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MS008903 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS008903
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold490:151766..151933
RNA-Seq ExpressionMS008903
SyntenyMS008903
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]9.0e-0942.86Show/hide
Query:  RFFLWTLCYRSLNTSDKVQRKFPNWSFSPSICRMCYGSKEFLDHLLLLCPFPRNWW
        +FF+WTL +  +NT+D++Q++ PNW+ SP+ C MC  S+E ++HL + CP+ +  W
Subjt:  RFFLWTLCYRSLNTSDKVQRKFPNWSFSPSICRMCYGSKEFLDHLLLLCPFPRNWW

KAA0044451.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]9.0e-0942.86Show/hide
Query:  RFFLWTLCYRSLNTSDKVQRKFPNWSFSPSICRMCYGSKEFLDHLLLLCPFPRNWW
        +FF+WTL +  +NT+D++Q++ PNW+ SP+ C MC  S+E ++HL + CP+ +  W
Subjt:  RFFLWTLCYRSLNTSDKVQRKFPNWSFSPSICRMCYGSKEFLDHLLLLCPFPRNWW

KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]9.0e-0942.86Show/hide
Query:  RFFLWTLCYRSLNTSDKVQRKFPNWSFSPSICRMCYGSKEFLDHLLLLCPFPRNWW
        +FF+WTL +  +NT+D++Q++ PNW+ SP+ C MC  S+E ++HL + CP+ +  W
Subjt:  RFFLWTLCYRSLNTSDKVQRKFPNWSFSPSICRMCYGSKEFLDHLLLLCPFPRNWW

TYK29578.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]9.0e-0942.86Show/hide
Query:  RFFLWTLCYRSLNTSDKVQRKFPNWSFSPSICRMCYGSKEFLDHLLLLCPFPRNWW
        +FF+WTL +  +NT+D++Q++ PNW+ SP+ C MC  S+E ++HL + CP+ +  W
Subjt:  RFFLWTLCYRSLNTSDKVQRKFPNWSFSPSICRMCYGSKEFLDHLLLLCPFPRNWW

TYK31299.1 protein FAM91A1 [Cucumis melo var. makuwa]6.3e-1057.14Show/hide
Query:  RFFLWTLCYRSLNTSDKVQRKFPNWSFSPSICRMCYGSKEFLDHLLLLCPFPRNWW
        +FFLW+L YRSLN  +K+QRKFPN S SPSIC +C    E  DHL L C F    W
Subjt:  RFFLWTLCYRSLNTSDKVQRKFPNWSFSPSICRMCYGSKEFLDHLLLLCPFPRNWW

TrEMBL top hitse value%identityAlignment
A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein4.4e-0942.86Show/hide
Query:  RFFLWTLCYRSLNTSDKVQRKFPNWSFSPSICRMCYGSKEFLDHLLLLCPFPRNWW
        +FF+WTL +  +NT+D++Q++ PNW+ SP+ C MC  S+E ++HL + CP+ +  W
Subjt:  RFFLWTLCYRSLNTSDKVQRKFPNWSFSPSICRMCYGSKEFLDHLLLLCPFPRNWW

A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein4.4e-0942.86Show/hide
Query:  RFFLWTLCYRSLNTSDKVQRKFPNWSFSPSICRMCYGSKEFLDHLLLLCPFPRNWW
        +FF+WTL +  +NT+D++Q++ PNW+ SP+ C MC  S+E ++HL + CP+ +  W
Subjt:  RFFLWTLCYRSLNTSDKVQRKFPNWSFSPSICRMCYGSKEFLDHLLLLCPFPRNWW

A0A5A7TSA7 LINE-1 retrotransposable element ORF2 protein4.4e-0942.86Show/hide
Query:  RFFLWTLCYRSLNTSDKVQRKFPNWSFSPSICRMCYGSKEFLDHLLLLCPFPRNWW
        +FF+WTL +  +NT+D++Q++ PNW+ SP+ C MC  S+E ++HL + CP+ +  W
Subjt:  RFFLWTLCYRSLNTSDKVQRKFPNWSFSPSICRMCYGSKEFLDHLLLLCPFPRNWW

A0A5A7UTI6 LINE-1 retrotransposable element ORF2 protein4.4e-0946.43Show/hide
Query:  RFFLWTLCYRSLNTSDKVQRKFPNWSFSPSICRMCYGSKEFLDHLLLLCPFPRNWW
        +FF+WT+ ++ LNT DK+Q++ P+ S +PS C  C  S E ++HL + CPF RN W
Subjt:  RFFLWTLCYRSLNTSDKVQRKFPNWSFSPSICRMCYGSKEFLDHLLLLCPFPRNWW

A0A5D3E632 Protein FAM91A13.0e-1057.14Show/hide
Query:  RFFLWTLCYRSLNTSDKVQRKFPNWSFSPSICRMCYGSKEFLDHLLLLCPFPRNWW
        +FFLW+L YRSLN  +K+QRKFPN S SPSIC +C    E  DHL L C F    W
Subjt:  RFFLWTLCYRSLNTSDKVQRKFPNWSFSPSICRMCYGSKEFLDHLLLLCPFPRNWW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGGTTCTTTCTTTGGACCCTTTGCTATAGGAGTCTAAATACCTCGGACAAAGTTCAAAGAAAGTTTCCAAATTGGTCCTTTTCCCCCTCCATTTGCAGGATGTGCTATGG
GTCAAAGGAGTTTCTAGACCACCTTCTCCTTCTCTGCCCATTTCCGAGGAACTGGTGG
mRNA sequenceShow/hide mRNA sequence
AGGTTCTTTCTTTGGACCCTTTGCTATAGGAGTCTAAATACCTCGGACAAAGTTCAAAGAAAGTTTCCAAATTGGTCCTTTTCCCCCTCCATTTGCAGGATGTGCTATGG
GTCAAAGGAGTTTCTAGACCACCTTCTCCTTCTCTGCCCATTTCCGAGGAACTGGTGG
Protein sequenceShow/hide protein sequence
RFFLWTLCYRSLNTSDKVQRKFPNWSFSPSICRMCYGSKEFLDHLLLLCPFPRNWW