRMESNNDQSRGKKIFVGGLPSDLTENEFKNYFEKFGQITDVVVMQDSVTNRPRGFGFITFDSVESVNYVLQNNFHELNGRRVEVKRAVPKNRNCNS-

Query:  --SNPQRGKSPL---SPHVPLYYPHFSSGPVVYPGYAPFPHY------YGSSLYGSWHYNGLYGTGHEAPPLPLGSAWYAPNVFGDGMFPSPYRNSVIHP
           N +  KSPL   + +VP  YP++ SG  +YPG+  FPHY      YGS+ YG+W   G       +  +     W+ PN F  GM P   RNS++HP
Subjt:  --SNPQRGKSPL---SPHVPLYYPHFSSGPVVYPGYAPFPHY------YGSSLYGSWHYNGLYGTGHEAPPLPLGSAWYAPNVFGDGMFPSPYRNSVIHP

Query:  ---VYSSKGGRLLDPMAGNGRRNGN----MSADAVPFQLNNR
           +Y      + +   G  ++N      MSADA PFQ+ +R
Subjt:  ---VYSSKGGRLLDPMAGNGRRNGN----MSADAVPFQLNNR

A0A6A1UXZ2 RNA-binding protein 18.4e-4348.65Show/hide
Query:  SNRMESNNDQSRGKKIFVGGLPSDLTENEFKNYFEKFGQITDVVVMQDSVTNRPRGFGFITFDSVESVNYVLQNNFHELNGRRVEVKRAVPKNRNCNSSN
        S+  ++ ++Q R KKIFVGGL + LTE EFKNYFE+FG +TDVVVM DS T RPRGFGF+TFDS ESV  V+ N+FHELNGR VEVKRAVPK  N +S  
Subjt:  SNRMESNNDQSRGKKIFVGGLPSDLTENEFKNYFEKFGQITDVVVMQDSVTNRPRGFGFITFDSVESVNYVLQNNFHELNGRRVEVKRAVPKNRNCNSSN

Query:  PQRGKSPLSPHVPLYYPHFSSGPVVYPGYAPFPHY-------YGSSLYGSWHY-NGLYGTGHEAPPLPLGSAWYAPNVFGDGMFPSPYRNSVIHPVYSSK
            +       P  YP +S G  + PGYAPF  +       YG S+YG W+   G    G    PLPL SAWY P   G   F  P+ ++ I P YSS 
Subjt:  PQRGKSPLSPHVPLYYPHFSSGPVVYPGYAPFPHY-------YGSSLYGSWHY-NGLYGTGHEAPPLPLGSAWYAPNVFGDGMFPSPYRNSVIHPVYSSK

Query:  GGRLLDPMAGNGRRNGNMSADA
        G  ++D  AG   R G +  ++
Subjt:  GGRLLDPMAGNGRRNGNMSADA

A0A6J1C724 RNA-binding protein 1-like2.2e-12899.12Show/hide
Query:  MNKSSNRMESNNDQSRGKKIFVGGLPSDLTENEFKNYFEKFGQITDVVVMQDSVTNRPRGFGFITFDSVESVNYVLQNNFHELNGRRVEVKRAVPKNRNC
        MNKSSNRMESNNDQSRGKKIFVGGLPSDLTENEFK+YFEKFGQITDVVVMQDSVTNRPRGFGFITFDSVESVNYVLQNNFHELNGRRVEVKRAVPKNRNC
Subjt:  MNKSSNRMESNNDQSRGKKIFVGGLPSDLTENEFKNYFEKFGQITDVVVMQDSVTNRPRGFGFITFDSVESVNYVLQNNFHELNGRRVEVKRAVPKNRNC

Query:  NSSNPQRGKSPLSPHVPLYYPHFSSGPVVYPGYAPFPHYYGSSLYGSWHYNGLYGTGHEAPPLPLGSAWYAPNVFGDGMFPSPYRNSVIHPVYSSKGGRL
        NSSNPQRGKSPLSPHVPLYYPHFSSGPVVYPGYAPFPHYYGSSLYGSWHYNGLYGTGHEAPPLPLGSAWYAPNVFGDGMFPSPY NSVIHPVYSSKGGRL
Subjt:  NSSNPQRGKSPLSPHVPLYYPHFSSGPVVYPGYAPFPHYYGSSLYGSWHYNGLYGTGHEAPPLPLGSAWYAPNVFGDGMFPSPYRNSVIHPVYSSKGGRL

Query:  LDPMAGNGRRNGNMSADAVPFQLNNRA
        LDPMAGNGRRNGNMSADAVPFQLNNRA
Subjt:  LDPMAGNGRRNGNMSADAVPFQLNNRA

A0A6J1FS87 RNA-binding protein 1-like3.9e-5655.98Show/hide
Query:  DQSRGKKIFVGGLPSDLTENEFKNYFEKFGQITDVVVMQDSVTNRPRGFGFITFDSVESVNYVLQNNFHELNGRRVEVKRAVPKNRNCNSSNPQRGKSPL
        DQ RG+KIFVGGL ++LTE++FKNYFEKFG++TDVVVM+DSVT RPRGFGFITFDSV+SV+ VLQNNFHELNGRRVEVKRA+PK  N N  +    KSPL
Subjt:  DQSRGKKIFVGGLPSDLTENEFKNYFEKFGQITDVVVMQDSVTNRPRGFGFITFDSVESVNYVLQNNFHELNGRRVEVKRAVPKNRNCNSSNPQRGKSPL

Query:  S-PHVPLYYPHFSSGPVVYPGYAPFPHY------YGSSLYGSWHYNGLYGTGHEAPPLPLGSAWYAPNVFGDGMFPSPYRNSVIHPVYSSKGGRLLDPMA
        S  +V   YP++S G  VYPG+ PFP Y      YGS  YG+W ++  +G      P+   +AWYAPN F  GMFP P++NS+++P YSS G  L  P+A
Subjt:  S-PHVPLYYPHFSSGPVVYPGYAPFPHY------YGSSLYGSWHYNGLYGTGHEAPPLPLGSAWYAPNVFGDGMFPSPYRNSVIHPVYSSKGGRLLDPMA

Query:  G------------NGRRNGNMSADAVPFQLNNRA
        G              R   NMSADAVPF   ++A
Subjt:  G------------NGRRNGNMSADAVPFQLNNRA

A0A6J1J2K5 RNA-binding protein 1-like5.1e-5655.14Show/hide
Query:  SSNRMESNNDQSRGKKIFVGGLPSDLTENEFKNYFEKFGQITDVVVMQDSVTNRPRGFGFITFDSVESVNYVLQNNFHELNGRRVEVKRAVPKNRNCNSS
        +  RME   DQ RG+KIFVGGL ++LTE++FKNYFEKFG++TDVVVM+DSVT RPRGFGFITFDSV+SV+ VLQNNFHELNGRRVEVKRA+PK  N N  
Subjt:  SSNRMESNNDQSRGKKIFVGGLPSDLTENEFKNYFEKFGQITDVVVMQDSVTNRPRGFGFITFDSVESVNYVLQNNFHELNGRRVEVKRAVPKNRNCNSS

Query:  NPQRGKSPLS-PHVPLYYPHFSSGPVVYPGYAPFPHY------YGSSLYGSWHYNGLYGTGHEAPPLPLGSAWYAPNVFGDGMFPSPYRNSVIHPVYSSK
        +    KSPLS  +V   YP++S G  VYPG+ PFP Y      YGS  YG+W ++  +G      P+   +AWY PN F  GMFP P++NS+++P YSS 
Subjt:  NPQRGKSPLS-PHVPLYYPHFSSGPVVYPGYAPFPHY------YGSSLYGSWHYNGLYGTGHEAPPLPLGSAWYAPNVFGDGMFPSPYRNSVIHPVYSSK

Query:  GGRLLDPMAG------------NGRRNGNMSADAVPFQLNNRA
        G  L  P+AG              R   NMSADAVPF   +RA
Subjt:  GGRLLDPMAG------------NGRRNGNMSADAVPFQLNNRA

SwissProt top hitse value%identityAlignment
Q8W034 Heterogeneous nuclear ribonucleoprotein 11.0e-2439.66Show/hide
Query:  NKSSNRMESNNDQSRGKKIFVGGLPSDLTENEFKNYFEKFGQITDVVVMQDSVTNRPRGFGFITFDSVESVNYVLQNNFHELNGRRVEVKRAVPKNRNCN
        N +++R    +  ++ KKIFVGGLP  LT+ EF+ YFE +G +TDV +M D  TNRPRGFGF++FDS ++V+ VL   FH+L+G++VEVKRA+PK+    
Subjt:  NKSSNRMESNNDQSRGKKIFVGGLPSDLTENEFKNYFEKFGQITDVVVMQDSVTNRPRGFGFITFDSVESVNYVLQNNFHELNGRRVEVKRAVPKNRNCN

Query:  SSNPQRGKSPLSPHVPLYYPHFSSGPVVYPGYAPFPHY------------YGSSLYGSWHYNGLYGTGHEAPPLPLGSA
         +NP  G   +       Y  +      Y G      +            YGSS YG+ + NG  G G+ A     GSA
Subjt:  SSNPQRGKSPLSPHVPLYYPHFSSGPVVYPGYAPFPHY------------YGSSLYGSWHYNGLYGTGHEAPPLPLGSA

Q96EP5 DAZ-associated protein 11.8e-1837.18Show/hide
Query:  NDQSRGKKIFVGGLPSDLTENEFKNYFEKFGQITDVVVMQDSVTNRPRGFGFITFDSVESVNYVLQNNFHELNGRRVEVKRAVPKNRNCNSSNPQRGKSP
        +D S+  KIFVGG+P +  E E + YF+KFG +T+VV++ D+   RPRGFGFITF+  +SV+  +  +FH++ G++VEVKRA P++    +   Q G S 
Subjt:  NDQSRGKKIFVGGLPSDLTENEFKNYFEKFGQITDVVVMQDSVTNRPRGFGFITFDSVESVNYVLQNNFHELNGRRVEVKRAVPKNRNCNSSNPQRGKSP

Query:  LSPHVPLYYPHFSSGPVVYPGYAPFPHYYGSSLYGSWHYNGLYGTGHEAPPLPLGS
            V    P+ ++G   + G  P     G    G W   G    G+  PP   G+
Subjt:  LSPHVPLYYPHFSSGPVVYPGYAPFPHYYGSSLYGSWHYNGLYGTGHEAPPLPLGS

Q98SJ2 DAZ-associated protein 12.4e-1834.97Show/hide
Query:  ESNNDQSRGKKIFVGGLPSDLTENEFKNYFEKFGQITDVVVMQDSVTNRPRGFGFITFDSVESVNYVLQNNFHELNGRRVEVKRAVPKNRNCNSSNPQRG
        E   + SR  KIFVGG+P +  E E K YF +FG +T+VV++ D+   RPRGFGFITF+  +SV+  +  +FH++ G++VEVKRA P++    +  P  G
Subjt:  ESNNDQSRGKKIFVGGLPSDLTENEFKNYFEKFGQITDVVVMQDSVTNRPRGFGFITFDSVESVNYVLQNNFHELNGRRVEVKRAVPKNRNCNSSNPQRG

Query:  KSPLSPHVPLYYPHFSSG--PVVYPGYAPFPHYYGSSLYGSWHYNGL----YG--TGHEAPPLPLGSAWYAPNVFGDGMFPSP
         +           +  +G  P  + GY+P          G W   G     YG   G   PP P   A +  +    G FP P
Subjt:  KSPLSPHVPLYYPHFSSG--PVVYPGYAPFPHYYGSSLYGSWHYNGL----YG--TGHEAPPLPLGSAWYAPNVFGDGMFPSP

Q9C652 RNA-binding protein 11.5e-2846.24Show/hide
Query:  MNKSSNRMESNNDQSRGKKIFVGGLPSDLTENEFKNYFEKFGQITDVVVMQDSVTNRPRGFGFITFDSVESVNYVLQNNFHELNGRRVEVKRAVPK----
        MN     M SN   SR KKIFVGGL S+ TE EFK+YFE+FG+ TDVVVM D VTNRPRGFGF+T+DS +SV  V+Q+NFHEL+ +RVEVKRA+PK    
Subjt:  MNKSSNRMESNNDQSRGKKIFVGGLPSDLTENEFKNYFEKFGQITDVVVMQDSVTNRPRGFGFITFDSVESVNYVLQNNFHELNGRRVEVKRAVPK----

Query:  --NRNCNSSNPQRGKSPLSPHVP--------LYYP------HFSSGPVVYP-GYAPFPHYYGSSLYGSWHYNGLYGTG-HEAPPLP
          N N  +  P       +P+VP        L +P      H +   V YP GY     +       SW+   +  TG + APP P
Subjt:  --NRNCNSSNPQRGKSPLSPHVP--------LYYP------HFSSGPVVYP-GYAPFPHYYGSSLYGSWHYNGLYGTG-HEAPPLP

Q9JII5 DAZ-associated protein 11.8e-1837.82Show/hide
Query:  NDQSRGKKIFVGGLPSDLTENEFKNYFEKFGQITDVVVMQDSVTNRPRGFGFITFDSVESVNYVLQNNFHELNGRRVEVKRAVPKNRNCNSSNPQRGKSP
        +D S+  KIFVGG+P +  E E + YF+KFG +T+VV++ D+   RPRGFGFITF+  +SV+  +  +FH++ G++VEVKRA P++   N +  Q G S 
Subjt:  NDQSRGKKIFVGGLPSDLTENEFKNYFEKFGQITDVVVMQDSVTNRPRGFGFITFDSVESVNYVLQNNFHELNGRRVEVKRAVPKNRNCNSSNPQRGKSP

Query:  LSPHVPLYYPHFSSGPVVYPGYAPFPHYYGSSLYGSWHYNGLYGTGHEAPPLPLGS
            V    P  ++G   + G  P     G    G W   G    G+  PP   G+
Subjt:  LSPHVPLYYPHFSSGPVVYPGYAPFPHYYGSSLYGSWHYNGLYGTGHEAPPLPLGS

Arabidopsis top hitse value%identityAlignment
AT1G58470.1 RNA-binding protein 11.1e-2946.24Show/hide
Query:  MNKSSNRMESNNDQSRGKKIFVGGLPSDLTENEFKNYFEKFGQITDVVVMQDSVTNRPRGFGFITFDSVESVNYVLQNNFHELNGRRVEVKRAVPK----
        MN     M SN   SR KKIFVGGL S+ TE EFK+YFE+FG+ TDVVVM D VTNRPRGFGF+T+DS +SV  V+Q+NFHEL+ +RVEVKRA+PK    
Subjt:  MNKSSNRMESNNDQSRGKKIFVGGLPSDLTENEFKNYFEKFGQITDVVVMQDSVTNRPRGFGFITFDSVESVNYVLQNNFHELNGRRVEVKRAVPK----

Query:  --NRNCNSSNPQRGKSPLSPHVP--------LYYP------HFSSGPVVYP-GYAPFPHYYGSSLYGSWHYNGLYGTG-HEAPPLP
          N N  +  P       +P+VP        L +P      H +   V YP GY     +       SW+   +  TG + APP P
Subjt:  --NRNCNSSNPQRGKSPLSPHVP--------LYYP------HFSSGPVVYP-GYAPFPHYYGSSLYGSWHYNGLYGTG-HEAPPLP

AT5G55550.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.2e-2848.17Show/hide
Query:  RGKKIFVGGLPSDLTENEFKNYFEKFGQITDVVVMQDSVTNRPRGFGFITFDSVESVNYVLQNNFHELNGRRVEVKRAVPKNRNCNSSNPQRGKSPLSPH
        R KKIFVGGLPS +TE EFKNYF++FG I DVVVM D  T RPRGFGFITFDS ++V+ VL   FHELNG+ VEVKRAVPK      S     +SPL+  
Subjt:  RGKKIFVGGLPSDLTENEFKNYFEKFGQITDVVVMQDSVTNRPRGFGFITFDSVESVNYVLQNNFHELNGRRVEVKRAVPKNRNCNSSNPQRGKSPLSPH

Query:  VPLYYPHFSSGPVVYPGYAPFPHYYGSSLYGSWHYNGLYGTGHEAPPLPLGSAWYAPNVFGDGM
        V     ++  G        P   Y+ +   G   YN L   G    P+ +GS   A + FG G+
Subjt:  VPLYYPHFSSGPVVYPGYAPFPHYYGSSLYGSWHYNGLYGTGHEAPPLPLGSAWYAPNVFGDGM

AT5G55550.2 RNA-binding (RRM/RBD/RNP motifs) family protein1.2e-2848.17Show/hide
Query:  RGKKIFVGGLPSDLTENEFKNYFEKFGQITDVVVMQDSVTNRPRGFGFITFDSVESVNYVLQNNFHELNGRRVEVKRAVPKNRNCNSSNPQRGKSPLSPH
        R KKIFVGGLPS +TE EFKNYF++FG I DVVVM D  T RPRGFGFITFDS ++V+ VL   FHELNG+ VEVKRAVPK      S     +SPL+  
Subjt:  RGKKIFVGGLPSDLTENEFKNYFEKFGQITDVVVMQDSVTNRPRGFGFITFDSVESVNYVLQNNFHELNGRRVEVKRAVPKNRNCNSSNPQRGKSPLSPH

Query:  VPLYYPHFSSGPVVYPGYAPFPHYYGSSLYGSWHYNGLYGTGHEAPPLPLGSAWYAPNVFGDGM
        V     ++  G        P   Y+ +   G   YN L   G    P+ +GS   A + FG G+
Subjt:  VPLYYPHFSSGPVVYPGYAPFPHYYGSSLYGSWHYNGLYGTGHEAPPLPLGSAWYAPNVFGDGM

AT5G55550.3 RNA-binding (RRM/RBD/RNP motifs) family protein1.2e-2848.17Show/hide
Query:  RGKKIFVGGLPSDLTENEFKNYFEKFGQITDVVVMQDSVTNRPRGFGFITFDSVESVNYVLQNNFHELNGRRVEVKRAVPKNRNCNSSNPQRGKSPLSPH
        R KKIFVGGLPS +TE EFKNYF++FG I DVVVM D  T RPRGFGFITFDS ++V+ VL   FHELNG+ VEVKRAVPK      S     +SPL+  
Subjt:  RGKKIFVGGLPSDLTENEFKNYFEKFGQITDVVVMQDSVTNRPRGFGFITFDSVESVNYVLQNNFHELNGRRVEVKRAVPKNRNCNSSNPQRGKSPLSPH

Query:  VPLYYPHFSSGPVVYPGYAPFPHYYGSSLYGSWHYNGLYGTGHEAPPLPLGSAWYAPNVFGDGM
        V     ++  G        P   Y+ +   G   YN L   G    P+ +GS   A + FG G+
Subjt:  VPLYYPHFSSGPVVYPGYAPFPHYYGSSLYGSWHYNGLYGTGHEAPPLPLGSAWYAPNVFGDGM

AT5G55550.4 RNA-binding (RRM/RBD/RNP motifs) family protein1.2e-2848.17Show/hide
Query:  RGKKIFVGGLPSDLTENEFKNYFEKFGQITDVVVMQDSVTNRPRGFGFITFDSVESVNYVLQNNFHELNGRRVEVKRAVPKNRNCNSSNPQRGKSPLSPH
        R KKIFVGGLPS +TE EFKNYF++FG I DVVVM D  T RPRGFGFITFDS ++V+ VL   FHELNG+ VEVKRAVPK      S     +SPL+  
Subjt:  RGKKIFVGGLPSDLTENEFKNYFEKFGQITDVVVMQDSVTNRPRGFGFITFDSVESVNYVLQNNFHELNGRRVEVKRAVPKNRNCNSSNPQRGKSPLSPH

Query:  VPLYYPHFSSGPVVYPGYAPFPHYYGSSLYGSWHYNGLYGTGHEAPPLPLGSAWYAPNVFGDGM
        V     ++  G        P   Y+ +   G   YN L   G    P+ +GS   A + FG G+
Subjt:  VPLYYPHFSSGPVVYPGYAPFPHYYGSSLYGSWHYNGLYGTGHEAPPLPLGSAWYAPNVFGDGM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATAAGAGTAGTAATAGAATGGAAAGCAACAATGATCAGTCCAGAGGCAAAAAGATTTTTGTAGGGGGTTTACCATCTGATTTAACTGAGAATGAGTTCAAAAACTA
CTTCGAAAAGTTTGGTCAGATAACAGATGTAGTTGTGATGCAAGATAGTGTAACAAACCGTCCTAGAGGATTTGGGTTCATCACATTTGATTCAGTGGAATCTGTAAACT
ATGTTCTGCAGAACAACTTCCATGAGTTGAATGGTAGGCGTGTGGAGGTGAAGAGAGCTGTCCCAAAGAATCGAAACTGCAACTCCTCCAACCCACAGAGAGGAAAAAGC
CCTCTAAGCCCTCATGTTCCTTTGTATTATCCACATTTTAGTTCTGGACCTGTAGTTTATCCTGGTTATGCACCATTTCCACACTATTATGGCTCAAGCCTCTATGGGAG
CTGGCACTACAATGGCTTATATGGCACCGGGCATGAGGCTCCTCCCTTGCCCTTGGGGAGTGCTTGGTATGCCCCAAATGTTTTTGGTGATGGTATGTTTCCTTCGCCCT
ACAGAAATTCTGTAATTCATCCTGTATATTCAAGCAAAGGAGGTAGGCTCTTAGATCCAATGGCTGGAAATGGAAGAAGAAATGGAAATATGTCGGCTGATGCTGTGCCA
TTTCAGCTGAACAATAGAGCT
mRNA sequenceShow/hide mRNA sequence
ATGAATAAGAGTAGTAATAGAATGGAAAGCAACAATGATCAGTCCAGAGGCAAAAAGATTTTTGTAGGGGGTTTACCATCTGATTTAACTGAGAATGAGTTCAAAAACTA
CTTCGAAAAGTTTGGTCAGATAACAGATGTAGTTGTGATGCAAGATAGTGTAACAAACCGTCCTAGAGGATTTGGGTTCATCACATTTGATTCAGTGGAATCTGTAAACT
ATGTTCTGCAGAACAACTTCCATGAGTTGAATGGTAGGCGTGTGGAGGTGAAGAGAGCTGTCCCAAAGAATCGAAACTGCAACTCCTCCAACCCACAGAGAGGAAAAAGC
CCTCTAAGCCCTCATGTTCCTTTGTATTATCCACATTTTAGTTCTGGACCTGTAGTTTATCCTGGTTATGCACCATTTCCACACTATTATGGCTCAAGCCTCTATGGGAG
CTGGCACTACAATGGCTTATATGGCACCGGGCATGAGGCTCCTCCCTTGCCCTTGGGGAGTGCTTGGTATGCCCCAAATGTTTTTGGTGATGGTATGTTTCCTTCGCCCT
ACAGAAATTCTGTAATTCATCCTGTATATTCAAGCAAAGGAGGTAGGCTCTTAGATCCAATGGCTGGAAATGGAAGAAGAAATGGAAATATGTCGGCTGATGCTGTGCCA
TTTCAGCTGAACAATAGAGCT
Protein sequenceShow/hide protein sequence
MNKSSNRMESNNDQSRGKKIFVGGLPSDLTENEFKNYFEKFGQITDVVVMQDSVTNRPRGFGFITFDSVESVNYVLQNNFHELNGRRVEVKRAVPKNRNCNSSNPQRGKS
PLSPHVPLYYPHFSSGPVVYPGYAPFPHYYGSSLYGSWHYNGLYGTGHEAPPLPLGSAWYAPNVFGDGMFPSPYRNSVIHPVYSSKGGRLLDPMAGNGRRNGNMSADAVP
FQLNNRA