; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS008773 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS008773
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionprotein DCL homolog, chloroplastic
Genome locationscaffold4:3611799..3613703
RNA-Seq ExpressionMS008773
SyntenyMS008773
Gene Ontology termsGO:0009658 - chloroplast organization (biological process)
GO:1901259 - chloroplast rRNA processing (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR044673 - Protein DCL-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064386.1 protein DCL [Cucumis melo var. makuwa]1.3e-10986.67Show/hide
Query:  MAMASVSKPPPFPPFHSLNPSFLNSSPVILCFPTHPMTSLHPSIRALKTGPEGSRIRSHEEYSSDLLRKPVVPPAKDFARISEDDEGSEESGTDGEEEED
        MAMAS+    PFPPFHSLNP+F NSSP+ILCFPTHP+ S HPS RALKTGPEGSRIRSH+EYSSDLLRKPVVPPAKD A  SEDD+ SEESG D EEE D
Subjt:  MAMASVSKPPPFPPFHSLNPSFLNSSPVILCFPTHPMTSLHPSIRALKTGPEGSRIRSHEEYSSDLLRKPVVPPAKDFARISEDDEGSEESGTDGEEEED

Query:  WVDWEDKILEDTVPLVGFVRMVLHSGKYGSGDRLSPEHEKTILDRLLPYHPECEKKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLI
        WVDWEDKILEDTVPLVGFVRMVLH+GKY SGDRL PEHEKTIL+RLLPYHPE EKKIGCG+DYIT+GYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLI
Subjt:  WVDWEDKILEDTVPLVGFVRMVLHSGKYGSGDRLSPEHEKTILDRLLPYHPECEKKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLI

Query:  RKNYPLHAESFILRHFRRRRRNYRR
        RKNYPL+AESFILRHFRRRRRN RR
Subjt:  RKNYPLHAESFILRHFRRRRRNYRR

XP_004141259.1 protein DCL homolog, chloroplastic [Cucumis sativus]1.8e-10884.44Show/hide
Query:  MAMASVSKPPPFPPFHSLNPSFLNSSPVILCFPTHPMTSLHPSIRALKTGPEGSRIRSHEEYSSDLLRKPVVPPAKDFARISEDDEGSEESGTDGEEEED
        MAMAS+ KPPPFPPFHSLNP+F NSSP+ILCFPTHP+ S HPS RALKTGPEG R+RSH+EYSSDLLRKPV P AKD A  SEDD+ SEESG + EEE +
Subjt:  MAMASVSKPPPFPPFHSLNPSFLNSSPVILCFPTHPMTSLHPSIRALKTGPEGSRIRSHEEYSSDLLRKPVVPPAKDFARISEDDEGSEESGTDGEEEED

Query:  WVDWEDKILEDTVPLVGFVRMVLHSGKYGSGDRLSPEHEKTILDRLLPYHPECEKKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLI
        WVDWEDKILEDTVPLVGFVRMVLH+GKY +GDRL PEHEKTIL+RLLPYHPE EKKIGCG+DYIT+GYHPDFESSRCLFIVRKDGE+VDFSYWKCIKGLI
Subjt:  WVDWEDKILEDTVPLVGFVRMVLHSGKYGSGDRLSPEHEKTILDRLLPYHPECEKKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLI

Query:  RKNYPLHAESFILRHFRRRRRNYRR
        RKNYPL+AESFILRHFRRRRRN RR
Subjt:  RKNYPLHAESFILRHFRRRRRNYRR

XP_008452556.1 PREDICTED: protein DCL, chloroplastic [Cucumis melo]1.3e-10986.67Show/hide
Query:  MAMASVSKPPPFPPFHSLNPSFLNSSPVILCFPTHPMTSLHPSIRALKTGPEGSRIRSHEEYSSDLLRKPVVPPAKDFARISEDDEGSEESGTDGEEEED
        MAMAS+    PFPPFHSLNP+F NSSP+ILCFPTHP+ S HPS RALKTGPEGSRIRSH+EYSSDLLRKPVVPPAKD A  SEDD+ SEESG D EEE D
Subjt:  MAMASVSKPPPFPPFHSLNPSFLNSSPVILCFPTHPMTSLHPSIRALKTGPEGSRIRSHEEYSSDLLRKPVVPPAKDFARISEDDEGSEESGTDGEEEED

Query:  WVDWEDKILEDTVPLVGFVRMVLHSGKYGSGDRLSPEHEKTILDRLLPYHPECEKKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLI
        WVDWEDKILEDTVPLVGFVRMVLH+GKY SGDRL PEHEKTIL+RLLPYHPE EKKIGCG+DYIT+GYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLI
Subjt:  WVDWEDKILEDTVPLVGFVRMVLHSGKYGSGDRLSPEHEKTILDRLLPYHPECEKKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLI

Query:  RKNYPLHAESFILRHFRRRRRNYRR
        RKNYPL+AESFILRHFRRRRRN RR
Subjt:  RKNYPLHAESFILRHFRRRRRNYRR

XP_022133006.1 protein DCL homolog, chloroplastic [Momordica charantia]7.4e-12699.11Show/hide
Query:  MAMASVSKPPPFPPFHSLNPSFLNSSPVILCFPTHPMTSLHPSIRALKTGPEGSRIRSHEEYSSDLLRKPVVPPAKDFARISEDDEGSEESGTDGEEEED
        MAMASVSKPPPFPPFHSLNPSFLNSSPVILCFP HPMTSLHPSIRALKTGPEGSRIRSHEEYSSDLLRKPVVPPAKDFARISEDDEGSEESGTDGEEEED
Subjt:  MAMASVSKPPPFPPFHSLNPSFLNSSPVILCFPTHPMTSLHPSIRALKTGPEGSRIRSHEEYSSDLLRKPVVPPAKDFARISEDDEGSEESGTDGEEEED

Query:  WVDWEDKILEDTVPLVGFVRMVLHSGKYGSGDRLSPEHEKTILDRLLPYHPECEKKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLI
        WVDWEDKILEDTVPLVGFVRMVLHSGKYGSGDRLS EHEKTILDRLLPYHPECEKKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLI
Subjt:  WVDWEDKILEDTVPLVGFVRMVLHSGKYGSGDRLSPEHEKTILDRLLPYHPECEKKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLI

Query:  RKNYPLHAESFILRHFRRRRRNYR
        RKNYPLHAESFILRHFRRRRRNYR
Subjt:  RKNYPLHAESFILRHFRRRRRNYR

XP_038897137.1 protein DCL homolog, chloroplastic [Benincasa hispida]5.9e-11590.67Show/hide
Query:  MAMASVSKPPPFPPFHSLNPSFLNSSPVILCFPTHPMTSLHPSIRALKTGPEGSRIRSHEEYSSDLLRKPVVPPAKDFARISEDDEGSEESGTDGEEEED
        MAMAS+ KPPPF P HSLNP+F NSSPVILCFPT PMTS H S RALKTGPEGSRIRSHEEYSSDLLRKPVVPPA+D AR+SEDD+ SEESG D EEEED
Subjt:  MAMASVSKPPPFPPFHSLNPSFLNSSPVILCFPTHPMTSLHPSIRALKTGPEGSRIRSHEEYSSDLLRKPVVPPAKDFARISEDDEGSEESGTDGEEEED

Query:  WVDWEDKILEDTVPLVGFVRMVLHSGKYGSGDRLSPEHEKTILDRLLPYHPECEKKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLI
        WVDWEDKILEDTVPLVGFVRMVLHSGKYGSGDRL+PEHEKTILDRLLPYHPE EKKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLI
Subjt:  WVDWEDKILEDTVPLVGFVRMVLHSGKYGSGDRLSPEHEKTILDRLLPYHPECEKKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLI

Query:  RKNYPLHAESFILRHFRRRRRNYRR
        RK YPLHAESFILRHFRRRRRN+RR
Subjt:  RKNYPLHAESFILRHFRRRRRNYRR

TrEMBL top hitse value%identityAlignment
A0A0A0L2D0 Uncharacterized protein8.8e-10984.44Show/hide
Query:  MAMASVSKPPPFPPFHSLNPSFLNSSPVILCFPTHPMTSLHPSIRALKTGPEGSRIRSHEEYSSDLLRKPVVPPAKDFARISEDDEGSEESGTDGEEEED
        MAMAS+ KPPPFPPFHSLNP+F NSSP+ILCFPTHP+ S HPS RALKTGPEG R+RSH+EYSSDLLRKPV P AKD A  SEDD+ SEESG + EEE +
Subjt:  MAMASVSKPPPFPPFHSLNPSFLNSSPVILCFPTHPMTSLHPSIRALKTGPEGSRIRSHEEYSSDLLRKPVVPPAKDFARISEDDEGSEESGTDGEEEED

Query:  WVDWEDKILEDTVPLVGFVRMVLHSGKYGSGDRLSPEHEKTILDRLLPYHPECEKKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLI
        WVDWEDKILEDTVPLVGFVRMVLH+GKY +GDRL PEHEKTIL+RLLPYHPE EKKIGCG+DYIT+GYHPDFESSRCLFIVRKDGE+VDFSYWKCIKGLI
Subjt:  WVDWEDKILEDTVPLVGFVRMVLHSGKYGSGDRLSPEHEKTILDRLLPYHPECEKKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLI

Query:  RKNYPLHAESFILRHFRRRRRNYRR
        RKNYPL+AESFILRHFRRRRRN RR
Subjt:  RKNYPLHAESFILRHFRRRRRNYRR

A0A1S3BVA4 protein DCL, chloroplastic6.1e-11086.67Show/hide
Query:  MAMASVSKPPPFPPFHSLNPSFLNSSPVILCFPTHPMTSLHPSIRALKTGPEGSRIRSHEEYSSDLLRKPVVPPAKDFARISEDDEGSEESGTDGEEEED
        MAMAS+    PFPPFHSLNP+F NSSP+ILCFPTHP+ S HPS RALKTGPEGSRIRSH+EYSSDLLRKPVVPPAKD A  SEDD+ SEESG D EEE D
Subjt:  MAMASVSKPPPFPPFHSLNPSFLNSSPVILCFPTHPMTSLHPSIRALKTGPEGSRIRSHEEYSSDLLRKPVVPPAKDFARISEDDEGSEESGTDGEEEED

Query:  WVDWEDKILEDTVPLVGFVRMVLHSGKYGSGDRLSPEHEKTILDRLLPYHPECEKKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLI
        WVDWEDKILEDTVPLVGFVRMVLH+GKY SGDRL PEHEKTIL+RLLPYHPE EKKIGCG+DYIT+GYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLI
Subjt:  WVDWEDKILEDTVPLVGFVRMVLHSGKYGSGDRLSPEHEKTILDRLLPYHPECEKKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLI

Query:  RKNYPLHAESFILRHFRRRRRNYRR
        RKNYPL+AESFILRHFRRRRRN RR
Subjt:  RKNYPLHAESFILRHFRRRRRNYRR

A0A5A7VDC9 Protein DCL6.1e-11086.67Show/hide
Query:  MAMASVSKPPPFPPFHSLNPSFLNSSPVILCFPTHPMTSLHPSIRALKTGPEGSRIRSHEEYSSDLLRKPVVPPAKDFARISEDDEGSEESGTDGEEEED
        MAMAS+    PFPPFHSLNP+F NSSP+ILCFPTHP+ S HPS RALKTGPEGSRIRSH+EYSSDLLRKPVVPPAKD A  SEDD+ SEESG D EEE D
Subjt:  MAMASVSKPPPFPPFHSLNPSFLNSSPVILCFPTHPMTSLHPSIRALKTGPEGSRIRSHEEYSSDLLRKPVVPPAKDFARISEDDEGSEESGTDGEEEED

Query:  WVDWEDKILEDTVPLVGFVRMVLHSGKYGSGDRLSPEHEKTILDRLLPYHPECEKKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLI
        WVDWEDKILEDTVPLVGFVRMVLH+GKY SGDRL PEHEKTIL+RLLPYHPE EKKIGCG+DYIT+GYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLI
Subjt:  WVDWEDKILEDTVPLVGFVRMVLHSGKYGSGDRLSPEHEKTILDRLLPYHPECEKKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLI

Query:  RKNYPLHAESFILRHFRRRRRNYRR
        RKNYPL+AESFILRHFRRRRRN RR
Subjt:  RKNYPLHAESFILRHFRRRRRNYRR

A0A6J1BTU2 protein DCL homolog, chloroplastic3.6e-12699.11Show/hide
Query:  MAMASVSKPPPFPPFHSLNPSFLNSSPVILCFPTHPMTSLHPSIRALKTGPEGSRIRSHEEYSSDLLRKPVVPPAKDFARISEDDEGSEESGTDGEEEED
        MAMASVSKPPPFPPFHSLNPSFLNSSPVILCFP HPMTSLHPSIRALKTGPEGSRIRSHEEYSSDLLRKPVVPPAKDFARISEDDEGSEESGTDGEEEED
Subjt:  MAMASVSKPPPFPPFHSLNPSFLNSSPVILCFPTHPMTSLHPSIRALKTGPEGSRIRSHEEYSSDLLRKPVVPPAKDFARISEDDEGSEESGTDGEEEED

Query:  WVDWEDKILEDTVPLVGFVRMVLHSGKYGSGDRLSPEHEKTILDRLLPYHPECEKKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLI
        WVDWEDKILEDTVPLVGFVRMVLHSGKYGSGDRLS EHEKTILDRLLPYHPECEKKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLI
Subjt:  WVDWEDKILEDTVPLVGFVRMVLHSGKYGSGDRLSPEHEKTILDRLLPYHPECEKKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLI

Query:  RKNYPLHAESFILRHFRRRRRNYR
        RKNYPLHAESFILRHFRRRRRNYR
Subjt:  RKNYPLHAESFILRHFRRRRRNYR

A0A6J1IM57 protein DCL homolog, chloroplastic-like2.8e-10784.89Show/hide
Query:  MAMASVSKPPPFPPFHSLNPSFLNSSPVILCFPTHPMTSLHPSIRALKTGPEGSRIRSHEEYSSDLLRKPVVPPAKDFARISEDDEGSEESGTDGEEEED
        +AMAS+ KPPP  P HSLNP+ LN+SPVI+CF THPMTS HPSIRALKTGPEGSRIRSHEEYSSDLLRKPVVPPA D A  SED   SEESG   EEEE+
Subjt:  MAMASVSKPPPFPPFHSLNPSFLNSSPVILCFPTHPMTSLHPSIRALKTGPEGSRIRSHEEYSSDLLRKPVVPPAKDFARISEDDEGSEESGTDGEEEED

Query:  WVDWEDKILEDTVPLVGFVRMVLHSGKYGSGDRLSPEHEKTILDRLLPYHPECEKKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLI
        WVDWED+ILE+TVPLVGFVRMVLHSGKYGSGDRLSPEHEKTILDRLL YHPECEKKIGCGIDYITIGYHP+FE SRCLFIVRKDGELVDFSYWKC++GLI
Subjt:  WVDWEDKILEDTVPLVGFVRMVLHSGKYGSGDRLSPEHEKTILDRLLPYHPECEKKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLI

Query:  RKNYPLHAESFILRHFRRRRRNYRR
        RKNYPLHAESFILRHF+RRRR++ R
Subjt:  RKNYPLHAESFILRHFRRRRRNYRR

SwissProt top hitse value%identityAlignment
P85936 Protein DCL, chloroplastic (Fragment)5.7e-0481.82Show/hide
Query:  WVDWEDKILEDTVPLVGFVRMV
        WVDWED+IL+DTVPLV FVRM+
Subjt:  WVDWEDKILEDTVPLVGFVRMV

Q42463 Protein DCL, chloroplastic5.0e-6963.81Show/hide
Query:  NSSPV---ILCFPTHPMTSLHPSIR-----ALKTGPEGSRIRSHEEYSSDLLRKPVVPPAKDFARISED---DEGSEESGTDGEEEEDWVDWEDKILEDT
        NSSP+   +L  P+    S    +R     A+KTG EG  IRS    +++LLRKPV+    +    SE+   +E  +E G    + E WVDWED+ILEDT
Subjt:  NSSPV---ILCFPTHPMTSLHPSIR-----ALKTGPEGSRIRSHEEYSSDLLRKPVVPPAKDFARISED---DEGSEESGTDGEEEEDWVDWEDKILEDT

Query:  VPLVGFVRMVLHSGKYGSGDRLSPEHEKTILDRLLPYHPECEKKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLIRKNYPLHAESFI
        VPLVGFVRM+LHSGKY  GDRLSP+H++TIL RLLPYHPEC+KKIG G+DYIT+GYHPDFE+SRCLFIVRKDGE VDFSYWKCIKGLIRKNYPL+A+SFI
Subjt:  VPLVGFVRMVLHSGKYGSGDRLSPEHEKTILDRLLPYHPECEKKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLIRKNYPLHAESFI

Query:  LRHFRRRRRN
        LRHFR+RRRN
Subjt:  LRHFRRRRRN

Q5D869 DNA-directed RNA polymerase V subunit 11.9e-2037.19Show/hide
Query:  EDKILEDTVPLVGFVRMVLHSGKYGSGDRLSPEHEKTILDRLLPYHPECEKKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLIRKNY
        E ++L D  P++  +R ++H   Y  GD +S + +  +L+++L +HP+ E K+G G+D+IT+  H  F  SRC F+V  DG   DFSY K +   + K Y
Subjt:  EDKILEDTVPLVGFVRMVLHSGKYGSGDRLSPEHEKTILDRLLPYHPECEKKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLIRKNY

Query:  PLHAESFILRHFRRRRRNYRR
        P  AE FI ++F + R +  R
Subjt:  PLHAESFILRHFRRRRRNYRR

Q8L557 Protein EMBRYO DEFECTIVE 5146.7e-0530.25Show/hide
Query:  EDDEGSEESGTDGEEEEDW-VDWEDKILEDTVPLVGFVRMVLHSGKYGSGDRLSPEHEKTILDRLLPYHPECEKKIGCGIDYITIGYHPDFESSRCLFIV
        E++ G  +    GEEE+   V    K    +V +  +    LH   + +   ++      +LD +   H E EKKIG GI    +  HP ++ SRC F+V
Subjt:  EDDEGSEESGTDGEEEEDW-VDWEDKILEDTVPLVGFVRMVLHSGKYGSGDRLSPEHEKTILDRLLPYHPECEKKIGCGIDYITIGYHPDFESSRCLFIV

Query:  RKDGELVDFSYWKCIKGLI
        R+D    DFS+ KC+  ++
Subjt:  RKDGELVDFSYWKCIKGLI

Q9C642 Protein DCL homolog, chloroplastic2.6e-7361.78Show/hide
Query:  MAMASV--SKPPPFPPFHSLNPSF-LNSSPVILCFPTHPMTSLHPSIRALKTGPEGSRIRSHEEYSSDLLRKPVVPPAKDFARISEDDEGSEESGTDGEE
        M++AS+  S P   P F      F  +SSP+ L FP    TSL P +RAL+T  +G++I + E Y S+LLR+P +   +     SE++E  EE  ++G+E
Subjt:  MAMASV--SKPPPFPPFHSLNPSF-LNSSPVILCFPTHPMTSLHPSIRALKTGPEGSRIRSHEEYSSDLLRKPVVPPAKDFARISEDDEGSEESGTDGEE

Query:  EEDWVDWEDKILEDTVPLVGFVRMVLHSGKYGSGDRLSPEHEKTILDRLLPYHPECEKKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIK
           +VDWEDKILE TVPLVGFVRM+LHSGKY + DRLSPEHE+TI++ LLPYHPECEKKIGCGIDYI +G+HPDFESSRC+FIVRKDGE+VDFSYWKCIK
Subjt:  EEDWVDWEDKILEDTVPLVGFVRMVLHSGKYGSGDRLSPEHEKTILDRLLPYHPECEKKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIK

Query:  GLIRKNYPLHAESFILRHFRRRRRN
        GLI+K YPL+A+SFILRHFR+RR+N
Subjt:  GLIRKNYPLHAESFILRHFRRRRRN

Arabidopsis top hitse value%identityAlignment
AT1G45230.1 Protein of unknown function (DUF3223)1.8e-7461.78Show/hide
Query:  MAMASV--SKPPPFPPFHSLNPSF-LNSSPVILCFPTHPMTSLHPSIRALKTGPEGSRIRSHEEYSSDLLRKPVVPPAKDFARISEDDEGSEESGTDGEE
        M++AS+  S P   P F      F  +SSP+ L FP    TSL P +RAL+T  +G++I + E Y S+LLR+P +   +     SE++E  EE  ++G+E
Subjt:  MAMASV--SKPPPFPPFHSLNPSF-LNSSPVILCFPTHPMTSLHPSIRALKTGPEGSRIRSHEEYSSDLLRKPVVPPAKDFARISEDDEGSEESGTDGEE

Query:  EEDWVDWEDKILEDTVPLVGFVRMVLHSGKYGSGDRLSPEHEKTILDRLLPYHPECEKKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIK
           +VDWEDKILE TVPLVGFVRM+LHSGKY + DRLSPEHE+TI++ LLPYHPECEKKIGCGIDYI +G+HPDFESSRC+FIVRKDGE+VDFSYWKCIK
Subjt:  EEDWVDWEDKILEDTVPLVGFVRMVLHSGKYGSGDRLSPEHEKTILDRLLPYHPECEKKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIK

Query:  GLIRKNYPLHAESFILRHFRRRRRN
        GLI+K YPL+A+SFILRHFR+RR+N
Subjt:  GLIRKNYPLHAESFILRHFRRRRRN

AT1G45230.2 Protein of unknown function (DUF3223)1.6e-7361.33Show/hide
Query:  MAMASV--SKPPPFPPFHSLNPSF-LNSSPVILCFPTHPMTSLHPSIRALKTGPEGSRIRSHEEYSSDLLRKPVVPPAKDFARISEDDEGSEESGTDGEE
        M++AS+  S P   P F      F  +SSP+ L FP    TSL P +RAL+T  +G++I + E Y S+LLR+P +   +     SE++E  EE  ++G+E
Subjt:  MAMASV--SKPPPFPPFHSLNPSF-LNSSPVILCFPTHPMTSLHPSIRALKTGPEGSRIRSHEEYSSDLLRKPVVPPAKDFARISEDDEGSEESGTDGEE

Query:  EEDWVDWEDKILEDTVPLVGFVRMVLHSGKYGSGDRLSPEHEKTILDRLLPYHPECEKKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIK
           +VDWEDKILE TVPLVGFVRM+LHSGKY + DRLSPEHE+TI++ LLPYHPECEKKIGCGIDYI + +HPDFESSRC+FIVRKDGE+VDFSYWKCIK
Subjt:  EEDWVDWEDKILEDTVPLVGFVRMVLHSGKYGSGDRLSPEHEKTILDRLLPYHPECEKKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIK

Query:  GLIRKNYPLHAESFILRHFRRRRRN
        GLI+K YPL+A+SFILRHFR+RR+N
Subjt:  GLIRKNYPLHAESFILRHFRRRRRN

AT2G40030.1 nuclear RNA polymerase D1B1.4e-2137.19Show/hide
Query:  EDKILEDTVPLVGFVRMVLHSGKYGSGDRLSPEHEKTILDRLLPYHPECEKKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLIRKNY
        E ++L D  P++  +R ++H   Y  GD +S + +  +L+++L +HP+ E K+G G+D+IT+  H  F  SRC F+V  DG   DFSY K +   + K Y
Subjt:  EDKILEDTVPLVGFVRMVLHSGKYGSGDRLSPEHEKTILDRLLPYHPECEKKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLIRKNY

Query:  PLHAESFILRHFRRRRRNYRR
        P  AE FI ++F + R +  R
Subjt:  PLHAESFILRHFRRRRRNYRR

AT3G46630.1 Protein of unknown function (DUF3223)1.3e-3249.15Show/hide
Query:  WVDWEDKILEDTVPLVGFVRMVLHSGKYGSGDRLSPEHEKTILDRLLPYHPECEKKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLI
        W + E +IL D  P+    + +LHS +Y  G+RL  E EK ++++LLPYHP  + KIGCG+D+I +  HP F  SRCLF+VR DG  +DFSY KC++  +
Subjt:  WVDWEDKILEDTVPLVGFVRMVLHSGKYGSGDRLSPEHEKTILDRLLPYHPECEKKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLI

Query:  RKNYPLHAESFILRHFRR
        R  YP HAE FI  HF+R
Subjt:  RKNYPLHAESFILRHFRR

AT5G62440.1 Protein of unknown function (DUF3223)4.8e-0630.25Show/hide
Query:  EDDEGSEESGTDGEEEEDW-VDWEDKILEDTVPLVGFVRMVLHSGKYGSGDRLSPEHEKTILDRLLPYHPECEKKIGCGIDYITIGYHPDFESSRCLFIV
        E++ G  +    GEEE+   V    K    +V +  +    LH   + +   ++      +LD +   H E EKKIG GI    +  HP ++ SRC F+V
Subjt:  EDDEGSEESGTDGEEEEDW-VDWEDKILEDTVPLVGFVRMVLHSGKYGSGDRLSPEHEKTILDRLLPYHPECEKKIGCGIDYITIGYHPDFESSRCLFIV

Query:  RKDGELVDFSYWKCIKGLI
        R+D    DFS+ KC+  ++
Subjt:  RKDGELVDFSYWKCIKGLI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAGGGCATGGCCATGGCGTCTGTTTCGAAGCCACCGCCATTTCCGCCCTTTCACTCCCTAAATCCAAGCTTTCTCAACTCTTCACCAGTGATCTTATGTTTTCCTACGCA
CCCAATGACGTCGCTTCACCCCTCCATACGTGCCCTAAAGACTGGGCCGGAAGGCAGTAGAATTCGAAGCCACGAAGAATATAGCTCGGATTTGCTGCGGAAGCCGGTTG
TTCCACCGGCGAAGGACTTCGCCAGAATATCGGAGGATGACGAGGGCAGCGAGGAGAGTGGTACTGACGGCGAAGAGGAAGAGGATTGGGTTGATTGGGAGGACAAGATT
TTGGAGGATACCGTTCCTCTAGTTGGCTTTGTTAGGATGGTTCTTCACTCTGGAAAATATGGAAGTGGAGATAGATTAAGCCCGGAGCACGAGAAAACGATTCTTGACAG
GTTGCTTCCATACCATCCTGAATGTGAGAAGAAGATTGGATGTGGAATTGATTATATCACGATTGGATATCATCCTGATTTTGAAAGCTCAAGATGTTTATTCATAGTCA
GAAAAGATGGAGAGTTAGTCGATTTCTCATATTGGAAGTGCATTAAGGGTCTGATCAGAAAGAACTATCCCCTCCATGCTGAAAGCTTCATTCTTAGGCATTTTCGGCGA
CGTAGACGCAATTACCGTCGG
mRNA sequenceShow/hide mRNA sequence
AAGGGCATGGCCATGGCGTCTGTTTCGAAGCCACCGCCATTTCCGCCCTTTCACTCCCTAAATCCAAGCTTTCTCAACTCTTCACCAGTGATCTTATGTTTTCCTACGCA
CCCAATGACGTCGCTTCACCCCTCCATACGTGCCCTAAAGACTGGGCCGGAAGGCAGTAGAATTCGAAGCCACGAAGAATATAGCTCGGATTTGCTGCGGAAGCCGGTTG
TTCCACCGGCGAAGGACTTCGCCAGAATATCGGAGGATGACGAGGGCAGCGAGGAGAGTGGTACTGACGGCGAAGAGGAAGAGGATTGGGTTGATTGGGAGGACAAGATT
TTGGAGGATACCGTTCCTCTAGTTGGCTTTGTTAGGATGGTTCTTCACTCTGGAAAATATGGAAGTGGAGATAGATTAAGCCCGGAGCACGAGAAAACGATTCTTGACAG
GTTGCTTCCATACCATCCTGAATGTGAGAAGAAGATTGGATGTGGAATTGATTATATCACGATTGGATATCATCCTGATTTTGAAAGCTCAAGATGTTTATTCATAGTCA
GAAAAGATGGAGAGTTAGTCGATTTCTCATATTGGAAGTGCATTAAGGGTCTGATCAGAAAGAACTATCCCCTCCATGCTGAAAGCTTCATTCTTAGGCATTTTCGGCGA
CGTAGACGCAATTACCGTCGG
Protein sequenceShow/hide protein sequence
KGMAMASVSKPPPFPPFHSLNPSFLNSSPVILCFPTHPMTSLHPSIRALKTGPEGSRIRSHEEYSSDLLRKPVVPPAKDFARISEDDEGSEESGTDGEEEEDWVDWEDKI
LEDTVPLVGFVRMVLHSGKYGSGDRLSPEHEKTILDRLLPYHPECEKKIGCGIDYITIGYHPDFESSRCLFIVRKDGELVDFSYWKCIKGLIRKNYPLHAESFILRHFRR
RRRNYRR