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MS008950 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS008950
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPhycobilisome rod-core linker polypeptide CpcG2 like
Genome locationscaffold399:79342..79626
RNA-Seq ExpressionMS008950
SyntenyMS008950
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022145531.1 uncharacterized protein LOC111014959 [Momordica charantia]6.7e-1076.36Show/hide
Query:  SLLSNYFILSISFSSRTFQRFAVRTSKQIEDISTKAAQKKQELAEQVKDLSKNFE
        S L N  ++    +SR+FQRFAVRTSKQIEDIS KAAQKKQELAEQVKDLSKNFE
Subjt:  SLLSNYFILSISFSSRTFQRFAVRTSKQIEDISTKAAQKKQELAEQVKDLSKNFE
XP_022935686.1 uncharacterized protein LOC111442470 [Cucurbita moschata]2.0e-0974.55Show/hide
Query:  SLLSNYFILSISFSSRTFQRFAVRTSKQIEDISTKAAQKKQELAEQVKDLSKNFE
        S L N  +++   +SR FQRFAVRTSKQIEDIS KAAQKKQELAEQVKDLSKNF+
Subjt:  SLLSNYFILSISFSSRTFQRFAVRTSKQIEDISTKAAQKKQELAEQVKDLSKNFE
XP_022949523.1 uncharacterized protein LOC111452848 [Cucurbita moschata]3.9e-1076.36Show/hide
Query:  SLLSNYFILSISFSSRTFQRFAVRTSKQIEDISTKAAQKKQELAEQVKDLSKNFE
        S L N  +++   +SR+FQRFAVRTSKQIEDISTKAAQKKQELAEQ+KDLSKNFE
Subjt:  SLLSNYFILSISFSSRTFQRFAVRTSKQIEDISTKAAQKKQELAEQVKDLSKNFE
XP_023527736.1 uncharacterized protein LOC111790863 [Cucurbita pepo subsp. pepo]6.7e-1076.36Show/hide
Query:  SLLSNYFILSISFSSRTFQRFAVRTSKQIEDISTKAAQKKQELAEQVKDLSKNFE
        S L N  I++   +SRTFQRFAVRTSKQIEDIS KA+QKKQELAEQVKDLSKNF+
Subjt:  SLLSNYFILSISFSSRTFQRFAVRTSKQIEDISTKAAQKKQELAEQVKDLSKNFE
XP_038903248.1 uncharacterized protein LOC120089892 [Benincasa hispida]1.5e-0974.55Show/hide
Query:  SLLSNYFILSISFSSRTFQRFAVRTSKQIEDISTKAAQKKQELAEQVKDLSKNFE
        S L N  +++   +SRTFQRFAVRTSKQIE+IS KAAQKKQELAEQVKDLSKNF+
Subjt:  SLLSNYFILSISFSSRTFQRFAVRTSKQIEDISTKAAQKKQELAEQVKDLSKNFE
TrEMBL top hitse value%identityAlignment
A0A1S3B691 uncharacterized protein LOC1034862741.2e-0972.73Show/hide
Query:  SLLSNYFILSISFSSRTFQRFAVRTSKQIEDISTKAAQKKQELAEQVKDLSKNFE
        S L N  +++   +SR+FQRFAV+TSKQIEDISTKAAQKKQELAEQVKD SKNF+
Subjt:  SLLSNYFILSISFSSRTFQRFAVRTSKQIEDISTKAAQKKQELAEQVKDLSKNFE
A0A6J1CWK8 uncharacterized protein LOC1110149593.2e-1076.36Show/hide
Query:  SLLSNYFILSISFSSRTFQRFAVRTSKQIEDISTKAAQKKQELAEQVKDLSKNFE
        S L N  ++    +SR+FQRFAVRTSKQIEDIS KAAQKKQELAEQVKDLSKNFE
Subjt:  SLLSNYFILSISFSSRTFQRFAVRTSKQIEDISTKAAQKKQELAEQVKDLSKNFE
A0A6J1F5E7 uncharacterized protein LOC1114424709.4e-1074.55Show/hide
Query:  SLLSNYFILSISFSSRTFQRFAVRTSKQIEDISTKAAQKKQELAEQVKDLSKNFE
        S L N  +++   +SR FQRFAVRTSKQIEDIS KAAQKKQELAEQVKDLSKNF+
Subjt:  SLLSNYFILSISFSSRTFQRFAVRTSKQIEDISTKAAQKKQELAEQVKDLSKNFE
A0A6J1GCB5 uncharacterized protein LOC1114528481.9e-1076.36Show/hide
Query:  SLLSNYFILSISFSSRTFQRFAVRTSKQIEDISTKAAQKKQELAEQVKDLSKNFE
        S L N  +++   +SR+FQRFAVRTSKQIEDISTKAAQKKQELAEQ+KDLSKNFE
Subjt:  SLLSNYFILSISFSSRTFQRFAVRTSKQIEDISTKAAQKKQELAEQVKDLSKNFE
A0A6J1I5H8 uncharacterized protein LOC1114701021.9e-1076.36Show/hide
Query:  SLLSNYFILSISFSSRTFQRFAVRTSKQIEDISTKAAQKKQELAEQVKDLSKNFE
        S L N  +++   +SR+FQRFAVRTSKQIEDISTKAAQKKQELAEQ+KDLSKNFE
Subjt:  SLLSNYFILSISFSSRTFQRFAVRTSKQIEDISTKAAQKKQELAEQVKDLSKNFE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G01350.1 unknown protein4.8e-0643.64Show/hide
Query:  SLLSNYFILSISFSSRTFQRFAVRTSKQIEDISTKAAQKKQELAEQVKDLSKNFE
        S ++N FI++   +S  FQRFAVRTSK+IE++S  AA+ ++++A+Q+++ +KN +
Subjt:  SLLSNYFILSISFSSRTFQRFAVRTSKQIEDISTKAAQKKQELAEQVKDLSKNFE

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCATTGTTGAGCAATTATTTCATTCTCTCAATTTCCTTTTCCAGCCGTACGTTTCAAAGGTTTGCTGTGAGGACGTCAAAACAAATCGAGGATATATCTACCAAGGCTGC
GCAGAAGAAGCAAGAACTTGCGGAACAGGTGAAAGATCTGTCCAAAAATTTCGAGGTTAGCGCTTTGCAC
mRNA sequenceShow/hide mRNA sequence
TCATTGTTGAGCAATTATTTCATTCTCTCAATTTCCTTTTCCAGCCGTACGTTTCAAAGGTTTGCTGTGAGGACGTCAAAACAAATCGAGGATATATCTACCAAGGCTGC
GCAGAAGAAGCAAGAACTTGCGGAACAGGTGAAAGATCTGTCCAAAAATTTCGAGGTTAGCGCTTTGCAC
Protein sequenceShow/hide protein sequence
SLLSNYFILSISFSSRTFQRFAVRTSKQIEDISTKAAQKKQELAEQVKDLSKNFEVSALH