; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS008824 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS008824
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g19290
Genome locationscaffold4:4052740..4052928
RNA-Seq ExpressionMS008824
SyntenyMS008824
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6608516.1 putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]8.0e-1471.43Show/hide
Query:  MPRYFPTSVAHQFYCLFHRKSLHVSRSLQWKLRDELKLTQPDLVERISRLLVLRRFDALAKLS
        M R+FPTS+   + CL  RKS+HVS  LQWK RDELKL Q DLV+RISRLLVLRR DALAKLS
Subjt:  MPRYFPTSVAHQFYCLFHRKSLHVSRSLQWKLRDELKLTQPDLVERISRLLVLRRFDALAKLS

XP_022140720.1 putative pentatricopeptide repeat-containing protein At1g19290 [Momordica charantia]7.7e-2595.24Show/hide
Query:  MPRYFPTSVAHQFYCLFHRKSLHVSRSLQWKLRDELKLTQPDLVERISRLLVLRRFDALAKLS
        MPRYFPTSVAHQFYCL HRKSLHVSRSLQWKLRDELKLTQPDLVERISR+LVLRRFDAL KLS
Subjt:  MPRYFPTSVAHQFYCLFHRKSLHVSRSLQWKLRDELKLTQPDLVERISRLLVLRRFDALAKLS

XP_022940949.1 putative pentatricopeptide repeat-containing protein At1g19290 [Cucurbita moschata]8.0e-1471.43Show/hide
Query:  MPRYFPTSVAHQFYCLFHRKSLHVSRSLQWKLRDELKLTQPDLVERISRLLVLRRFDALAKLS
        M R+FPTS+   + CL  RKS+HVS  LQWK RDELKL Q DLV+RISRLLVLRR DALAKLS
Subjt:  MPRYFPTSVAHQFYCLFHRKSLHVSRSLQWKLRDELKLTQPDLVERISRLLVLRRFDALAKLS

XP_022981984.1 putative pentatricopeptide repeat-containing protein At1g19290 [Cucurbita maxima]3.6e-1471.43Show/hide
Query:  MPRYFPTSVAHQFYCLFHRKSLHVSRSLQWKLRDELKLTQPDLVERISRLLVLRRFDALAKLS
        M R+FPTS+   + CL  RKS+HVS +LQWK RDELKL Q DLV+RISRLLVLRR DALAKLS
Subjt:  MPRYFPTSVAHQFYCLFHRKSLHVSRSLQWKLRDELKLTQPDLVERISRLLVLRRFDALAKLS

XP_038904681.1 putative pentatricopeptide repeat-containing protein At1g19290 [Benincasa hispida]1.2e-1474.6Show/hide
Query:  MPRYFPTSVAHQFYCLFHRKSLHVSRSLQWKLRDELKLTQPDLVERISRLLVLRRFDALAKLS
        M RY PTS+   +  L  RKSLHVSR+LQWK RDELKL +PDLV+RISRLLVLRRFDALAKLS
Subjt:  MPRYFPTSVAHQFYCLFHRKSLHVSRSLQWKLRDELKLTQPDLVERISRLLVLRRFDALAKLS

TrEMBL top hitse value%identityAlignment
A0A1S3CRW3 LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g192908.1e-1270Show/hide
Query:  YFPTSVAHQFYCLFHRKSLHVSRSLQWKLRDELKLTQPDLVERISRLLVLRRFDALAKLS
        Y  TS+   +  L  R SLHVSR+LQWK  DELKL+QPDLV+RISRLLVLRRFDALA LS
Subjt:  YFPTSVAHQFYCLFHRKSLHVSRSLQWKLRDELKLTQPDLVERISRLLVLRRFDALAKLS

A0A5A7U704 Putative pentatricopeptide repeat-containing protein8.1e-1270Show/hide
Query:  YFPTSVAHQFYCLFHRKSLHVSRSLQWKLRDELKLTQPDLVERISRLLVLRRFDALAKLS
        Y  TS+   +  L  R SLHVSR+LQWK  DELKL+QPDLV+RISRLLVLRRFDALA LS
Subjt:  YFPTSVAHQFYCLFHRKSLHVSRSLQWKLRDELKLTQPDLVERISRLLVLRRFDALAKLS

A0A6J1CFX4 putative pentatricopeptide repeat-containing protein At1g192903.8e-2595.24Show/hide
Query:  MPRYFPTSVAHQFYCLFHRKSLHVSRSLQWKLRDELKLTQPDLVERISRLLVLRRFDALAKLS
        MPRYFPTSVAHQFYCL HRKSLHVSRSLQWKLRDELKLTQPDLVERISR+LVLRRFDAL KLS
Subjt:  MPRYFPTSVAHQFYCLFHRKSLHVSRSLQWKLRDELKLTQPDLVERISRLLVLRRFDALAKLS

A0A6J1FLS8 putative pentatricopeptide repeat-containing protein At1g192903.9e-1471.43Show/hide
Query:  MPRYFPTSVAHQFYCLFHRKSLHVSRSLQWKLRDELKLTQPDLVERISRLLVLRRFDALAKLS
        M R+FPTS+   + CL  RKS+HVS  LQWK RDELKL Q DLV+RISRLLVLRR DALAKLS
Subjt:  MPRYFPTSVAHQFYCLFHRKSLHVSRSLQWKLRDELKLTQPDLVERISRLLVLRRFDALAKLS

A0A6J1J3C3 putative pentatricopeptide repeat-containing protein At1g192901.7e-1471.43Show/hide
Query:  MPRYFPTSVAHQFYCLFHRKSLHVSRSLQWKLRDELKLTQPDLVERISRLLVLRRFDALAKLS
        M R+FPTS+   + CL  RKS+HVS +LQWK RDELKL Q DLV+RISRLLVLRR DALAKLS
Subjt:  MPRYFPTSVAHQFYCLFHRKSLHVSRSLQWKLRDELKLTQPDLVERISRLLVLRRFDALAKLS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCAGGTACTTTCCGACATCCGTTGCTCACCAATTTTACTGTCTATTTCATCGGAAGTCGCTTCACGTATCTCGGAGTCTCCAATGGAAGCTCCGAGACGAATTGAA
GCTGACGCAACCGGATTTGGTTGAACGAATCTCCCGCCTCCTAGTCCTTCGACGATTCGATGCGCTCGCGAAGCTGTCC
mRNA sequenceShow/hide mRNA sequence
ATGCCCAGGTACTTTCCGACATCCGTTGCTCACCAATTTTACTGTCTATTTCATCGGAAGTCGCTTCACGTATCTCGGAGTCTCCAATGGAAGCTCCGAGACGAATTGAA
GCTGACGCAACCGGATTTGGTTGAACGAATCTCCCGCCTCCTAGTCCTTCGACGATTCGATGCGCTCGCGAAGCTGTCC
Protein sequenceShow/hide protein sequence
MPRYFPTSVAHQFYCLFHRKSLHVSRSLQWKLRDELKLTQPDLVERISRLLVLRRFDALAKLS