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MS008869 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS008869
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase
Genome locationscaffold629:148990..149157
RNA-Seq ExpressionMS008869
SyntenyMS008869
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0043167 - ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047078.1 reverse transcriptase [Cucumis melo var. makuwa]1.3e-0760Show/hide
Query:  KEFHWLGARTNLGENEHYQVARCIGGLCNGIKERIQVQLIGYLNEAIATAVTIEE
        KEFH LGAR NL ENE +Q+AR IGGL   IKE+I++Q   +L+EAI+ A T+EE
Subjt:  KEFHWLGARTNLGENEHYQVARCIGGLCNGIKERIQVQLIGYLNEAIATAVTIEE
KAA0051973.1 E3 ubiquitin-protein ligase SHPRH isoform X4 [Cucumis melo var. makuwa]3.8e-0754.55Show/hide
Query:  KEFHWLGARTNLGENEHYQVARCIGGLCNGIKERIQVQLIGYLNEAIATAVTIEE
        +EFH L  RTNL ENEH+Q+AR IGGL   IKE++++Q   +L+EAI+ A T++E
Subjt:  KEFHWLGARTNLGENEHYQVARCIGGLCNGIKERIQVQLIGYLNEAIATAVTIEE
XP_022155185.1 uncharacterized protein LOC111022320 [Momordica charantia]4.8e-1892.31Show/hide
Query:  WLGARTNLGENEHYQVARCIGGLCNGIKERIQVQLIGYLNEAIATAVTIEEQ
        W  ARTNLGENEHYQVARCIGGLCN I+ERIQVQLIGYLNEAIATAVTIEEQ
Subjt:  WLGARTNLGENEHYQVARCIGGLCNGIKERIQVQLIGYLNEAIATAVTIEEQ
XP_031743026.1 uncharacterized protein LOC116404533 [Cucumis sativus]6.5e-0756.36Show/hide
Query:  KEFHWLGARTNLGENEHYQVARCIGGLCNGIKERIQVQLIGYLNEAIATAVTIEE
        +EFH L ARTNL ENE +QVAR +GGL   IKE++++Q   +L+EAI+ A T+EE
Subjt:  KEFHWLGARTNLGENEHYQVARCIGGLCNGIKERIQVQLIGYLNEAIATAVTIEE
XP_031745523.1 uncharacterized protein LOC116405899 [Cucumis sativus]3.8e-0754.55Show/hide
Query:  KEFHWLGARTNLGENEHYQVARCIGGLCNGIKERIQVQLIGYLNEAIATAVTIEE
        +EFH L ARTNL ENE +Q+AR +GGL   IKE++++Q + +L+EAI+ A T+EE
Subjt:  KEFHWLGARTNLGENEHYQVARCIGGLCNGIKERIQVQLIGYLNEAIATAVTIEE
TrEMBL top hitse value%identityAlignment
A0A5A7T256 Reverse transcriptase1.0e-0552.73Show/hide
Query:  KEFHWLGARTNLGENEHYQVARCIGGLCNGIKERIQVQLIGYLNEAIATAVTIEE
        +EFH L AR NL ENE +Q+AR IGGL   IKE++++     L+EAI+ A T+EE
Subjt:  KEFHWLGARTNLGENEHYQVARCIGGLCNGIKERIQVQLIGYLNEAIATAVTIEE
A0A5A7U7S6 E3 ubiquitin-protein ligase SHPRH isoform X41.8e-0754.55Show/hide
Query:  KEFHWLGARTNLGENEHYQVARCIGGLCNGIKERIQVQLIGYLNEAIATAVTIEE
        +EFH L  RTNL ENEH+Q+AR IGGL   IKE++++Q   +L+EAI+ A T++E
Subjt:  KEFHWLGARTNLGENEHYQVARCIGGLCNGIKERIQVQLIGYLNEAIATAVTIEE
A0A5D3C3X9 Reverse transcriptase6.3e-0860Show/hide
Query:  KEFHWLGARTNLGENEHYQVARCIGGLCNGIKERIQVQLIGYLNEAIATAVTIEE
        KEFH LGAR NL ENE +Q+AR IGGL   IKE+I++Q   +L+EAI+ A T+EE
Subjt:  KEFHWLGARTNLGENEHYQVARCIGGLCNGIKERIQVQLIGYLNEAIATAVTIEE
A0A5D3E417 Transposon Ty3-I Gag-Pol polyprotein isoform X12.0e-0654.55Show/hide
Query:  KEFHWLGARTNLGENEHYQVARCIGGLCNGIKERIQVQLIGYLNEAIATAVTIEE
        +EFH LGAR NL ENE +Q+AR IGGL   IKE++++     L+EAI+ A T+EE
Subjt:  KEFHWLGARTNLGENEHYQVARCIGGLCNGIKERIQVQLIGYLNEAIATAVTIEE
A0A6J1DLQ6 uncharacterized protein LOC1110223202.3e-1892.31Show/hide
Query:  WLGARTNLGENEHYQVARCIGGLCNGIKERIQVQLIGYLNEAIATAVTIEEQ
        W  ARTNLGENEHYQVARCIGGLCN I+ERIQVQLIGYLNEAIATAVTIEEQ
Subjt:  WLGARTNLGENEHYQVARCIGGLCNGIKERIQVQLIGYLNEAIATAVTIEEQ
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAGGAGTTCCATTGGTTAGGTGCTCGAACAAACCTCGGAGAGAATGAACACTATCAAGTGGCTCGATGCATTGGGGGCCTTTGTAATGGCATCAAGGAAAGGATTCAGGT
CCAGCTTATAGGGTATCTCAATGAGGCTATTGCCACTGCTGTCACCATTGAGGAACAA
mRNA sequenceShow/hide mRNA sequence
AAGGAGTTCCATTGGTTAGGTGCTCGAACAAACCTCGGAGAGAATGAACACTATCAAGTGGCTCGATGCATTGGGGGCCTTTGTAATGGCATCAAGGAAAGGATTCAGGT
CCAGCTTATAGGGTATCTCAATGAGGCTATTGCCACTGCTGTCACCATTGAGGAACAA
Protein sequenceShow/hide protein sequence
KEFHWLGARTNLGENEHYQVARCIGGLCNGIKERIQVQLIGYLNEAIATAVTIEEQ