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MS008884 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS008884
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description3'-5' exonuclease domain-containing protein
Genome locationscaffold629:333682..333936
RNA-Seq ExpressionMS008884
SyntenyMS008884
Gene Ontology termsGO:0006139 - nucleobase-containing compound metabolic process (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008408 - 3'-5' exonuclease activity (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008443244.1 PREDICTED: Werner Syndrome-like exonuclease [Cucumis melo]9.7e-1553.49Show/hide
Query:  LCSDHQCLIFQLIHASKIP-CLFDYFDDESFPFIGVGIRETSTS-SADYGLKVRKAVDLRILAENLMEKGDLTNAGLKVLGKEIIG
        LC   +CLI QL+H  +IP  LF++ ++ESF F+GVGI E +   + DYGLKV K +DLR LAE++  +G+L NAGLK LGKE++G
Subjt:  LCSDHQCLIFQLIHASKIP-CLFDYFDDESFPFIGVGIRETSTS-SADYGLKVRKAVDLRILAENLMEKGDLTNAGLKVLGKEIIG

XP_011652174.1 Werner Syndrome-like exonuclease [Cucumis sativus]9.7e-1553.49Show/hide
Query:  LCSDHQCLIFQLIHASKIP-CLFDYFDDESFPFIGVGIRETSTS-SADYGLKVRKAVDLRILAENLMEKGDLTNAGLKVLGKEIIG
        LC   +CLI QL+H  +IP  LF++ ++ESF F+GVGI E +   + DYGLKV K +DLR LAE++  +G+L NAGLK LGKE++G
Subjt:  LCSDHQCLIFQLIHASKIP-CLFDYFDDESFPFIGVGIRETSTS-SADYGLKVRKAVDLRILAENLMEKGDLTNAGLKVLGKEIIG

XP_022147750.1 Werner Syndrome-like exonuclease [Momordica charantia]4.6e-1761.63Show/hide
Query:  LCSDHQCLIFQLIHASKIP-CLFDYFDDESFPFIGVGIRE-TSTSSADYGLKVRKAVDLRILAENLMEKGDLTNAGLKVLGKEIIG
        LC D +CLIFQLIHAS+IP  L D+  DESF F+GVGI E       DYGL V   VDLR LAEN M +GDL NAGLK L KE++G
Subjt:  LCSDHQCLIFQLIHASKIP-CLFDYFDDESFPFIGVGIRE-TSTSSADYGLKVRKAVDLRILAENLMEKGDLTNAGLKVLGKEIIG

XP_038903327.1 Werner Syndrome-like exonuclease isoform X2 [Benincasa hispida]2.2e-1454.65Show/hide
Query:  LCSDHQCLIFQLIHASKIP-CLFDYFDDESFPFIGVGIRETSTS-SADYGLKVRKAVDLRILAENLMEKGDLTNAGLKVLGKEIIG
        LC   +CLI QLIH  +IP  LF++ ++ES  F+GVGI E +   + DYGLKV K VDLR LAE++  + DL NAGLK LGKE++G
Subjt:  LCSDHQCLIFQLIHASKIP-CLFDYFDDESFPFIGVGIRETSTS-SADYGLKVRKAVDLRILAENLMEKGDLTNAGLKVLGKEIIG

XP_038906336.1 Werner Syndrome-like exonuclease [Benincasa hispida]2.6e-1554.65Show/hide
Query:  LCSDHQCLIFQLIHASKIP-CLFDYFDDESFPFIGVGI-RETSTSSADYGLKVRKAVDLRILAENLMEKGDLTNAGLKVLGKEIIG
        LC   +CLIFQLIH S+IP  L D+ +D++F F+GVGI ++      DY LKV   VDLR LA N ME+ DL NAGLK+LG+E++G
Subjt:  LCSDHQCLIFQLIHASKIP-CLFDYFDDESFPFIGVGI-RETSTSSADYGLKVRKAVDLRILAENLMEKGDLTNAGLKVLGKEIIG

TrEMBL top hitse value%identityAlignment
A0A0A0LBN3 3'-5' exonuclease domain-containing protein4.7e-1553.49Show/hide
Query:  LCSDHQCLIFQLIHASKIP-CLFDYFDDESFPFIGVGIRETSTS-SADYGLKVRKAVDLRILAENLMEKGDLTNAGLKVLGKEIIG
        LC   +CLI QL+H  +IP  LF++ ++ESF F+GVGI E +   + DYGLKV K +DLR LAE++  +G+L NAGLK LGKE++G
Subjt:  LCSDHQCLIFQLIHASKIP-CLFDYFDDESFPFIGVGIRETSTS-SADYGLKVRKAVDLRILAENLMEKGDLTNAGLKVLGKEIIG

A0A1S3B738 Werner Syndrome-like exonuclease4.7e-1553.49Show/hide
Query:  LCSDHQCLIFQLIHASKIP-CLFDYFDDESFPFIGVGIRETSTS-SADYGLKVRKAVDLRILAENLMEKGDLTNAGLKVLGKEIIG
        LC   +CLI QL+H  +IP  LF++ ++ESF F+GVGI E +   + DYGLKV K +DLR LAE++  +G+L NAGLK LGKE++G
Subjt:  LCSDHQCLIFQLIHASKIP-CLFDYFDDESFPFIGVGIRETSTS-SADYGLKVRKAVDLRILAENLMEKGDLTNAGLKVLGKEIIG

A0A5A7UI20 Werner Syndrome-like exonuclease4.7e-1553.49Show/hide
Query:  LCSDHQCLIFQLIHASKIP-CLFDYFDDESFPFIGVGIRETSTS-SADYGLKVRKAVDLRILAENLMEKGDLTNAGLKVLGKEIIG
        LC   +CLI QL+H  +IP  LF++ ++ESF F+GVGI E +   + DYGLKV K +DLR LAE++  +G+L NAGLK LGKE++G
Subjt:  LCSDHQCLIFQLIHASKIP-CLFDYFDDESFPFIGVGIRETSTS-SADYGLKVRKAVDLRILAENLMEKGDLTNAGLKVLGKEIIG

A0A6J1D107 Werner Syndrome-like exonuclease2.3e-1761.63Show/hide
Query:  LCSDHQCLIFQLIHASKIP-CLFDYFDDESFPFIGVGIRE-TSTSSADYGLKVRKAVDLRILAENLMEKGDLTNAGLKVLGKEIIG
        LC D +CLIFQLIHAS+IP  L D+  DESF F+GVGI E       DYGL V   VDLR LAEN M +GDL NAGLK L KE++G
Subjt:  LCSDHQCLIFQLIHASKIP-CLFDYFDDESFPFIGVGIRE-TSTSSADYGLKVRKAVDLRILAENLMEKGDLTNAGLKVLGKEIIG

E5GBP0 3'-5' exonuclease4.7e-1553.49Show/hide
Query:  LCSDHQCLIFQLIHASKIP-CLFDYFDDESFPFIGVGIRETSTS-SADYGLKVRKAVDLRILAENLMEKGDLTNAGLKVLGKEIIG
        LC   +CLI QL+H  +IP  LF++ ++ESF F+GVGI E +   + DYGLKV K +DLR LAE++  +G+L NAGLK LGKE++G
Subjt:  LCSDHQCLIFQLIHASKIP-CLFDYFDDESFPFIGVGIRETSTS-SADYGLKVRKAVDLRILAENLMEKGDLTNAGLKVLGKEIIG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTCTGCTCTGATCACCAATGCCTCATTTTTCAACTCATTCACGCCTCCAAAATCCCCTGTCTGTTCGATTACTTTGACGACGAGTCCTTCCCCTTCATAGGAGTTGGAAT
CCGCGAGACGTCAACAAGCTCGGCTGATTACGGCTTGAAAGTGAGAAAGGCGGTGGATCTAAGGATTTTGGCTGAGAATTTAATGGAAAAAGGAGATCTGACAAATGCAG
GATTGAAGGTATTGGGGAAAGAGATTATTGGA
mRNA sequenceShow/hide mRNA sequence
CTCTGCTCTGATCACCAATGCCTCATTTTTCAACTCATTCACGCCTCCAAAATCCCCTGTCTGTTCGATTACTTTGACGACGAGTCCTTCCCCTTCATAGGAGTTGGAAT
CCGCGAGACGTCAACAAGCTCGGCTGATTACGGCTTGAAAGTGAGAAAGGCGGTGGATCTAAGGATTTTGGCTGAGAATTTAATGGAAAAAGGAGATCTGACAAATGCAG
GATTGAAGGTATTGGGGAAAGAGATTATTGGA
Protein sequenceShow/hide protein sequence
LCSDHQCLIFQLIHASKIPCLFDYFDDESFPFIGVGIRETSTSSADYGLKVRKAVDLRILAENLMEKGDLTNAGLKVLGKEIIG