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MS008726 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS008726
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionF-box protein GID2
Genome locationscaffold4:3351203..3351733
RNA-Seq ExpressionMS008726
SyntenyMS008726
Gene Ontology termsGO:0009740 - gibberellic acid mediated signaling pathway (biological process)
GO:0009845 - seed germination (biological process)
GO:0010162 - seed dormancy process (biological process)
GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process (biological process)
GO:0005634 - nucleus (cellular component)
GO:0019005 - SCF ubiquitin ligase complex (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR001810 - F-box domain
IPR036047 - F-box-like domain superfamily
IPR045118 - F-box only protein FBXO9/FBXO48


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008452610.1 PREDICTED: F-box protein GID2-like [Cucumis melo]3.2e-7678.35Show/hide
Query:  MKRVLGDGDGDGDGDRKMGKKSRAETAE------DSASGKSGFVNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQ
        MKRV+     DG GDRKMGKK +AET +      +  S K+GF+NLDDNLLFEV KHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQ
Subjt:  MKRVLGDGDGDGDGDRKMGKKSRAETAE------DSASGKSGFVNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQ

Query:  LRSVVLALGGFRRLHSLFIWPLTKPQSSAAAPS-----------SPASSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
        LRSVVLALGGFRRLHSLFIWPLTKPQSS+++ S           S +SS+SWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
Subjt:  LRSVVLALGGFRRLHSLFIWPLTKPQSSAAAPS-----------SPASSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
XP_011654137.1 F-box protein GID2 [Cucumis sativus]2.5e-7678.87Show/hide
Query:  MKRVLGDGDGDGDGDRKMGKKSRAETAE-------DSASGKSGFVNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQ
        MKRV+     DG GDRKMGKK +AET +       +  S K+GF+NLDDNLLFEV KHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQ
Subjt:  MKRVLGDGDGDGDGDRKMGKKSRAETAE-------DSASGKSGFVNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQ

Query:  QLRSVVLALGGFRRLHSLFIWPLTKPQSSAAAPSSPASSS----------SWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
        QLRSVVLALGGFRRLHSLFIWPLTKPQSS+++ SS +SSS          SWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
Subjt:  QLRSVVLALGGFRRLHSLFIWPLTKPQSSAAAPSSPASSS----------SWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
XP_022151668.1 F-box protein GID2 [Momordica charantia]6.9e-9599.44Show/hide
Query:  MKRVLGDGDGDGDGDRKMGKKSRAETAEDSASGKSGFVNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVL
        MKRVLGDGDGDGDGDRK GKKSRAETAEDSASGKSGFVNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVL
Subjt:  MKRVLGDGDGDGDGDRKMGKKSRAETAEDSASGKSGFVNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVL

Query:  ALGGFRRLHSLFIWPLTKPQSSAAAPSSPASSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
        ALGGFRRLHSLFIWPLTKPQSSAAAPSSPASSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
Subjt:  ALGGFRRLHSLFIWPLTKPQSSAAAPSSPASSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
XP_022937325.1 F-box protein GID2-like [Cucurbita moschata]1.8e-7482.32Show/hide
Query:  MKRVLGDGDGDGDGDRKMGKKSRAETAEDSASG---KSGFVNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
        MKRV+     +G GDRK  KK RA + +    G   K+GF+NLDDNLLFEV KHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
Subjt:  MKRVLGDGDGDGDGDRKMGKKSRAETAEDSASG---KSGFVNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS

Query:  VVLALGGFRRLHSLFIWPLTKPQSSAAAPSSPASSSS-WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
        VVLALGGFRRLHSLFIWPLTKPQSS+++ SS ASSSS WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFS+RGR
Subjt:  VVLALGGFRRLHSLFIWPLTKPQSSAAAPSSPASSSS-WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
XP_038900230.1 F-box protein GID2 [Benincasa hispida]1.4e-7681.62Show/hide
Query:  MKRVLGDGDGDGDGDRKMGKKSRAETAEDSASG----KSGFVNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLR
        MKRV+     DGDGDRK GKK RAET + +  G    ++GF+NLDDNLLFEV KHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLR
Subjt:  MKRVLGDGDGDGDGDRKMGKKSRAETAEDSASG----KSGFVNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLR

Query:  SVVLALGGFRRLHSLFIWPLTKPQSSAAAPS-----SPASSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRG
        SVVLALGGFRRLHSLFIWPLTKPQSS+++ S     S +SS+SWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRG
Subjt:  SVVLALGGFRRLHSLFIWPLTKPQSSAAAPS-----SPASSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRG
TrEMBL top hitse value%identityAlignment
A0A0A0L2H5 F-box domain-containing protein1.2e-7678.87Show/hide
Query:  MKRVLGDGDGDGDGDRKMGKKSRAETAE-------DSASGKSGFVNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQ
        MKRV+     DG GDRKMGKK +AET +       +  S K+GF+NLDDNLLFEV KHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQ
Subjt:  MKRVLGDGDGDGDGDRKMGKKSRAETAE-------DSASGKSGFVNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQ

Query:  QLRSVVLALGGFRRLHSLFIWPLTKPQSSAAAPSSPASSS----------SWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
        QLRSVVLALGGFRRLHSLFIWPLTKPQSS+++ SS +SSS          SWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
Subjt:  QLRSVVLALGGFRRLHSLFIWPLTKPQSSAAAPSSPASSS----------SWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
A0A1S3BV18 F-box protein GID2-like1.5e-7678.35Show/hide
Query:  MKRVLGDGDGDGDGDRKMGKKSRAETAE------DSASGKSGFVNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQ
        MKRV+     DG GDRKMGKK +AET +      +  S K+GF+NLDDNLLFEV KHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQ
Subjt:  MKRVLGDGDGDGDGDRKMGKKSRAETAE------DSASGKSGFVNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQ

Query:  LRSVVLALGGFRRLHSLFIWPLTKPQSSAAAPS-----------SPASSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
        LRSVVLALGGFRRLHSLFIWPLTKPQSS+++ S           S +SS+SWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
Subjt:  LRSVVLALGGFRRLHSLFIWPLTKPQSSAAAPS-----------SPASSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
A0A5A7VFE5 F-box protein GID2-like1.5e-7678.35Show/hide
Query:  MKRVLGDGDGDGDGDRKMGKKSRAETAE------DSASGKSGFVNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQ
        MKRV+     DG GDRKMGKK +AET +      +  S K+GF+NLDDNLLFEV KHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQ
Subjt:  MKRVLGDGDGDGDGDRKMGKKSRAETAE------DSASGKSGFVNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQ

Query:  LRSVVLALGGFRRLHSLFIWPLTKPQSSAAAPS-----------SPASSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
        LRSVVLALGGFRRLHSLFIWPLTKPQSS+++ S           S +SS+SWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
Subjt:  LRSVVLALGGFRRLHSLFIWPLTKPQSSAAAPS-----------SPASSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
A0A6J1DCV3 F-box protein GID23.3e-9599.44Show/hide
Query:  MKRVLGDGDGDGDGDRKMGKKSRAETAEDSASGKSGFVNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVL
        MKRVLGDGDGDGDGDRK GKKSRAETAEDSASGKSGFVNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVL
Subjt:  MKRVLGDGDGDGDGDRKMGKKSRAETAEDSASGKSGFVNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVL

Query:  ALGGFRRLHSLFIWPLTKPQSSAAAPSSPASSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
        ALGGFRRLHSLFIWPLTKPQSSAAAPSSPASSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
Subjt:  ALGGFRRLHSLFIWPLTKPQSSAAAPSSPASSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
A0A6J1FA22 F-box protein GID2-like8.5e-7582.32Show/hide
Query:  MKRVLGDGDGDGDGDRKMGKKSRAETAEDSASG---KSGFVNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
        MKRV+     +G GDRK  KK RA + +    G   K+GF+NLDDNLLFEV KHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
Subjt:  MKRVLGDGDGDGDGDRKMGKKSRAETAEDSASG---KSGFVNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS

Query:  VVLALGGFRRLHSLFIWPLTKPQSSAAAPSSPASSSS-WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
        VVLALGGFRRLHSLFIWPLTKPQSS+++ SS ASSSS WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFS+RGR
Subjt:  VVLALGGFRRLHSLFIWPLTKPQSSAAAPSSPASSSS-WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
SwissProt top hitse value%identityAlignment
Q7XAK4 F-box protein GID21.4e-2639.15Show/hide
Query:  GDGDGDGDRKMGKKSRAETAEDSASGKSG--------------------------FVNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELIC
        GDG G GD +  K+ R + +  S+ G++                             +L ++L+FEVL+  +ARTLA AACVS+ W + AEDERLWE  C
Subjt:  GDGDGDGDRKMGKKSRAETAEDSASGKSG--------------------------FVNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELIC

Query:  TRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSAAAPSSPASSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKM
         R WAN G   +QLR+VVL+LGGFRRLH+++I PL      A  P                  +PP R G+D+V LSLSL SI +++ M
Subjt:  TRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSAAAPSSPASSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKM
Q9LUB6 F-box protein SNE2.2e-1130.83Show/hide
Query:  VNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSAAAPSSPASSSSWSP
        +N   ++L E+L+ +D  +L  AACV + W   A ++ +WE +C R  +     +  LRSVV ALGG+R L+ L I P                      
Subjt:  VNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSAAAPSSPASSSSWSP

Query:  FPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKM
           ++   P   W +D++ LSLSL  + YYE++
Subjt:  FPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKM
Q9STX3 F-box protein GID22.9e-4857.14Show/hide
Query:  MKRVLGDGDGDGDGDRKMGKKSRAETAEDSASGKSGFVNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVL
        MKR   D D  GD   +  KK ++   E+      GF NLD+NL++EVLKHVDA+TLAM++CVSK WHKTA+DERLWELICTRHW N GCG  QLRSVVL
Subjt:  MKRVLGDGDGDGDGDRKMGKKSRAETAEDSASGKSGFVNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVL

Query:  ALGGFRRLHSLFIWPLTKPQSSAAAPSSPASSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNR
        ALGGFRRLHSL++WPL+KP                          P AR+GKDE+ L+LSLLSIRYYEKM+F+ R
Subjt:  ALGGFRRLHSLFIWPLTKPQSSAAAPSSPASSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNR
Arabidopsis top hitse value%identityAlignment
AT4G24210.1 F-box family protein2.1e-4957.14Show/hide
Query:  MKRVLGDGDGDGDGDRKMGKKSRAETAEDSASGKSGFVNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVL
        MKR   D D  GD   +  KK ++   E+      GF NLD+NL++EVLKHVDA+TLAM++CVSK WHKTA+DERLWELICTRHW N GCG  QLRSVVL
Subjt:  MKRVLGDGDGDGDGDRKMGKKSRAETAEDSASGKSGFVNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVL

Query:  ALGGFRRLHSLFIWPLTKPQSSAAAPSSPASSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNR
        ALGGFRRLHSL++WPL+KP                          P AR+GKDE+ L+LSLLSIRYYEKM+F+ R
Subjt:  ALGGFRRLHSLFIWPLTKPQSSAAAPSSPASSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNR
AT5G48170.1 F-box family protein1.6e-1230.83Show/hide
Query:  VNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSAAAPSSPASSSSWSP
        +N   ++L E+L+ +D  +L  AACV + W   A ++ +WE +C R  +     +  LRSVV ALGG+R L+ L I P                      
Subjt:  VNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSAAAPSSPASSSSWSP

Query:  FPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKM
           ++   P   W +D++ LSLSL  + YYE++
Subjt:  FPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKM

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCGAGTTCTTGGCGATGGTGATGGTGATGGTGATGGGGATCGGAAGATGGGGAAGAAATCGAGGGCGGAGACGGCGGAAGATTCCGCTTCCGGGAAGTCTGGGTT
TGTGAACTTGGATGATAATTTACTGTTCGAGGTGTTGAAGCATGTGGATGCGAGGACTCTGGCCATGGCGGCGTGCGTGAGCAAGCAGTGGCACAAAACGGCGGAGGACG
AGCGGCTCTGGGAGCTGATCTGCACCAGGCACTGGGCCAACACCGGCTGCGGCAACCAGCAACTCCGATCTGTAGTTCTAGCCCTCGGCGGCTTCCGTCGTCTCCACTCC
CTCTTCATCTGGCCTCTTACAAAACCCCAATCGTCGGCCGCCGCCCCTTCATCCCCGGCCTCCTCTTCCTCTTGGTCTCCGTTTCCGGCGATGATTGGGTCGAAGCCGCC
GGCCCGCTGGGGAAAGGACGAGGTCCATCTCTCGCTCTCCCTCCTCTCAATTCGGTACTACGAGAAGATGAATTTCAGCAACAGAGGCAGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGCGAGTTCTTGGCGATGGTGATGGTGATGGTGATGGGGATCGGAAGATGGGGAAGAAATCGAGGGCGGAGACGGCGGAAGATTCCGCTTCCGGGAAGTCTGGGTT
TGTGAACTTGGATGATAATTTACTGTTCGAGGTGTTGAAGCATGTGGATGCGAGGACTCTGGCCATGGCGGCGTGCGTGAGCAAGCAGTGGCACAAAACGGCGGAGGACG
AGCGGCTCTGGGAGCTGATCTGCACCAGGCACTGGGCCAACACCGGCTGCGGCAACCAGCAACTCCGATCTGTAGTTCTAGCCCTCGGCGGCTTCCGTCGTCTCCACTCC
CTCTTCATCTGGCCTCTTACAAAACCCCAATCGTCGGCCGCCGCCCCTTCATCCCCGGCCTCCTCTTCCTCTTGGTCTCCGTTTCCGGCGATGATTGGGTCGAAGCCGCC
GGCCCGCTGGGGAAAGGACGAGGTCCATCTCTCGCTCTCCCTCCTCTCAATTCGGTACTACGAGAAGATGAATTTCAGCAACAGAGGCAGA
Protein sequenceShow/hide protein sequence
MKRVLGDGDGDGDGDRKMGKKSRAETAEDSASGKSGFVNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHS
LFIWPLTKPQSSAAAPSSPASSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR