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MS008680 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS008680
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPre-mRNA-processing protein 40A isoform X1
Genome locationscaffold4:3033824..3034213
RNA-Seq ExpressionMS008680
SyntenyMS008680
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064468.1 hypothetical protein E6C27_scaffold255G001830 [Cucumis melo var. makuwa]8.5e-3463.85Show/hide
Query:  MGSINKTHSRGRVAFSWEKKPGVCKSAEVAPPHRRRD--GDVLMPKQLRPPPCSSARKGNRKLQKDEGRAEDPFLAAYRECTGDQSSNNYKSHKNLSGFG
        M   NKTHSRGRVAFSWE +PGVCK+A VAPP+R  D   D  + K+L+PPPC+ ARKGN+KL + +G AEDPFLAAYRECT +    N K  KN  GFG
Subjt:  MGSINKTHSRGRVAFSWEKKPGVCKSAEVAPPHRRRD--GDVLMPKQLRPPPCSSARKGNRKLQKDEGRAEDPFLAAYRECTGDQSSNNYKSHKNLSGFG

Query:  GWIKM--FGTLSCKHFTAVRDDSLISSSSS
        GW+ M  FG LSCK  TAVRDDSLISS  S
Subjt:  GWIKM--FGTLSCKHFTAVRDDSLISSSSS

KAE8649893.1 hypothetical protein Csa_012691 [Cucumis sativus]1.4e-2373.17Show/hide
Query:  MGSINKTHSRGRVAFSWEKKPGVCKSAEVAPPHRRRDGDVLMPKQLRPPPCSSARKGNRKLQKDEGRAEDPFLAAYRECTGD
        M   NKTHSRGRVAFSWE KPGVCK+A VAPPH   DGD  + KQL+PPPC+ ARKGN+KLQKD G AEDPFLAAY+ECT +
Subjt:  MGSINKTHSRGRVAFSWEKKPGVCKSAEVAPPHRRRDGDVLMPKQLRPPPCSSARKGNRKLQKDEGRAEDPFLAAYRECTGD

KAG6591440.1 Pre-mRNA-processing protein 40A, partial [Cucurbita argyrosperma subsp. sororia]4.8e-2161.29Show/hide
Query:  NKTHSRGRVAFSWEKKPGVCKSAEVAPPHRRRDGDVLMPKQLRPPPCSSARKGNRKLQKDEGRAEDPFLAAYRECTGDQSSNNYKSHKNLSGF
        N+ HSRGRVAFSWE KPG CK+A VAPP  R   D L  K+LRPPPC+SARKG +K+QKD G  EDPFLAA+REC+  +   N K  +N +GF
Subjt:  NKTHSRGRVAFSWEKKPGVCKSAEVAPPHRRRDGDVLMPKQLRPPPCSSARKGNRKLQKDEGRAEDPFLAAYRECTGDQSSNNYKSHKNLSGF

KAG7024319.1 hypothetical protein SDJN02_13133, partial [Cucurbita argyrosperma subsp. argyrosperma]4.8e-2161.29Show/hide
Query:  NKTHSRGRVAFSWEKKPGVCKSAEVAPPHRRRDGDVLMPKQLRPPPCSSARKGNRKLQKDEGRAEDPFLAAYRECTGDQSSNNYKSHKNLSGF
        N+ HSRGRVAFSWE KPG CK+A VAPP  R   D L  K+LRPPPC+SARKG +K+QKD G  EDPFLAA+REC+  +   N K  +N +GF
Subjt:  NKTHSRGRVAFSWEKKPGVCKSAEVAPPHRRRDGDVLMPKQLRPPPCSSARKGNRKLQKDEGRAEDPFLAAYRECTGDQSSNNYKSHKNLSGF

OAY51045.1 hypothetical protein MANES_05G183500v8 [Manihot esculenta]1.3e-1039.44Show/hide
Query:  KTHSRGRVAFSWEKKPGVCKS--------------------AEVAPPHRRRDGDV---LMPKQLRPPPCSSARKGNRKLQKDEGRAEDPFLAAYRECTGD
        K H +G V FSWEKKPGV K+                     E   P R    D+   L P   +PP  SS+RKG  K Q      EDPFLAAY+ECT  
Subjt:  KTHSRGRVAFSWEKKPGVCKS--------------------AEVAPPHRRRDGDV---LMPKQLRPPPCSSARKGNRKLQKDEGRAEDPFLAAYRECTGD

Query:  QSSNNYKSHKNLSGFGGWIKMFGTLSCKHFTAVRDDSLISSS
         S +N K+   L    G  K   +LSCK+  +VRDD+L+  S
Subjt:  QSSNNYKSHKNLSGFGGWIKMFGTLSCKHFTAVRDDSLISSS

TrEMBL top hitse value%identityAlignment
A0A0A0L2M9 Uncharacterized protein4.4e-3667.19Show/hide
Query:  MGSINKTHSRGRVAFSWEKKPGVCKSAEVAPPHRRRDGDVLMPKQLRPPPCSSARKGNRKLQKDEGRAEDPFLAAYRECTGDQSSNNYKSHKNLSGFGGW
        M   NKTHSRGRVAFSWE KPGVCK+A VAPPH   DGD  + KQL+PPPC+ ARKGN+KLQKD G AEDPFLAAY+ECT +      K  KN SGFGGW
Subjt:  MGSINKTHSRGRVAFSWEKKPGVCKSAEVAPPHRRRDGDVLMPKQLRPPPCSSARKGNRKLQKDEGRAEDPFLAAYRECTGDQSSNNYKSHKNLSGFGGW

Query:  I--KMFGTLSCKHFTAVRDDSLISSSSS
        +    F  LSCK  TAVRDDSLISS  S
Subjt:  I--KMFGTLSCKHFTAVRDDSLISSSSS

A0A1R3HKK6 Uncharacterized protein1.6e-0936.3Show/hide
Query:  KTHSRGRVAFSWEKKPGVCK------------------------SAEVAPPHRRRDGDVLMPK-QLRPPPCSSARKGNRKLQKDEGRAEDPFLAAYRECT
        K HS+G V FSWE KPGVCK                        +A V+  +  +D  +  P    +PP  SS+R+G +K       ++DPFLAAY+ECT
Subjt:  KTHSRGRVAFSWEKKPGVCK------------------------SAEVAPPHRRRDGDVLMPK-QLRPPPCSSARKGNRKLQKDEGRAEDPFLAAYRECT

Query:  GDQSSNNYKSHKNLSGFGGWIKMFG--TLSCKHFTAVRDDSLISSS
          +S+N  K  KN++G G      G  + SCK   +VRDD+L+  S
Subjt:  GDQSSNNYKSHKNLSGFGGWIKMFG--TLSCKHFTAVRDDSLISSS

A0A2C9VZY0 Uncharacterized protein6.4e-1139.44Show/hide
Query:  KTHSRGRVAFSWEKKPGVCKS--------------------AEVAPPHRRRDGDV---LMPKQLRPPPCSSARKGNRKLQKDEGRAEDPFLAAYRECTGD
        K H +G V FSWEKKPGV K+                     E   P R    D+   L P   +PP  SS+RKG  K Q      EDPFLAAY+ECT  
Subjt:  KTHSRGRVAFSWEKKPGVCKS--------------------AEVAPPHRRRDGDV---LMPKQLRPPPCSSARKGNRKLQKDEGRAEDPFLAAYRECTGD

Query:  QSSNNYKSHKNLSGFGGWIKMFGTLSCKHFTAVRDDSLISSS
         S +N K+   L    G  K   +LSCK+  +VRDD+L+  S
Subjt:  QSSNNYKSHKNLSGFGGWIKMFGTLSCKHFTAVRDDSLISSS

A0A2N9EQJ5 Uncharacterized protein9.2e-1039.33Show/hide
Query:  MGSINKTHSRGRVAFSWEKKPGVCKSAEVAPPHRRRDGDVLMPKQLRPPPC--------------------------SSARKGNRKLQKDEGRAEDPFLA
        M S +K HS+G + FSWE KPGV K  +   P    DGD ++  +L PPPC                          SS++KG RK        EDPFLA
Subjt:  MGSINKTHSRGRVAFSWEKKPGVCKSAEVAPPHRRRDGDVLMPKQLRPPPC--------------------------SSARKGNRKLQKDEGRAEDPFLA

Query:  AYRECTGDQSSNNYKSHKNLSGFGGWIKMFGTLSCKHFTAVRDDSLISSS
        AY ECT  +S    KS KN  G  G+ K     SCK   +VRDDSL+  S
Subjt:  AYRECTGDQSSNNYKSHKNLSGFGGWIKMFGTLSCKHFTAVRDDSLISSS

A0A5A7VA56 Uncharacterized protein4.1e-3463.85Show/hide
Query:  MGSINKTHSRGRVAFSWEKKPGVCKSAEVAPPHRRRD--GDVLMPKQLRPPPCSSARKGNRKLQKDEGRAEDPFLAAYRECTGDQSSNNYKSHKNLSGFG
        M   NKTHSRGRVAFSWE +PGVCK+A VAPP+R  D   D  + K+L+PPPC+ ARKGN+KL + +G AEDPFLAAYRECT +    N K  KN  GFG
Subjt:  MGSINKTHSRGRVAFSWEKKPGVCKSAEVAPPHRRRD--GDVLMPKQLRPPPCSSARKGNRKLQKDEGRAEDPFLAAYRECTGDQSSNNYKSHKNLSGFG

Query:  GWIKM--FGTLSCKHFTAVRDDSLISSSSS
        GW+ M  FG LSCK  TAVRDDSLISS  S
Subjt:  GWIKM--FGTLSCKHFTAVRDDSLISSSSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTAGCATTAACAAAACCCATTCAAGAGGCAGAGTGGCTTTCTCGTGGGAGAAGAAGCCAGGGGTGTGTAAATCAGCAGAGGTGGCGCCGCCGCACCGCCGCCGCGA
CGGCGACGTTCTGATGCCGAAGCAGCTCCGGCCACCGCCGTGTTCTTCGGCGAGAAAAGGGAACAGAAAGCTGCAGAAAGACGAGGGGCGCGCTGAAGACCCGTTTCTTG
CGGCCTATAGGGAGTGCACCGGAGATCAGAGTAGTAATAATTACAAGTCGCACAAAAATTTGTCTGGTTTTGGAGGGTGGATAAAAATGTTTGGTACTTTGTCCTGCAAG
CACTTCACGGCGGTTCGAGATGATAGTTTGATCAGTTCTTCTTCTTCTTCTTCTTCTTCT
mRNA sequenceShow/hide mRNA sequence
ATGGGTAGCATTAACAAAACCCATTCAAGAGGCAGAGTGGCTTTCTCGTGGGAGAAGAAGCCAGGGGTGTGTAAATCAGCAGAGGTGGCGCCGCCGCACCGCCGCCGCGA
CGGCGACGTTCTGATGCCGAAGCAGCTCCGGCCACCGCCGTGTTCTTCGGCGAGAAAAGGGAACAGAAAGCTGCAGAAAGACGAGGGGCGCGCTGAAGACCCGTTTCTTG
CGGCCTATAGGGAGTGCACCGGAGATCAGAGTAGTAATAATTACAAGTCGCACAAAAATTTGTCTGGTTTTGGAGGGTGGATAAAAATGTTTGGTACTTTGTCCTGCAAG
CACTTCACGGCGGTTCGAGATGATAGTTTGATCAGTTCTTCTTCTTCTTCTTCTTCTTCT
Protein sequenceShow/hide protein sequence
MGSINKTHSRGRVAFSWEKKPGVCKSAEVAPPHRRRDGDVLMPKQLRPPPCSSARKGNRKLQKDEGRAEDPFLAAYRECTGDQSSNNYKSHKNLSGFGGWIKMFGTLSCK
HFTAVRDDSLISSSSSSSSS