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MS008781 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS008781
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCalcium-binding EF-hand
Genome locationscaffold4:3675004..3675294
RNA-Seq ExpressionMS008781
SyntenyMS008781
Gene Ontology termsGO:0005509 - calcium ion binding (molecular function)
InterPro domainsIPR002048 - EF-hand domain
IPR011992 - EF-hand domain pair
IPR018247 - EF-Hand 1, calcium-binding site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064377.1 Calcium-binding EF-hand [Cucumis melo var. makuwa]1.3e-3174.23Show/hide
Query:  MAMRNFFGGGLSDYKRSPVPFTREQLRAIFLKHDENGDGRLSRLELKSAFDFFGSNWSSFRARRCLAAADSDGDGYVTLDELDCLLDYAVSCDYAIL
        MA+   F  G+SDYKR PVPF+R+QLR IFLKHD +GDGRLSRLELKSAFD  GSNWS FRAR+ L AAD+DGDGYVTLDELD LLDYAV  +YAI+
Subjt:  MAMRNFFGGGLSDYKRSPVPFTREQLRAIFLKHDENGDGRLSRLELKSAFDFFGSNWSSFRARRCLAAADSDGDGYVTLDELDCLLDYAVSCDYAIL

KAG6591371.1 putative calcium-binding protein CML10, partial [Cucurbita argyrosperma subsp. sororia]7.0e-3377.08Show/hide
Query:  AMRNFFGGGLSDYKRSPVPFTREQLRAIFLKHDENGDGRLSRLELKSAFDFFGSNWSSFRARRCLAAADSDGDGYVTLDELDCLLDYAVSCDYAIL
        AM   F  G+SDYKR PVPF+REQLR IFLKHD +GDGRLSRLELKSAFD  GSNWS FRAR+ L AADSDGDGYVTLDELD LLDY+V C+YAI+
Subjt:  AMRNFFGGGLSDYKRSPVPFTREQLRAIFLKHDENGDGRLSRLELKSAFDFFGSNWSSFRARRCLAAADSDGDGYVTLDELDCLLDYAVSCDYAIL

KAG6608480.1 putative calcium-binding protein CML10, partial [Cucurbita argyrosperma subsp. sororia]9.1e-3376.09Show/hide
Query:  FFGGGLSDYKRSPVPFTREQLRAIFLKHDENGDGRLSRLELKSAFDFFGSNWSSFRARRCLAAADSDGDGYVTLDELDCLLDYAVSCDYAIL
        FF  G+ DYKR PVPFT+EQLR IFL+HD +GDGRLSRLELK+AF+  GSNWS FRAR+CL AADS+GDGYVTLDELD LLDYAV C+YAI+
Subjt:  FFGGGLSDYKRSPVPFTREQLRAIFLKHDENGDGRLSRLELKSAFDFFGSNWSSFRARRCLAAADSDGDGYVTLDELDCLLDYAVSCDYAIL

KAG7020569.1 hypothetical protein SDJN02_17255, partial [Cucurbita argyrosperma subsp. argyrosperma]3.5e-1650.59Show/hide
Query:  SDYKRSPVPFTREQLRAIFLKHDENGDGRLSRLELKSAFDFFGSNWSSFRARRCLAAADSDGDGYVTLDELDCLLDYAVSCDYAI
        ++YKR  VPFT EQL AIF  HD +GDG+LS+ ELK AF++ GS +SSFR +  L AAD++GDG++++DE++ L+ Y     Y +
Subjt:  SDYKRSPVPFTREQLRAIFLKHDENGDGRLSRLELKSAFDFFGSNWSSFRARRCLAAADSDGDGYVTLDELDCLLDYAVSCDYAI

KGN55186.1 hypothetical protein Csa_012423 [Cucumis sativus]2.0e-3274.23Show/hide
Query:  MAMRNFFGGGLSDYKRSPVPFTREQLRAIFLKHDENGDGRLSRLELKSAFDFFGSNWSSFRARRCLAAADSDGDGYVTLDELDCLLDYAVSCDYAIL
        MA+   F  G+SDYKR PVPF+R+QLR IFLKHD +GDGRLSRLELKSAF+  GSNWS FRAR+ L AAD+DGDGYVTLDELD LLDYAV C+YAI+
Subjt:  MAMRNFFGGGLSDYKRSPVPFTREQLRAIFLKHDENGDGRLSRLELKSAFDFFGSNWSSFRARRCLAAADSDGDGYVTLDELDCLLDYAVSCDYAIL

TrEMBL top hitse value%identityAlignment
A0A0A0L4V0 Uncharacterized protein9.8e-3374.23Show/hide
Query:  MAMRNFFGGGLSDYKRSPVPFTREQLRAIFLKHDENGDGRLSRLELKSAFDFFGSNWSSFRARRCLAAADSDGDGYVTLDELDCLLDYAVSCDYAIL
        MA+   F  G+SDYKR PVPF+R+QLR IFLKHD +GDGRLSRLELKSAF+  GSNWS FRAR+ L AAD+DGDGYVTLDELD LLDYAV C+YAI+
Subjt:  MAMRNFFGGGLSDYKRSPVPFTREQLRAIFLKHDENGDGRLSRLELKSAFDFFGSNWSSFRARRCLAAADSDGDGYVTLDELDCLLDYAVSCDYAIL

A0A2N9FYQ0 Uncharacterized protein1.1e-1546.07Show/hide
Query:  GGGLSDYKRSPVPFTREQLRAIFLKHDENGDGRLSRLELKSAFDFFGSNWSSFRARRCLAAADSDGDGYVTLDELDCLLDYAVSCDYAI
        G  +  +KR+ +PFT EQL  IF  HD +GDG+LS+ E+K AF + GS W ++RA + +  AD+D DGY+  +EL  L+ YA+ C Y I
Subjt:  GGGLSDYKRSPVPFTREQLRAIFLKHDENGDGRLSRLELKSAFDFFGSNWSSFRARRCLAAADSDGDGYVTLDELDCLLDYAVSCDYAI

A0A5A7VBH2 Calcium-binding EF-hand6.4e-3274.23Show/hide
Query:  MAMRNFFGGGLSDYKRSPVPFTREQLRAIFLKHDENGDGRLSRLELKSAFDFFGSNWSSFRARRCLAAADSDGDGYVTLDELDCLLDYAVSCDYAIL
        MA+   F  G+SDYKR PVPF+R+QLR IFLKHD +GDGRLSRLELKSAFD  GSNWS FRAR+ L AAD+DGDGYVTLDELD LLDYAV  +YAI+
Subjt:  MAMRNFFGGGLSDYKRSPVPFTREQLRAIFLKHDENGDGRLSRLELKSAFDFFGSNWSSFRARRCLAAADSDGDGYVTLDELDCLLDYAVSCDYAIL

A0A6J5WAU8 Uncharacterized protein3.2e-1548.19Show/hide
Query:  YKRSPVPFTREQLRAIFLKHDENGDGRLSRLELKSAFDFFGSNWSSFRARRCLAAADSDGDGYVTLDELDCLLDYAVSCDYAI
        Y++  +P+T+EQ+ A F + D++GDGR+S+ ELK+AFD FGS WSSFRA R L  AD++ DGY++ +E   +++YA+ C Y +
Subjt:  YKRSPVPFTREQLRAIFLKHDENGDGRLSRLELKSAFDFFGSNWSSFRARRCLAAADSDGDGYVTLDELDCLLDYAVSCDYAI

A0A7N2KRS3 Uncharacterized protein1.1e-1549.4Show/hide
Query:  YKRSPVPFTREQLRAIFLKHDENGDGRLSRLELKSAFDFFGSNWSSFRARRCLAAADSDGDGYVTLDELDCLLDYAVSCDYAI
        +KR+ VPF  +QL  IF  HD +GDG+LSR ELK+AF + GS W ++R  + L  AD++ DGY+T DEL  L++YA+ C Y +
Subjt:  YKRSPVPFTREQLRAIFLKHDENGDGRLSRLELKSAFDFFGSNWSSFRARRCLAAADSDGDGYVTLDELDCLLDYAVSCDYAI

SwissProt top hitse value%identityAlignment
O64943 Polcalcin Jun o 24.9e-0540.35Show/hide
Query:  QLRAIFLKHDENGDGRLSRLELKSAFDFFGSNWSSFRARRCLAAADSDGDGYVTLDE
        +L  +F K D NGDG++S  EL       GS+      +  +  AD+DGDGYV+L E
Subjt:  QLRAIFLKHDENGDGRLSRLELKSAFDFFGSNWSSFRARRCLAAADSDGDGYVTLDE

Q6L4D4 Probable calcium-binding protein CML158.9e-0741.94Show/hide
Query:  PFTREQLRAIFLKHDENGDGRLSRLELKSAFDFFGSNWSSFRARRCLAAADSDGDGYVTLDE
        P   ++   +F K D NGDGR+SR EL + F   G   +     R +  ADSDGDGY++L E
Subjt:  PFTREQLRAIFLKHDENGDGRLSRLELKSAFDFFGSNWSSFRARRCLAAADSDGDGYVTLDE

Q8RZB5 Probable calcium-binding protein CML108.6e-1042.31Show/hide
Query:  GGGLSDYKRSPVPFTREQLRAIFLKHDENGDGRLSRLELKSAFDFFGSNWSSFRARRCLAAADSDGDGYVTLDELDCL
        GGG      SP P   E++  +F K D NGDGR+SR EL + F+  G   +     R +A AD+DGDG+++LDE   L
Subjt:  GGGLSDYKRSPVPFTREQLRAIFLKHDENGDGRLSRLELKSAFDFFGSNWSSFRARRCLAAADSDGDGYVTLDELDCL

Q9C9U8 Probable calcium-binding protein CML263.7e-0533.8Show/hide
Query:  LSDYKRSPVPFTREQLRAIFLKHDENGDGRLSRLELKSAFDFFGSNWSSFRARRCLAAADSDGDGYVTLDE
        L    +S  P T  +L+ +F K D NGDG++S  EL + F   G++++     R L   D D DG++  +E
Subjt:  LSDYKRSPVPFTREQLRAIFLKHDENGDGRLSRLELKSAFDFFGSNWSSFRARRCLAAADSDGDGYVTLDE

Q9LE22 Probable calcium-binding protein CML275.2e-0740.32Show/hide
Query:  EQLRAIFLKHDENGDGRLSRLELKSAFDFFGSNWSSFRARRCLAAADSDGDGYVTLDELDCL
        E+L+ +F + D NGDG++S LEL   F   G++++     R L   D+D DGY+ LDE   L
Subjt:  EQLRAIFLKHDENGDGRLSRLELKSAFDFFGSNWSSFRARRCLAAADSDGDGYVTLDELDCL

Arabidopsis top hitse value%identityAlignment
AT1G18210.1 Calcium-binding EF-hand family protein3.7e-0840.32Show/hide
Query:  EQLRAIFLKHDENGDGRLSRLELKSAFDFFGSNWSSFRARRCLAAADSDGDGYVTLDELDCL
        E+L+ +F + D NGDG++S LEL   F   G++++     R L   D+D DGY+ LDE   L
Subjt:  EQLRAIFLKHDENGDGRLSRLELKSAFDFFGSNWSSFRARRCLAAADSDGDGYVTLDELDCL

AT1G18210.2 Calcium-binding EF-hand family protein3.7e-0840.32Show/hide
Query:  EQLRAIFLKHDENGDGRLSRLELKSAFDFFGSNWSSFRARRCLAAADSDGDGYVTLDELDCL
        E+L+ +F + D NGDG++S LEL   F   G++++     R L   D+D DGY+ LDE   L
Subjt:  EQLRAIFLKHDENGDGRLSRLELKSAFDFFGSNWSSFRARRCLAAADSDGDGYVTLDELDCL

AT1G66400.1 calmodulin like 232.5e-0432.26Show/hide
Query:  EQLRAIFLKHDENGDGRLSRLELKSAFDFFGSNWSSFRARRCLAAADSDGDGYVTLDELDCL
        E ++ +F + D+N DG++S  ELK        N S    +  +   D DG+G++ LDE   L
Subjt:  EQLRAIFLKHDENGDGRLSRLELKSAFDFFGSNWSSFRARRCLAAADSDGDGYVTLDELDCL

AT1G73630.1 EF hand calcium-binding protein family2.7e-0633.8Show/hide
Query:  LSDYKRSPVPFTREQLRAIFLKHDENGDGRLSRLELKSAFDFFGSNWSSFRARRCLAAADSDGDGYVTLDE
        L    +S  P T  +L+ +F K D NGDG++S  EL + F   G++++     R L   D D DG++  +E
Subjt:  LSDYKRSPVPFTREQLRAIFLKHDENGDGRLSRLELKSAFDFFGSNWSSFRARRCLAAADSDGDGYVTLDE

AT5G57190.1 phosphatidylserine decarboxylase 23.3e-0437.68Show/hide
Query:  PVPFTREQLRAIFLKHDENGDGRLSRLELKSAFDFFGSNWSSFRARRCLAAADSDGDGYVTLDELDCLL
        PV   R   + I    D N DG+LS  E       FG+  ++ +      AAD +GDG VT+DEL  LL
Subjt:  PVPFTREQLRAIFLKHDENGDGRLSRLELKSAFDFFGSNWSSFRARRCLAAADSDGDGYVTLDELDCLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGATGAGGAATTTCTTCGGCGGCGGCCTCAGCGATTACAAGAGATCTCCAGTTCCTTTCACCAGAGAGCAGCTGCGGGCTATTTTCCTGAAGCACGACGAAAACGG
CGACGGCCGACTTTCGCGGCTGGAATTGAAATCGGCCTTCGATTTCTTCGGATCCAACTGGAGCAGTTTCAGAGCCCGCCGGTGTCTCGCCGCCGCCGATTCCGACGGCG
ATGGCTACGTTACTCTTGACGAACTCGATTGCCTTCTTGATTACGCTGTAAGCTGCGATTACGCTATACTT
mRNA sequenceShow/hide mRNA sequence
ATGGCGATGAGGAATTTCTTCGGCGGCGGCCTCAGCGATTACAAGAGATCTCCAGTTCCTTTCACCAGAGAGCAGCTGCGGGCTATTTTCCTGAAGCACGACGAAAACGG
CGACGGCCGACTTTCGCGGCTGGAATTGAAATCGGCCTTCGATTTCTTCGGATCCAACTGGAGCAGTTTCAGAGCCCGCCGGTGTCTCGCCGCCGCCGATTCCGACGGCG
ATGGCTACGTTACTCTTGACGAACTCGATTGCCTTCTTGATTACGCTGTAAGCTGCGATTACGCTATACTT
Protein sequenceShow/hide protein sequence
MAMRNFFGGGLSDYKRSPVPFTREQLRAIFLKHDENGDGRLSRLELKSAFDFFGSNWSSFRARRCLAAADSDGDGYVTLDELDCLLDYAVSCDYAIL