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MS008870 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS008870
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase
Genome locationscaffold629:149332..149492
RNA-Seq ExpressionMS008870
SyntenyMS008870
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032067.1 reverse transcriptase [Cucumis melo var. makuwa]2.9e-0958.49Show/hide
Query:  KMKIDLPTFDEKLEIE-FLEWVKNVESFFGYMSTSDHKKVKLVALNLKGRASA
        +MK+DLPTF+ ++++E FL+W+KN+E+ F Y +TS+HKKV+LVAL L+G ASA
Subjt:  KMKIDLPTFDEKLEIE-FLEWVKNVESFFGYMSTSDHKKVKLVALNLKGRASA

KAA0035680.1 reverse transcriptase [Cucumis melo var. makuwa]7.7e-1068.52Show/hide
Query:  YKMKIDLPTFDEKLEIE-FLEWVKNVESFFGYMSTSDHKKVKLVALNLKGRASA
        YKMKIDLPT++ K +IE FL+W+KN E+FF YM T D KKV LVAL LKG ASA
Subjt:  YKMKIDLPTFDEKLEIE-FLEWVKNVESFFGYMSTSDHKKVKLVALNLKGRASA

KAA0054966.1 transposon Ty3-I Gag-Pol polyprotein isoform X1 [Cucumis melo var. makuwa]1.7e-0966.67Show/hide
Query:  YKMKIDLPTFDEKLEIE-FLEWVKNVESFFGYMSTSDHKKVKLVALNLKGRASA
        YKMKIDLP++D K  IE FL+W+KN E+FF YM T+ +KKV LVAL LKG ASA
Subjt:  YKMKIDLPTFDEKLEIE-FLEWVKNVESFFGYMSTSDHKKVKLVALNLKGRASA

KAA0058889.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]2.3e-0960.38Show/hide
Query:  KMKIDLPTFDEKLEIE-FLEWVKNVESFFGYMSTSDHKKVKLVALNLKGRASA
        +MK+DLPTF+ ++++E FL+W+KNVE+FF Y + S+HKKV+LVAL L+G ASA
Subjt:  KMKIDLPTFDEKLEIE-FLEWVKNVESFFGYMSTSDHKKVKLVALNLKGRASA

KAA0061454.1 reverse transcriptase [Cucumis melo var. makuwa]2.3e-0964.81Show/hide
Query:  YKMKIDLPTFDEKLEIE-FLEWVKNVESFFGYMSTSDHKKVKLVALNLKGRASA
        YKMKIDLPT++ K +IE FL+W+KN+E+FF YM T D KK+ LVAL L G ASA
Subjt:  YKMKIDLPTFDEKLEIE-FLEWVKNVESFFGYMSTSDHKKVKLVALNLKGRASA

TrEMBL top hitse value%identityAlignment
A0A5A7SXB6 Reverse transcriptase3.7e-1068.52Show/hide
Query:  YKMKIDLPTFDEKLEIE-FLEWVKNVESFFGYMSTSDHKKVKLVALNLKGRASA
        YKMKIDLPT++ K +IE FL+W+KN E+FF YM T D KKV LVAL LKG ASA
Subjt:  YKMKIDLPTFDEKLEIE-FLEWVKNVESFFGYMSTSDHKKVKLVALNLKGRASA

A0A5D3CH16 Reverse transcriptase1.1e-0964.81Show/hide
Query:  YKMKIDLPTFDEKLEIE-FLEWVKNVESFFGYMSTSDHKKVKLVALNLKGRASA
        YKMKIDLPT++ K +IE FL+W+KN+E+FF YM T D KK+ LVAL L G ASA
Subjt:  YKMKIDLPTFDEKLEIE-FLEWVKNVESFFGYMSTSDHKKVKLVALNLKGRASA

A0A5D3CPS9 Reverse transcriptase1.4e-0958.49Show/hide
Query:  KMKIDLPTFDEKLEIE-FLEWVKNVESFFGYMSTSDHKKVKLVALNLKGRASA
        +MK+DLPTF+ ++++E FL+W+KN+E+ F Y +TS+HKKV+LVAL L+G ASA
Subjt:  KMKIDLPTFDEKLEIE-FLEWVKNVESFFGYMSTSDHKKVKLVALNLKGRASA

A0A5D3DGR0 Reverse transcriptase8.3e-1066.67Show/hide
Query:  YKMKIDLPTFDEKLEIE-FLEWVKNVESFFGYMSTSDHKKVKLVALNLKGRASA
        YKMKIDLP++D K  IE FL+W+KN E+FF YM T+ +KKV LVAL LKG ASA
Subjt:  YKMKIDLPTFDEKLEIE-FLEWVKNVESFFGYMSTSDHKKVKLVALNLKGRASA

A0A5D3DJC1 Transposon Ty3-G Gag-Pol polyprotein1.1e-0960.38Show/hide
Query:  KMKIDLPTFDEKLEIE-FLEWVKNVESFFGYMSTSDHKKVKLVALNLKGRASA
        +MK+DLPTF+ ++++E FL+W+KNVE+FF Y + S+HKKV+LVAL L+G ASA
Subjt:  KMKIDLPTFDEKLEIE-FLEWVKNVESFFGYMSTSDHKKVKLVALNLKGRASA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TATAAAATGAAAATTGACCTTCCTACTTTTGATGAAAAATTAGAAATAGAATTTCTCGAATGGGTAAAAAATGTGGAGAGCTTCTTCGGCTATATGTCGACCTCGGACCA
CAAGAAGGTAAAATTAGTCGCTCTCAATCTCAAAGGTAGAGCATCCGCA
mRNA sequenceShow/hide mRNA sequence
TATAAAATGAAAATTGACCTTCCTACTTTTGATGAAAAATTAGAAATAGAATTTCTCGAATGGGTAAAAAATGTGGAGAGCTTCTTCGGCTATATGTCGACCTCGGACCA
CAAGAAGGTAAAATTAGTCGCTCTCAATCTCAAAGGTAGAGCATCCGCA
Protein sequenceShow/hide protein sequence
YKMKIDLPTFDEKLEIEFLEWVKNVESFFGYMSTSDHKKVKLVALNLKGRASA