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MS008763 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS008763
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionWD_REPEATS_REGION domain-containing protein
Genome locationscaffold4:3541653..3542027
RNA-Seq ExpressionMS008763
SyntenyMS008763
Gene Ontology termsGO:0006364 - rRNA processing (biological process)
GO:0030174 - regulation of DNA-dependent DNA replication initiation (biological process)
GO:0005656 - nuclear pre-replicative complex (cellular component)
GO:0097344 - Rix1 complex (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR001680 - WD40 repeat
IPR015943 - WD40/YVTN repeat-like-containing domain superfamily
IPR036322 - WD40-repeat-containing domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064393.1 protein ROOT INITIATION DEFECTIVE 3 [Cucumis melo var. makuwa]2.6e-4088.54Show/hide
Query:  AGRLLIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRVWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIISSSVDQTCKV
        +GRLL KKWHAHYRAVTCLVFSEDDSLLISGSEDGC+RVW LITVFDDGWQREAKHLYEHSFT HNLP+TDI VVG+ GG NAIIISSSVD+TCKV
Subjt:  AGRLLIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRVWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIISSSVDQTCKV

KGN55205.1 hypothetical protein Csa_012375 [Cucumis sativus]3.4e-4087.5Show/hide
Query:  AGRLLIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRVWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIISSSVDQTCKV
        +GRLL KKWHAHYRAVTCLVFSEDDSLL+SGSEDGC+RVW LITVFDDGWQREAKHLYEHSFT HNLP+TDI VVG+ GG NAIIISSSVD+TCKV
Subjt:  AGRLLIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRVWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIISSSVDQTCKV

XP_008452567.1 PREDICTED: protein ROOT INITIATION DEFECTIVE 3 [Cucumis melo]2.6e-4088.54Show/hide
Query:  AGRLLIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRVWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIISSSVDQTCKV
        +GRLL KKWHAHYRAVTCLVFSEDDSLLISGSEDGC+RVW LITVFDDGWQREAKHLYEHSFT HNLP+TDI VVG+ GG NAIIISSSVD+TCKV
Subjt:  AGRLLIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRVWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIISSSVDQTCKV

XP_011654116.2 protein ROOT INITIATION DEFECTIVE 3 [Cucumis sativus]3.4e-4087.5Show/hide
Query:  AGRLLIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRVWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIISSSVDQTCKV
        +GRLL KKWHAHYRAVTCLVFSEDDSLL+SGSEDGC+RVW LITVFDDGWQREAKHLYEHSFT HNLP+TDI VVG+ GG NAIIISSSVD+TCKV
Subjt:  AGRLLIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRVWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIISSSVDQTCKV

XP_038898957.1 protein ROOT INITIATION DEFECTIVE 3 [Benincasa hispida]9.0e-4188.54Show/hide
Query:  AGRLLIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRVWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIISSSVDQTCKV
        +GRLL KKWHAHYRAVTCLVFSEDDSLLISGSEDGC+RVW L+TVFDDGWQREAKHLYEHSFT HNLP+TDI VVG+ GGSNAIIISSSVD+TCKV
Subjt:  AGRLLIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRVWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIISSSVDQTCKV

TrEMBL top hitse value%identityAlignment
A0A0A0KZT0 WD_REPEATS_REGION domain-containing protein1.7e-4087.5Show/hide
Query:  AGRLLIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRVWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIISSSVDQTCKV
        +GRLL KKWHAHYRAVTCLVFSEDDSLL+SGSEDGC+RVW LITVFDDGWQREAKHLYEHSFT HNLP+TDI VVG+ GG NAIIISSSVD+TCKV
Subjt:  AGRLLIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRVWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIISSSVDQTCKV

A0A1S3BU36 protein ROOT INITIATION DEFECTIVE 31.3e-4088.54Show/hide
Query:  AGRLLIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRVWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIISSSVDQTCKV
        +GRLL KKWHAHYRAVTCLVFSEDDSLLISGSEDGC+RVW LITVFDDGWQREAKHLYEHSFT HNLP+TDI VVG+ GG NAIIISSSVD+TCKV
Subjt:  AGRLLIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRVWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIISSSVDQTCKV

A0A5D3D9F7 Protein ROOT INITIATION DEFECTIVE 31.3e-4088.54Show/hide
Query:  AGRLLIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRVWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIISSSVDQTCKV
        +GRLL KKWHAHYRAVTCLVFSEDDSLLISGSEDGC+RVW LITVFDDGWQREAKHLYEHSFT HNLP+TDI VVG+ GG NAIIISSSVD+TCKV
Subjt:  AGRLLIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRVWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIISSSVDQTCKV

A0A6J1DDG0 protein ROOT INITIATION DEFECTIVE 3-like3.7e-4087.5Show/hide
Query:  AGRLLIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRVWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIISSSVDQTCKV
        +GRLL KKWH HYRAVTC+VFSEDDSLLISGSEDGCVRVW L+TVFDDGWQREAKHLYEHSFT HNLPITDI VVG+ GGSN+IIISSSVD+TCKV
Subjt:  AGRLLIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRVWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIISSSVDQTCKV

A0A6J1FMG7 protein ROOT INITIATION DEFECTIVE 31.4e-3985.42Show/hide
Query:  AGRLLIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRVWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIISSSVDQTCKV
        +GRLL+ KWHAHYRAVTCLVFSEDDSLLISGSEDGCVRVW L+ VFDDGWQRE+KHLYEHSFT HNLP+TDI V+G+ GGSNAIIISSSVD+TCKV
Subjt:  AGRLLIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRVWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIISSSVDQTCKV

SwissProt top hitse value%identityAlignment
A0A1L8HX76 WD repeat-containing protein 182.2e-1042.53Show/hide
Query:  HAHYRAVTCLVFSEDDSLLISGSEDGCVRVWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIISSSVDQTCKV
        ++HY+ VTCL F++D S +ISG++D  V VW L +V      R  +  Y   +++H+LPITD V  G  GG  A + +SS+DQT K+
Subjt:  HAHYRAVTCLVFSEDDSLLISGSEDGCVRVWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIISSSVDQTCKV

A8ILK1 Cilia- and flagella-associated protein 522.4e-0428.72Show/hide
Query:  AGRLLIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRVWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIISSSVDQTC
        +G+++     AH +AVT +  + D S ++SG E+G VRVW +                E S   H  P+  I + G G       +S+S D +C
Subjt:  AGRLLIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRVWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIISSSVDQTC

Q4PHV3 Pre-rRNA-processing protein IPI39.8e-0632.32Show/hide
Query:  LIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRVWPLITVFDDGWQREAK-HLYEH------SFTQHNLPITDIVVVGFGGGSNAIIISSSVDQTCKV
        L+  + AHYR+VT L ++ D + L++GSED  + VW L  +     Q  +     EH      +   HNL ITD+ +        A+++SSS D + K+
Subjt:  LIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRVWPLITVFDDGWQREAK-HLYEH------SFTQHNLPITDIVVVGFGGGSNAIIISSSVDQTCKV

Q6BMP5 Pre-rRNA-processing protein IPI32.1e-0835.35Show/hide
Query:  AGRLLIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRVW---PLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIISSSVDQTCKV
        +G LL  K  AHY+A+T + FS+  + L+SGS D    VW    LI+V++   +         SFT H+LPITD+ +   G  S+  + + S D T ++
Subjt:  AGRLLIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRVW---PLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIISSSVDQTCKV

Q9M3B4 Protein ROOT INITIATION DEFECTIVE 36.3e-2961.96Show/hide
Query:  LIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRVWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIISSSVDQTCKV
        L+KKWH HYR+VTCLVFS DDSLL+SGS+DG +RVW LI +FDD  +++   LYEH+F +H + +TDIV+    GG NA+IISSS D+TCKV
Subjt:  LIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRVWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIISSSVDQTCKV

Arabidopsis top hitse value%identityAlignment
AT1G15440.1 periodic tryptophan protein 25.5e-0428.26Show/hide
Query:  IKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRVWPLI--TVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIISSSVDQTCK
        I K   HY  V C+ +S D  LL +G++D  V+VW ++  T F              +FT+H   +T +  +      N  ++S+S+D T +
Subjt:  IKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRVWPLI--TVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIISSSVDQTCK

AT1G15440.2 periodic tryptophan protein 25.5e-0428.26Show/hide
Query:  IKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRVWPLI--TVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIISSSVDQTCK
        I K   HY  V C+ +S D  LL +G++D  V+VW ++  T F              +FT+H   +T +  +      N  ++S+S+D T +
Subjt:  IKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRVWPLI--TVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIISSSVDQTCK

AT2G47410.1 WD40/YVTN repeat-like-containing domain;Bromodomain6.5e-0530.77Show/hide
Query:  IKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRVWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIISSSVDQTCKV
        IKK   H  AV C +F      +I+GS+D  V++W + T            L   S   H   ITD+ V      +NA++ S+S D   +V
Subjt:  IKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRVWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIISSSVDQTCKV

AT2G47410.2 WD40/YVTN repeat-like-containing domain;Bromodomain6.5e-0530.77Show/hide
Query:  IKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRVWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIISSSVDQTCKV
        IKK   H  AV C +F      +I+GS+D  V++W + T            L   S   H   ITD+ V      +NA++ S+S D   +V
Subjt:  IKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRVWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIISSSVDQTCKV

AT3G49180.1 Transducin/WD40 repeat-like superfamily protein4.5e-3061.96Show/hide
Query:  LIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRVWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIISSSVDQTCKV
        L+KKWH HYR+VTCLVFS DDSLL+SGS+DG +RVW LI +FDD  +++   LYEH+F +H + +TDIV+    GG NA+IISSS D+TCKV
Subjt:  LIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRVWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIISSSVDQTCKV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCGGGTAGACTGCTAATTAAGAAATGGCATGCTCATTATAGGGCAGTTACTTGCCTGGTATTCTCTGAAGATGACTCCCTTTTAATTTCCGGTTCTGAAGATGGCTGTGT
TAGAGTTTGGCCTCTTATAACGGTATTTGATGACGGCTGGCAAAGGGAAGCAAAACATTTATATGAACATAGTTTCACCCAGCACAATCTGCCTATTACTGATATTGTTG
TTGTAGGTTTTGGAGGAGGATCCAATGCTATTATAATCTCTTCCTCCGTGGATCAGACTTGTAAGGTT
mRNA sequenceShow/hide mRNA sequence
GCGGGTAGACTGCTAATTAAGAAATGGCATGCTCATTATAGGGCAGTTACTTGCCTGGTATTCTCTGAAGATGACTCCCTTTTAATTTCCGGTTCTGAAGATGGCTGTGT
TAGAGTTTGGCCTCTTATAACGGTATTTGATGACGGCTGGCAAAGGGAAGCAAAACATTTATATGAACATAGTTTCACCCAGCACAATCTGCCTATTACTGATATTGTTG
TTGTAGGTTTTGGAGGAGGATCCAATGCTATTATAATCTCTTCCTCCGTGGATCAGACTTGTAAGGTT
Protein sequenceShow/hide protein sequence
AGRLLIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRVWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIISSSVDQTCKV