CuGenDBv2

Gene ID	MS008808
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	50S ribosomal protein L2, chloroplastic
Genome location	scaffold4:3832606..3832830
RNA-Seq Expression	MS008808
Synteny	MS008808
Gene Ontology terms	GO:0002181 - cytoplasmic translation (biological process) GO:0005739 - mitochondrion (cellular component) GO:0009507 - chloroplast (cellular component) GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0016740 - transferase activity (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR002171 - Ribosomal protein L2 IPR012340 - Nucleic acid-binding, OB-fold IPR022666 - Ribosomal Proteins L2, RNA binding domain

Homology

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GenBank top hits

e value

%identity

Alignment

AJO25152.1 ribosomal protein L2 [Solanum lycopersicum]

9.8e-35

98.67

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Query:  LYRKIDFRWNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
        LYRKIDFR NEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
Subjt:  LYRKIDFRWNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV

QHE65617.1 ribosomal protein L2 [Nitraria roborowskii]

9.8e-35

98.67

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Query:  LYRKIDFRWNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
        LYRKIDFR NEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
Subjt:  LYRKIDFRWNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV

QKG63330.1 ribosomal protein L2 [Streptocarpus ionanthus subsp. rupicola]

9.8e-35

98.67

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Query:  LYRKIDFRWNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
        LYRKIDFR NEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
Subjt:  LYRKIDFRWNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV

YP_009253112.1 ribosomal protein L2 [Iochroma ellipticum]

9.8e-35

98.67

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Query:  LYRKIDFRWNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
        LYRKIDFR NEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
Subjt:  LYRKIDFRWNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV

YP_009569066.1 ribosomal protein L2 [Ancistrocladus tectorius]

9.8e-35

98.67

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Query:  LYRKIDFRWNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
        LYRKIDFR NEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
Subjt:  LYRKIDFRWNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV

TrEMBL top hits

e value

%identity

Alignment

A0A5P8HA57 50S ribosomal protein L2, chloroplastic

4.8e-35

98.67

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Query:  LYRKIDFRWNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
        LYRKIDFR NEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
Subjt:  LYRKIDFRWNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV

A0A6B9QGQ4 50S ribosomal protein L2, chloroplastic

4.8e-35

98.67

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Query:  LYRKIDFRWNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
        LYRKIDFR NEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
Subjt:  LYRKIDFRWNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV

A0A6H1YHE2 50S ribosomal protein L2, chloroplastic

4.8e-35

98.67

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Query:  LYRKIDFRWNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
        LYRKIDFR NEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
Subjt:  LYRKIDFRWNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV

A0A7S8HPY4 Ribosomal protein L2

4.8e-35

98.67

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Query:  LYRKIDFRWNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
        LYRKIDFR NEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
Subjt:  LYRKIDFRWNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV

A0A7T7D7D8 Ribosomal protein L2

4.8e-35

98.67

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Query:  LYRKIDFRWNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
        LYRKIDFR NEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
Subjt:  LYRKIDFRWNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV

SwissProt top hits

e value

%identity

Alignment

B1A976 50S ribosomal protein L2, chloroplastic

2.4e-36

97.26

Show/hide

Query:  LYRKIDFRWNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS
        LYRKIDFR NEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL+
Subjt:  LYRKIDFRWNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS

Q09MB2 50S ribosomal protein L2, chloroplastic

2.4e-36

97.26

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Query:  LYRKIDFRWNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS
        LYRKIDFR NEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL+
Subjt:  LYRKIDFRWNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS

Q4VZK5 50S ribosomal protein L2, chloroplastic

2.4e-36

97.26

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Query:  LYRKIDFRWNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS
        LYRKIDFR NEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL+
Subjt:  LYRKIDFRWNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS

Q8S8U0 50S ribosomal protein L2-B, chloroplastic

2.4e-36

97.26

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Query:  LYRKIDFRWNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS
        LYRKIDFR NEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL+
Subjt:  LYRKIDFRWNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS

Q8S8V3 50S ribosomal protein L2-A, chloroplastic

2.4e-36

97.26

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Query:  LYRKIDFRWNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS
        LYRKIDFR NEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL+
Subjt:  LYRKIDFRWNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS

Arabidopsis top hits

e value

%identity

Alignment

ATCG00830.1 ribosomal protein L2

8.6e-37

95.89

Show/hide

Query:  LYRKIDFRWNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS
        LYRKIDFR N KDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL+
Subjt:  LYRKIDFRWNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS

ATCG01310.1 ribosomal protein L2

8.6e-37

95.89

Show/hide

Query:  LYRKIDFRWNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS
        LYRKIDFR N KDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL+
Subjt:  LYRKIDFRWNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS

Sequences

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CDS sequence

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CTATACCGTAAAATCGATTTTCGATGGAATGAAAAAGACATATATGGTAGAATCGTAACCATAGAATACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGG
GGATGGTGAGAAAAGATATATTTTACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTG
CGGTT

mRNA sequence

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Protein sequence

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LYRKIDFRWNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV

MS008808 (gene) of Bitter gourd (TR) v1 genome