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MS008780 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS008780
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCalcium-binding EF-hand
Genome locationscaffold4:3669640..3669888
RNA-Seq ExpressionMS008780
SyntenyMS008780
Gene Ontology termsGO:0005509 - calcium ion binding (molecular function)
InterPro domainsIPR002048 - EF-hand domain
IPR011992 - EF-hand domain pair
IPR018247 - EF-Hand 1, calcium-binding site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064378.1 putative calcium-binding protein CML10 [Cucumis melo var. makuwa]2.4e-2672.5Show/hide
Query:  KSKPKAASSEYGYSEKQLREIFKEMDTNEDGGLGLYELKNALRRLDAEMPVHLAFKALCYADQNGDGKLGQDEIDQFIKY
        KS  +A SSE  YS K+LR+IF +MDTNEDGGLGL+E+KNAL++LDAEMPVHLA+ ALCYAD+N DGKLG++EIDQF+KY
Subjt:  KSKPKAASSEYGYSEKQLREIFKEMDTNEDGGLGLYELKNALRRLDAEMPVHLAFKALCYADQNGDGKLGQDEIDQFIKY

KAG6608479.1 hypothetical protein SDJN03_01821, partial [Cucurbita argyrosperma subsp. sororia]9.2e-2675Show/hide
Query:  KSKPKAASSEYGYSEKQLREIFKEMDTNEDGGLGLYELKNALRRLDAEMPVHLAFKALCYADQNGDGKLGQDEIDQFIKY
        KSK  AA SE GYS K+LREIF +MDTNEDGGLGL+E+K AL++LDAE PVHLAFKALC +D+N DGKLG+DEID+FIKY
Subjt:  KSKPKAASSEYGYSEKQLREIFKEMDTNEDGGLGLYELKNALRRLDAEMPVHLAFKALCYADQNGDGKLGQDEIDQFIKY

KAG7024250.1 hypothetical protein SDJN02_13064, partial [Cucurbita argyrosperma subsp. argyrosperma]1.6e-2266.67Show/hide
Query:  KPKAASSEYGYSEKQLREIFKEMDTNEDGGLGLYELKNALRRLDAEMPVHLAFKALCYADQNGDGKLGQDEIDQFIKY
        +PK  +S+  YS K+L+EIF +MDTNEDGGLGL+E+KNAL++LDAE P+HLA+KALC+AD+N DGKLG++EID+F+KY
Subjt:  KPKAASSEYGYSEKQLREIFKEMDTNEDGGLGLYELKNALRRLDAEMPVHLAFKALCYADQNGDGKLGQDEIDQFIKY

KAG7037807.1 hypothetical protein SDJN02_01438, partial [Cucurbita argyrosperma subsp. argyrosperma]9.2e-2675Show/hide
Query:  KSKPKAASSEYGYSEKQLREIFKEMDTNEDGGLGLYELKNALRRLDAEMPVHLAFKALCYADQNGDGKLGQDEIDQFIKY
        KSK  AA SE GYS K+LREIF +MDTNEDGGLGL+E+K AL++LDAE PVHLAFKALC +D+N DGKLG+DEID+FIKY
Subjt:  KSKPKAASSEYGYSEKQLREIFKEMDTNEDGGLGLYELKNALRRLDAEMPVHLAFKALCYADQNGDGKLGQDEIDQFIKY

KGN55187.1 hypothetical protein Csa_012728 [Cucumis sativus]7.8e-2570Show/hide
Query:  KSKPKAASSEYGYSEKQLREIFKEMDTNEDGGLGLYELKNALRRLDAEMPVHLAFKALCYADQNGDGKLGQDEIDQFIKY
        KS     SSE  YS K+LR+IF +MDTNEDGGLGL+E+KNAL++LDAEMPVHLA+ ALC+AD+N DGKLG++EIDQF+KY
Subjt:  KSKPKAASSEYGYSEKQLREIFKEMDTNEDGGLGLYELKNALRRLDAEMPVHLAFKALCYADQNGDGKLGQDEIDQFIKY

TrEMBL top hitse value%identityAlignment
A0A0A0L3J7 Uncharacterized protein3.8e-2570Show/hide
Query:  KSKPKAASSEYGYSEKQLREIFKEMDTNEDGGLGLYELKNALRRLDAEMPVHLAFKALCYADQNGDGKLGQDEIDQFIKY
        KS     SSE  YS K+LR+IF +MDTNEDGGLGL+E+KNAL++LDAEMPVHLA+ ALC+AD+N DGKLG++EIDQF+KY
Subjt:  KSKPKAASSEYGYSEKQLREIFKEMDTNEDGGLGLYELKNALRRLDAEMPVHLAFKALCYADQNGDGKLGQDEIDQFIKY

A0A5D3D9N2 Putative calcium-binding protein CML101.2e-2672.5Show/hide
Query:  KSKPKAASSEYGYSEKQLREIFKEMDTNEDGGLGLYELKNALRRLDAEMPVHLAFKALCYADQNGDGKLGQDEIDQFIKY
        KS  +A SSE  YS K+LR+IF +MDTNEDGGLGL+E+KNAL++LDAEMPVHLA+ ALCYAD+N DGKLG++EIDQF+KY
Subjt:  KSKPKAASSEYGYSEKQLREIFKEMDTNEDGGLGLYELKNALRRLDAEMPVHLAFKALCYADQNGDGKLGQDEIDQFIKY

A0A5J5B553 Uncharacterized protein1.4e-0846.27Show/hide
Query:  SEKQLREIFKEMDTNEDGGLGLYELKNALRRLDAEMPVHLAFKALCYADQNGDGKLGQDEIDQFIKY
        ++ QL+ IFK+ DTN+DG L   ELK A R L A +P + A +ALC+AD NGDG + + E+   + Y
Subjt:  SEKQLREIFKEMDTNEDGGLGLYELKNALRRLDAEMPVHLAFKALCYADQNGDGKLGQDEIDQFIKY

A0A6A1UYS0 Putative calcium-binding protein CML101.9e-0845.59Show/hide
Query:  YSEKQLREIFKEMDTNEDGGLGLYELKNALRRLDAEMPVHLAFKALCYADQNGDGKLGQDEIDQFIKY
        Y+E+QLR +FK  DTN DG L   EL+NA R L +      AF+A+ +AD NGDG++ + E+D  ++Y
Subjt:  YSEKQLREIFKEMDTNEDGGLGLYELKNALRRLDAEMPVHLAFKALCYADQNGDGKLGQDEIDQFIKY

A0A6A6NGV9 Uncharacterized protein3.8e-0940.51Show/hide
Query:  SKPKAASSEYGYSEKQLREIFKEMDTNEDGGLGLYELKNALRRLDAEMPVHLAFKALCYADQNGDGKLGQDEIDQFIKY
        S PK+ + +  ++E QL+ +FKE D N DG L   E+K A ++L +  P     ++L +AD NGDG +G DE+D+ +KY
Subjt:  SKPKAASSEYGYSEKQLREIFKEMDTNEDGGLGLYELKNALRRLDAEMPVHLAFKALCYADQNGDGKLGQDEIDQFIKY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTCCTTGCAAAATCGAAGCCGAAGGCCGCGTCGTCGGAGTACGGCTACTCGGAGAAGCAACTGAGGGAGATATTCAAGGAGATGGACACCAATGAAGACGGAGGATTGGG
ATTGTACGAGCTCAAGAACGCCTTGAGACGGTTGGACGCTGAAATGCCTGTTCATCTTGCTTTCAAGGCGCTCTGCTACGCCGATCAGAACGGAGACGGAAAACTCGGCC
AGGACGAGATCGATCAGTTCATCAAGTAT
mRNA sequenceShow/hide mRNA sequence
CTCCTTGCAAAATCGAAGCCGAAGGCCGCGTCGTCGGAGTACGGCTACTCGGAGAAGCAACTGAGGGAGATATTCAAGGAGATGGACACCAATGAAGACGGAGGATTGGG
ATTGTACGAGCTCAAGAACGCCTTGAGACGGTTGGACGCTGAAATGCCTGTTCATCTTGCTTTCAAGGCGCTCTGCTACGCCGATCAGAACGGAGACGGAAAACTCGGCC
AGGACGAGATCGATCAGTTCATCAAGTAT
Protein sequenceShow/hide protein sequence
LLAKSKPKAASSEYGYSEKQLREIFKEMDTNEDGGLGLYELKNALRRLDAEMPVHLAFKALCYADQNGDGKLGQDEIDQFIKY