CuGenDBv2

Gene ID	MS008706
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	LOB domain-containing protein
Genome location	scaffold4:3232207..3232745
RNA-Seq Expression	MS008706
Synteny	MS008706
Gene Ontology terms	GO:0010468 - regulation of gene expression (biological process)
InterPro domains	IPR004883 - Lateral organ boundaries, LOB

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004141401.1 LOB domain-containing protein 39 [Cucumis sativus]

1.5e-62

85.93

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Query:  MSCNGCRVLRKGCSEGCVLRSCLHWIDSPESQGNATLFLAKFFGRSDLLSFISAVPDHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAET
        MSCNGCRVLRKGCSE CVLRS LHWIDSPE+QGNATLFLAKFFGRSDLLSFISAVP HQRPALFQSLLFEACGRTVNPVSGAVGLLS+GNWHVCQAAA+T
Subjt:  MSCNGCRVLRKGCSEGCVLRSCLHWIDSPESQGNATLFLAKFFGRSDLLSFISAVPDHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAET

Query:  VLGGGVLRPIPGIDVSGNSTGHVDESSVSFSTDVW
        +L GGVLRPIPGI++S N T ++D+SS++F+TDVW
Subjt:  VLGGGVLRPIPGIDVSGNSTGHVDESSVSFSTDVW

XP_008452637.1 PREDICTED: LOB domain-containing protein 39-like [Cucumis melo]

9.0e-63

86.67

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Query:  MSCNGCRVLRKGCSEGCVLRSCLHWIDSPESQGNATLFLAKFFGRSDLLSFISAVPDHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAET
        MSCNGCRVLRKGCSE CVLRS LHWIDSPE+QGNATLFLAKFFGRSDLLSFISAVP HQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAA+T
Subjt:  MSCNGCRVLRKGCSEGCVLRSCLHWIDSPESQGNATLFLAKFFGRSDLLSFISAVPDHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAET

Query:  VLGGGVLRPIPGIDVSGNSTGHVDESSVSFSTDVW
        +L GGVLRPIPGI++SGN T ++D+SS +F+ DVW
Subjt:  VLGGGVLRPIPGIDVSGNSTGHVDESSVSFSTDVW

XP_022137491.1 LOB domain-containing protein 39-like [Momordica charantia]

1.3e-72

100

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Query:  MSCNGCRVLRKGCSEGCVLRSCLHWIDSPESQGNATLFLAKFFGRSDLLSFISAVPDHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAET
        MSCNGCRVLRKGCSEGCVLRSCLHWIDSPESQGNATLFLAKFFGRSDLLSFISAVPDHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAET
Subjt:  MSCNGCRVLRKGCSEGCVLRSCLHWIDSPESQGNATLFLAKFFGRSDLLSFISAVPDHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAET

Query:  VLGGGVLRPIPGIDVSGNSTGHVDESSVSFSTDVW
        VLGGGVLRPIPGIDVSGNSTGHVDESSVSFSTDVW
Subjt:  VLGGGVLRPIPGIDVSGNSTGHVDESSVSFSTDVW

XP_023535944.1 LOB domain-containing protein 39-like [Cucurbita pepo subsp. pepo]

3.2e-60

83.7

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Query:  MSCNGCRVLRKGCSEGCVLRSCLHWIDSPESQGNATLFLAKFFGRSDLLSFISAVPDHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAET
        MSC+GCRVLRKGC+E CVLRS LHWI SPE+Q NATLFLAKFFGRSDLLSFI+AVP HQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQ AA+T
Subjt:  MSCNGCRVLRKGCSEGCVLRSCLHWIDSPESQGNATLFLAKFFGRSDLLSFISAVPDHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAET

Query:  VLGGGVLRPIPGIDVSGNSTGHVDESSVSFSTDVW
        VL GGVLRPIPGI++SGN T +VD+S+++F+TDVW
Subjt:  VLGGGVLRPIPGIDVSGNSTGHVDESSVSFSTDVW

XP_038899091.1 LOB domain-containing protein 39-like [Benincasa hispida]

4.5e-62

86.67

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Query:  MSCNGCRVLRKGCSEGCVLRSCLHWIDSPESQGNATLFLAKFFGRSDLLSFISAVPDHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAET
        MSCNGCRVLRKGCSE CVLR  LHWIDSPE+QGNATLFLAKFFGRSDLLSFISAVP HQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAA+T
Subjt:  MSCNGCRVLRKGCSEGCVLRSCLHWIDSPESQGNATLFLAKFFGRSDLLSFISAVPDHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAET

Query:  VLGGGVLRPIPGIDVSGNSTGHVDESSVSFSTDVW
        VL GGVLRPIPG ++SGN T ++DES ++F+TDVW
Subjt:  VLGGGVLRPIPGIDVSGNSTGHVDESSVSFSTDVW

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L3S5 LOB domain-containing protein

7.4e-63

85.93

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Query:  MSCNGCRVLRKGCSEGCVLRSCLHWIDSPESQGNATLFLAKFFGRSDLLSFISAVPDHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAET
        MSCNGCRVLRKGCSE CVLRS LHWIDSPE+QGNATLFLAKFFGRSDLLSFISAVP HQRPALFQSLLFEACGRTVNPVSGAVGLLS+GNWHVCQAAA+T
Subjt:  MSCNGCRVLRKGCSEGCVLRSCLHWIDSPESQGNATLFLAKFFGRSDLLSFISAVPDHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAET

Query:  VLGGGVLRPIPGIDVSGNSTGHVDESSVSFSTDVW
        +L GGVLRPIPGI++S N T ++D+SS++F+TDVW
Subjt:  VLGGGVLRPIPGIDVSGNSTGHVDESSVSFSTDVW

A0A1S3BVG9 LOB domain-containing protein 39-like

4.4e-63

86.67

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Query:  MSCNGCRVLRKGCSEGCVLRSCLHWIDSPESQGNATLFLAKFFGRSDLLSFISAVPDHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAET
        MSCNGCRVLRKGCSE CVLRS LHWIDSPE+QGNATLFLAKFFGRSDLLSFISAVP HQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAA+T
Subjt:  MSCNGCRVLRKGCSEGCVLRSCLHWIDSPESQGNATLFLAKFFGRSDLLSFISAVPDHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAET

Query:  VLGGGVLRPIPGIDVSGNSTGHVDESSVSFSTDVW
        +L GGVLRPIPGI++SGN T ++D+SS +F+ DVW
Subjt:  VLGGGVLRPIPGIDVSGNSTGHVDESSVSFSTDVW

A0A5A7VDI5 LOB domain-containing protein 39-like

4.4e-63

86.67

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Query:  MSCNGCRVLRKGCSEGCVLRSCLHWIDSPESQGNATLFLAKFFGRSDLLSFISAVPDHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAET
        MSCNGCRVLRKGCSE CVLRS LHWIDSPE+QGNATLFLAKFFGRSDLLSFISAVP HQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAA+T
Subjt:  MSCNGCRVLRKGCSEGCVLRSCLHWIDSPESQGNATLFLAKFFGRSDLLSFISAVPDHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAET

Query:  VLGGGVLRPIPGIDVSGNSTGHVDESSVSFSTDVW
        +L GGVLRPIPGI++SGN T ++D+SS +F+ DVW
Subjt:  VLGGGVLRPIPGIDVSGNSTGHVDESSVSFSTDVW

A0A6J1C6S3 LOB domain-containing protein 39-like

6.1e-73

100

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Query:  MSCNGCRVLRKGCSEGCVLRSCLHWIDSPESQGNATLFLAKFFGRSDLLSFISAVPDHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAET
        MSCNGCRVLRKGCSEGCVLRSCLHWIDSPESQGNATLFLAKFFGRSDLLSFISAVPDHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAET
Subjt:  MSCNGCRVLRKGCSEGCVLRSCLHWIDSPESQGNATLFLAKFFGRSDLLSFISAVPDHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAET

Query:  VLGGGVLRPIPGIDVSGNSTGHVDESSVSFSTDVW
        VLGGGVLRPIPGIDVSGNSTGHVDESSVSFSTDVW
Subjt:  VLGGGVLRPIPGIDVSGNSTGHVDESSVSFSTDVW

A0A6J1FEE1 LOB domain-containing protein 38-like

2.0e-60

84.44

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Query:  MSCNGCRVLRKGCSEGCVLRSCLHWIDSPESQGNATLFLAKFFGRSDLLSFISAVPDHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAET
        MSC+GCRVLRKGC+E CVLRS LHWI SPE+Q NATLFLAKFFGRSDLLSFI+AVP HQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQ AAET
Subjt:  MSCNGCRVLRKGCSEGCVLRSCLHWIDSPESQGNATLFLAKFFGRSDLLSFISAVPDHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAET

Query:  VLGGGVLRPIPGIDVSGNSTGHVDESSVSFSTDVW
        VL GGVLRPIPGI++SGN T +VD+SS++ +TDVW
Subjt:  VLGGGVLRPIPGIDVSGNSTGHVDESSVSFSTDVW

SwissProt top hits

e value

%identity

Alignment

Q9CA30 LOB domain-containing protein 42

2.3e-37

61.02

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Query:  MSCNGCRVLRKGCSEGCVLRSCLHWIDSPESQGNATLFLAKFFGRSDLLSFISAVPDHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAET
        +SCNGCRVLRKGC++ C +R CL WI S +SQ NATLFLAKF+GR+ LL+ I + PDH RPA+F+SLL+EACGR VNPV G+VGL+ SGNW  CQAA + 
Subjt:  MSCNGCRVLRKGCSEGCVLRSCLHWIDSPESQGNATLFLAKFFGRSDLLSFISAVPDHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAET

Query:  VLGGGVL--RPIPGIDVS
        VL G  +   P+P    S
Subjt:  VLGGGVL--RPIPGIDVS

Q9FN11 LOB domain-containing protein 37

4.2e-47

71.79

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Query:  MSCNGCRVLRKGCSEGCVLRSCLHWIDSPESQGNATLFLAKFFGRSDLLSFISAVPDHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAET
        MSCNGCRVLRKGCSE C+LR C+ WI++ ++QG+AT+F+AKFFGR+ L+SFISAVPD QRPALFQSLL+EACGRTVNPV+GA+G+L +GNW++CQAA ET
Subjt:  MSCNGCRVLRKGCSEGCVLRSCLHWIDSPESQGNATLFLAKFFGRSDLLSFISAVPDHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAET

Query:  VLGGGVLRPIPGIDVSG
        VL GG LRPIP +   G
Subjt:  VLGGGVLRPIPGIDVSG

Q9SN23 LOB domain-containing protein 38

8.5e-48

70.08

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Query:  MSCNGCRVLRKGCSEGCVLRSCLHWIDSPESQGNATLFLAKFFGRSDLLSFISAVPDHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAET
        MSCNGCRVLRKGCSE C+LR C+ WI+SPE+QG+AT+F+AKFFGR+ L+SFISAVP+ Q PALFQSLL+EACGRTVNPV+GAVGLL +GNW+VCQAA ET
Subjt:  MSCNGCRVLRKGCSEGCVLRSCLHWIDSPESQGNATLFLAKFFGRSDLLSFISAVPDHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAET

Query:  VLGGGVLRPIPGIDVSGNSTGHVDESS
        VL GG L+PIP +   G   G    +S
Subjt:  VLGGGVLRPIPGIDVSGNSTGHVDESS

Q9SZE8 LOB domain-containing protein 39

3.8e-48

70.15

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Query:  MSCNGCRVLRKGCSEGCVLRSCLHWIDSPESQGNATLFLAKFFGRSDLLSFISAVPDHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAET
        MSCNGCRVLRKGCSE C+LR CL WI+S ESQG+AT+F+AKFFGR+ L+SFIS+VP+ QRPALFQSLLFEACGRTVNPV+GAVG+L + NWHVCQAA ET
Subjt:  MSCNGCRVLRKGCSEGCVLRSCLHWIDSPESQGNATLFLAKFFGRSDLLSFISAVPDHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAET

Query:  VLGGGVLRPIPGIDVSGNSTGHVDESSVSFSTDV
        VL GG LRPI  +  S +     DESS  +  DV
Subjt:  VLGGGVLRPIPGIDVSGNSTGHVDESSVSFSTDV

Q9ZW96 LOB domain-containing protein 40

2.9e-40

66.36

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Query:  MSCNGCRVLRKGCSEGCVLRSCLHWIDSPESQGNATLFLAKFFGRSDLLSFISAVPDHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAET
        MSCNGCRVLRKGCSE C +R CL WI S ESQ NAT+FLAKF+GR+ L++ ++  PDH RPA+F+SLL+EACGR VNP+ G+VGLL SGNWH+CQAA E 
Subjt:  MSCNGCRVLRKGCSEGCVLRSCLHWIDSPESQGNATLFLAKFFGRSDLLSFISAVPDHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAET

Query:  VLGGGVLRPI
        V+ G  + PI
Subjt:  VLGGGVLRPI

Arabidopsis top hits

e value

%identity

Alignment

AT1G67100.1 LOB domain-containing protein 40

2.1e-41

66.36

Show/hide

Query:  MSCNGCRVLRKGCSEGCVLRSCLHWIDSPESQGNATLFLAKFFGRSDLLSFISAVPDHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAET
        MSCNGCRVLRKGCSE C +R CL WI S ESQ NAT+FLAKF+GR+ L++ ++  PDH RPA+F+SLL+EACGR VNP+ G+VGLL SGNWH+CQAA E 
Subjt:  MSCNGCRVLRKGCSEGCVLRSCLHWIDSPESQGNATLFLAKFFGRSDLLSFISAVPDHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAET

Query:  VLGGGVLRPI
        V+ G  + PI
Subjt:  VLGGGVLRPI

AT1G68510.1 LOB domain-containing protein 42

1.6e-38

61.02

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Query:  MSCNGCRVLRKGCSEGCVLRSCLHWIDSPESQGNATLFLAKFFGRSDLLSFISAVPDHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAET
        +SCNGCRVLRKGC++ C +R CL WI S +SQ NATLFLAKF+GR+ LL+ I + PDH RPA+F+SLL+EACGR VNPV G+VGL+ SGNW  CQAA + 
Subjt:  MSCNGCRVLRKGCSEGCVLRSCLHWIDSPESQGNATLFLAKFFGRSDLLSFISAVPDHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAET

Query:  VLGGGVL--RPIPGIDVS
        VL G  +   P+P    S
Subjt:  VLGGGVL--RPIPGIDVS

AT3G49940.1 LOB domain-containing protein 38

6.0e-49

70.08

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Query:  MSCNGCRVLRKGCSEGCVLRSCLHWIDSPESQGNATLFLAKFFGRSDLLSFISAVPDHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAET
        MSCNGCRVLRKGCSE C+LR C+ WI+SPE+QG+AT+F+AKFFGR+ L+SFISAVP+ Q PALFQSLL+EACGRTVNPV+GAVGLL +GNW+VCQAA ET
Subjt:  MSCNGCRVLRKGCSEGCVLRSCLHWIDSPESQGNATLFLAKFFGRSDLLSFISAVPDHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAET

Query:  VLGGGVLRPIPGIDVSGNSTGHVDESS
        VL GG L+PIP +   G   G    +S
Subjt:  VLGGGVLRPIPGIDVSGNSTGHVDESS

AT4G37540.1 LOB domain-containing protein 39

2.7e-49

70.15

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Query:  MSCNGCRVLRKGCSEGCVLRSCLHWIDSPESQGNATLFLAKFFGRSDLLSFISAVPDHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAET
        MSCNGCRVLRKGCSE C+LR CL WI+S ESQG+AT+F+AKFFGR+ L+SFIS+VP+ QRPALFQSLLFEACGRTVNPV+GAVG+L + NWHVCQAA ET
Subjt:  MSCNGCRVLRKGCSEGCVLRSCLHWIDSPESQGNATLFLAKFFGRSDLLSFISAVPDHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAET

Query:  VLGGGVLRPIPGIDVSGNSTGHVDESSVSFSTDV
        VL GG LRPI  +  S +     DESS  +  DV
Subjt:  VLGGGVLRPIPGIDVSGNSTGHVDESSVSFSTDV

AT5G67420.1 LOB domain-containing protein 37

3.0e-48

71.79

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Query:  MSCNGCRVLRKGCSEGCVLRSCLHWIDSPESQGNATLFLAKFFGRSDLLSFISAVPDHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAET
        MSCNGCRVLRKGCSE C+LR C+ WI++ ++QG+AT+F+AKFFGR+ L+SFISAVPD QRPALFQSLL+EACGRTVNPV+GA+G+L +GNW++CQAA ET
Subjt:  MSCNGCRVLRKGCSEGCVLRSCLHWIDSPESQGNATLFLAKFFGRSDLLSFISAVPDHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAET

Query:  VLGGGVLRPIPGIDVSG
        VL GG LRPIP +   G
Subjt:  VLGGGVLRPIPGIDVSG

Sequences

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CDS sequence

Show/hide CDS sequence

ATGAGTTGCAACGGATGCAGAGTTCTTCGAAAGGGTTGCAGCGAAGGCTGTGTTCTAAGATCGTGTCTCCACTGGATTGATTCGCCGGAATCCCAAGGCAACGCCACCTT
ATTTCTCGCTAAATTTTTCGGCCGGAGCGATCTCTTGTCCTTCATCTCCGCCGTCCCCGATCACCAAAGACCTGCTTTGTTCCAGTCTCTGTTATTCGAAGCTTGCGGCC
GCACGGTGAATCCGGTGAGCGGCGCCGTGGGGCTGTTATCGAGCGGGAACTGGCACGTGTGTCAGGCGGCGGCGGAGACAGTGCTCGGCGGGGGAGTTCTCCGGCCGATA
CCCGGAATCGATGTTTCTGGAAATTCGACGGGACACGTGGATGAATCGTCTGTCAGTTTCAGTACAGATGTGTGG

mRNA sequence

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Protein sequence

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MSCNGCRVLRKGCSEGCVLRSCLHWIDSPESQGNATLFLAKFFGRSDLLSFISAVPDHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAETVLGGGVLRPI
PGIDVSGNSTGHVDESSVSFSTDVW

MS008706 (gene) of Bitter gourd (TR) v1 genome