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MS008709 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS008709
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionGlycosyl hydrolase family 35 protein
Genome locationscaffold4:3253532..3253892
RNA-Seq ExpressionMS008709
SyntenyMS008709
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008452634.1 PREDICTED: uncharacterized protein LOC103493594 isoform X1 [Cucumis melo]2.0e-2971.43Show/hide
Query:  MAPNHRHLESNERLSASPLNRKLKLQDKQHSSPMRRNTHTGDVNLYDYRPVDPVPSSKRSIKHGPIEHGSPLIPYIPNPSPPPQHQPGGYV
        MA N+ H+ESNE L A+P NRK+KLQD +  +P R+N   GDVNLYDY P+DPVPSSKRSIKHGPIEHGSPLIP++PNPSPP Q QPGG+V
Subjt:  MAPNHRHLESNERLSASPLNRKLKLQDKQHSSPMRRNTHTGDVNLYDYRPVDPVPSSKRSIKHGPIEHGSPLIPYIPNPSPPPQHQPGGYV
XP_008452635.1 PREDICTED: uncharacterized protein LOC103493594 isoform X2 [Cucumis melo]2.0e-2971.43Show/hide
Query:  MAPNHRHLESNERLSASPLNRKLKLQDKQHSSPMRRNTHTGDVNLYDYRPVDPVPSSKRSIKHGPIEHGSPLIPYIPNPSPPPQHQPGGYV
        MA N+ H+ESNE L A+P NRK+KLQD +  +P R+N   GDVNLYDY P+DPVPSSKRSIKHGPIEHGSPLIP++PNPSPP Q QPGG+V
Subjt:  MAPNHRHLESNERLSASPLNRKLKLQDKQHSSPMRRNTHTGDVNLYDYRPVDPVPSSKRSIKHGPIEHGSPLIPYIPNPSPPPQHQPGGYV
XP_011654146.1 uncharacterized protein LOC105435308 [Cucumis sativus]2.1e-3173.63Show/hide
Query:  MAPNHRHLESNERLSASPLNRKLKLQDKQHSSPMRRNTHTGDVNLYDYRPVDPVPSSKRSIKHGPIEHGSPLIPYIPNPSPPPQHQPGGYV
        MAPNH H+ESNE L A+P NRK+KLQD++ S+P R+N   GDVNLYDY P+DPVPSSKRSIKHGPIEHGSPLIP++P+PSPP Q QPGG+V
Subjt:  MAPNHRHLESNERLSASPLNRKLKLQDKQHSSPMRRNTHTGDVNLYDYRPVDPVPSSKRSIKHGPIEHGSPLIPYIPNPSPPPQHQPGGYV
XP_022156704.1 uncharacterized protein LOC111023285 [Momordica charantia]2.8e-4498.9Show/hide
Query:  MAPNHRHLESNERLSASPLNRKLKLQDKQHSSPMRRNTHTGDVNLYDYRPVDPVPSSKRSIKHGPIEHGSPLIPYIPNPSPPPQHQPGGYV
        MAPNHRHLESNERLSASPLNRKLKLQDKQHSSPMRRNTHTGDVNLYDYRPVDPVPSSKRSIKHGPIEHGSPLIPYIPNPSP PQHQPGGYV
Subjt:  MAPNHRHLESNERLSASPLNRKLKLQDKQHSSPMRRNTHTGDVNLYDYRPVDPVPSSKRSIKHGPIEHGSPLIPYIPNPSPPPQHQPGGYV
XP_038897195.1 uncharacterized protein LOC120085331 [Benincasa hispida]7.5e-2970.33Show/hide
Query:  MAPNHRHLESNERLSASPLNRKLKLQDKQHSSPMRRNTHTGDVNLYDYRPVDPVPSSKRSIKHGPIEHGSPLIPYIPNPSPPPQHQPGGYV
        M PNH H+ESN+ L A+P NRK+KLQD  HS+P R N   G++NLYDY P+DPVP+SKRSIKHGPIEHGSPLIP++PNPSPP Q QPGG+V
Subjt:  MAPNHRHLESNERLSASPLNRKLKLQDKQHSSPMRRNTHTGDVNLYDYRPVDPVPSSKRSIKHGPIEHGSPLIPYIPNPSPPPQHQPGGYV
TrEMBL top hitse value%identityAlignment
A0A0A0L0G3 Uncharacterized protein1.0e-3173.63Show/hide
Query:  MAPNHRHLESNERLSASPLNRKLKLQDKQHSSPMRRNTHTGDVNLYDYRPVDPVPSSKRSIKHGPIEHGSPLIPYIPNPSPPPQHQPGGYV
        MAPNH H+ESNE L A+P NRK+KLQD++ S+P R+N   GDVNLYDY P+DPVPSSKRSIKHGPIEHGSPLIP++P+PSPP Q QPGG+V
Subjt:  MAPNHRHLESNERLSASPLNRKLKLQDKQHSSPMRRNTHTGDVNLYDYRPVDPVPSSKRSIKHGPIEHGSPLIPYIPNPSPPPQHQPGGYV
A0A1S3BU91 uncharacterized protein LOC103493594 isoform X29.5e-3071.43Show/hide
Query:  MAPNHRHLESNERLSASPLNRKLKLQDKQHSSPMRRNTHTGDVNLYDYRPVDPVPSSKRSIKHGPIEHGSPLIPYIPNPSPPPQHQPGGYV
        MA N+ H+ESNE L A+P NRK+KLQD +  +P R+N   GDVNLYDY P+DPVPSSKRSIKHGPIEHGSPLIP++PNPSPP Q QPGG+V
Subjt:  MAPNHRHLESNERLSASPLNRKLKLQDKQHSSPMRRNTHTGDVNLYDYRPVDPVPSSKRSIKHGPIEHGSPLIPYIPNPSPPPQHQPGGYV
A0A1S3BUB3 uncharacterized protein LOC103493594 isoform X19.5e-3071.43Show/hide
Query:  MAPNHRHLESNERLSASPLNRKLKLQDKQHSSPMRRNTHTGDVNLYDYRPVDPVPSSKRSIKHGPIEHGSPLIPYIPNPSPPPQHQPGGYV
        MA N+ H+ESNE L A+P NRK+KLQD +  +P R+N   GDVNLYDY P+DPVPSSKRSIKHGPIEHGSPLIP++PNPSPP Q QPGG+V
Subjt:  MAPNHRHLESNERLSASPLNRKLKLQDKQHSSPMRRNTHTGDVNLYDYRPVDPVPSSKRSIKHGPIEHGSPLIPYIPNPSPPPQHQPGGYV
A0A5A7V8H4 Putative Glycosyl hydrolase family 35 protein9.5e-3071.43Show/hide
Query:  MAPNHRHLESNERLSASPLNRKLKLQDKQHSSPMRRNTHTGDVNLYDYRPVDPVPSSKRSIKHGPIEHGSPLIPYIPNPSPPPQHQPGGYV
        MA N+ H+ESNE L A+P NRK+KLQD +  +P R+N   GDVNLYDY P+DPVPSSKRSIKHGPIEHGSPLIP++PNPSPP Q QPGG+V
Subjt:  MAPNHRHLESNERLSASPLNRKLKLQDKQHSSPMRRNTHTGDVNLYDYRPVDPVPSSKRSIKHGPIEHGSPLIPYIPNPSPPPQHQPGGYV
A0A6J1DUC1 uncharacterized protein LOC1110232851.4e-4498.9Show/hide
Query:  MAPNHRHLESNERLSASPLNRKLKLQDKQHSSPMRRNTHTGDVNLYDYRPVDPVPSSKRSIKHGPIEHGSPLIPYIPNPSPPPQHQPGGYV
        MAPNHRHLESNERLSASPLNRKLKLQDKQHSSPMRRNTHTGDVNLYDYRPVDPVPSSKRSIKHGPIEHGSPLIPYIPNPSP PQHQPGGYV
Subjt:  MAPNHRHLESNERLSASPLNRKLKLQDKQHSSPMRRNTHTGDVNLYDYRPVDPVPSSKRSIKHGPIEHGSPLIPYIPNPSPPPQHQPGGYV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G01075.1 Glycosyl hydrolase family 35 protein2.4e-0960.38Show/hide
Query:  VNLYDYR-PVDPVPSSKRSIKHGPIEHGSPLIPYIPNP-----SPPPQHQPGG
        V L DY  PVDP P++K SIK GPIEHG+PL PYIP P     SPPPQ    G
Subjt:  VNLYDYR-PVDPVPSSKRSIKHGPIEHGSPLIPYIPNP-----SPPPQHQPGG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCCGAACCACCGCCATCTCGAGTCGAATGAACGTTTATCCGCATCACCATTAAACAGGAAGCTGAAGTTGCAGGACAAGCAACATAGTAGCCCAATGAGGAGGAA
CACACACACGGGTGATGTAAATCTTTACGACTACCGCCCCGTTGATCCAGTTCCAAGCTCAAAGAGATCCATAAAACATGGTCCAATTGAGCATGGATCTCCTCTGATAC
CCTACATTCCAAATCCTTCACCTCCCCCTCAACATCAGCCGGGCGGTTATGTG
mRNA sequenceShow/hide mRNA sequence
ATGGCTCCGAACCACCGCCATCTCGAGTCGAATGAACGTTTATCCGCATCACCATTAAACAGGAAGCTGAAGTTGCAGGACAAGCAACATAGTAGCCCAATGAGGAGGAA
CACACACACGGGTGATGTAAATCTTTACGACTACCGCCCCGTTGATCCAGTTCCAAGCTCAAAGAGATCCATAAAACATGGTCCAATTGAGCATGGATCTCCTCTGATAC
CCTACATTCCAAATCCTTCACCTCCCCCTCAACATCAGCCGGGCGGTTATGTG
Protein sequenceShow/hide protein sequence
MAPNHRHLESNERLSASPLNRKLKLQDKQHSSPMRRNTHTGDVNLYDYRPVDPVPSSKRSIKHGPIEHGSPLIPYIPNPSPPPQHQPGGYV