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MS008960 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS008960
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDEAD-box ATP-dependent RNA helicase 31-like
Genome locationscaffold399:147685..147936
RNA-Seq ExpressionMS008960
SyntenyMS008960
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0003724 - RNA helicase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsIPR027417 - P-loop containing nucleoside triphosphate hydrolase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3439877.1 hypothetical protein FNV43_RR18155 [Rhamnella rubrinervis]2.5e-1987.27Show/hide
Query:  RKDIERIIATVPKQRQTLLFSATIPEEVRQICHIALRRDHEFVNTIQEGSEESHA
        RKDIE+IIA VPKQRQTLLFSAT+PEEVRQICHIAL+RDHEF+NT+QEGSEE+HA
Subjt:  RKDIERIIATVPKQRQTLLFSATIPEEVRQICHIALRRDHEFVNTIQEGSEESHA

OMO64293.1 hypothetical protein CCACVL1_21871 [Corchorus capsularis]2.5e-1987.27Show/hide
Query:  RKDIERIIATVPKQRQTLLFSATIPEEVRQICHIALRRDHEFVNTIQEGSEESHA
        RKDIERIIA VPKQRQTLLFSAT+PEEVRQICHIALRRDHEF+NT+QEG+EE+H+
Subjt:  RKDIERIIATVPKQRQTLLFSATIPEEVRQICHIALRRDHEFVNTIQEGSEESHA

XP_021281041.1 DEAD-box ATP-dependent RNA helicase 31-like [Herrania umbratica]1.1e-1989.09Show/hide
Query:  RKDIERIIATVPKQRQTLLFSATIPEEVRQICHIALRRDHEFVNTIQEGSEESHA
        RKDIERIIA VPKQRQTLLFSAT+PEEVRQICHIALRRDHEF+NT+QEGSEE+H+
Subjt:  RKDIERIIATVPKQRQTLLFSATIPEEVRQICHIALRRDHEFVNTIQEGSEESHA

XP_022158751.1 DEAD-box ATP-dependent RNA helicase 31-like [Momordica charantia]6.7e-2092.73Show/hide
Query:  RKDIERIIATVPKQRQTLLFSATIPEEVRQICHIALRRDHEFVNTIQEGSEESHA
        RKDIERIIA VPKQRQTLLFSAT+PEEVRQICHIALRRDHEFVNTI+EGSEE+HA
Subjt:  RKDIERIIATVPKQRQTLLFSATIPEEVRQICHIALRRDHEFVNTIQEGSEESHA

XP_024176141.1 DEAD-box ATP-dependent RNA helicase 31 [Rosa chinensis]1.1e-1989.09Show/hide
Query:  RKDIERIIATVPKQRQTLLFSATIPEEVRQICHIALRRDHEFVNTIQEGSEESHA
        RKDIERIIA VPKQRQTLLFSAT+PEEVRQICHIAL+RDHEF+NT+QEGSEE+HA
Subjt:  RKDIERIIATVPKQRQTLLFSATIPEEVRQICHIALRRDHEFVNTIQEGSEESHA

TrEMBL top hitse value%identityAlignment
A0A1R3H1R0 Uncharacterized protein1.2e-1987.27Show/hide
Query:  RKDIERIIATVPKQRQTLLFSATIPEEVRQICHIALRRDHEFVNTIQEGSEESHA
        RKDIERIIA VPKQRQTLLFSAT+PEEVRQICHIALRRDHEF+NT+QEG+EE+H+
Subjt:  RKDIERIIATVPKQRQTLLFSATIPEEVRQICHIALRRDHEFVNTIQEGSEESHA

A0A1R3KNE6 Uncharacterized protein1.2e-1987.27Show/hide
Query:  RKDIERIIATVPKQRQTLLFSATIPEEVRQICHIALRRDHEFVNTIQEGSEESHA
        RKDIERIIA VPKQRQTLLFSAT+PEEVRQICHIALRRDHEF+NT+QEG+EE+H+
Subjt:  RKDIERIIATVPKQRQTLLFSATIPEEVRQICHIALRRDHEFVNTIQEGSEESHA

A0A2P6SIB9 Putative RNA helicase5.5e-2089.09Show/hide
Query:  RKDIERIIATVPKQRQTLLFSATIPEEVRQICHIALRRDHEFVNTIQEGSEESHA
        RKDIERIIA VPKQRQTLLFSAT+PEEVRQICHIAL+RDHEF+NT+QEGSEE+HA
Subjt:  RKDIERIIATVPKQRQTLLFSATIPEEVRQICHIALRRDHEFVNTIQEGSEESHA

A0A6J1A2Q2 DEAD-box ATP-dependent RNA helicase 31-like5.5e-2089.09Show/hide
Query:  RKDIERIIATVPKQRQTLLFSATIPEEVRQICHIALRRDHEFVNTIQEGSEESHA
        RKDIERIIA VPKQRQTLLFSAT+PEEVRQICHIALRRDHEF+NT+QEGSEE+H+
Subjt:  RKDIERIIATVPKQRQTLLFSATIPEEVRQICHIALRRDHEFVNTIQEGSEESHA

A0A6J1E1W2 DEAD-box ATP-dependent RNA helicase 31-like3.2e-2092.73Show/hide
Query:  RKDIERIIATVPKQRQTLLFSATIPEEVRQICHIALRRDHEFVNTIQEGSEESHA
        RKDIERIIA VPKQRQTLLFSAT+PEEVRQICHIALRRDHEFVNTI+EGSEE+HA
Subjt:  RKDIERIIATVPKQRQTLLFSATIPEEVRQICHIALRRDHEFVNTIQEGSEESHA

SwissProt top hitse value%identityAlignment
Q0DBU5 DEAD-box ATP-dependent RNA helicase 317.7e-1974.55Show/hide
Query:  RKDIERIIATVPKQRQTLLFSATIPEEVRQICHIALRRDHEFVNTIQEGSEESHA
        R DIERI+A +PKQRQTLLFSAT+P+EVRQ+CHIA++RD EFVNT++EGSEE+H+
Subjt:  RKDIERIIATVPKQRQTLLFSATIPEEVRQICHIALRRDHEFVNTIQEGSEESHA

Q5ZBH5 DEAD-box ATP-dependent RNA helicase 253.2e-1769.09Show/hide
Query:  RKDIERIIATVPKQRQTLLFSATIPEEVRQICHIALRRDHEFVNTIQEGSEESHA
        R+DIERIIA+VPK+RQTLLFSAT+PEEVRQI HIA++++++F+NT+++G EE+HA
Subjt:  RKDIERIIATVPKQRQTLLFSATIPEEVRQICHIALRRDHEFVNTIQEGSEESHA

Q94C75 DEAD-box ATP-dependent RNA helicase 251.1e-1774.07Show/hide
Query:  RKDIERIIATVPKQRQTLLFSATIPEEVRQICHIALRRDHEFVNTIQEGSEESH
        R++IERIIA VPKQRQT LFSAT+ +EVRQICH+AL+RDHEFVN +QEG+ E+H
Subjt:  RKDIERIIATVPKQRQTLLFSATIPEEVRQICHIALRRDHEFVNTIQEGSEESH

Q9FFQ1 DEAD-box ATP-dependent RNA helicase 311.9e-1775.93Show/hide
Query:  RKDIERIIATVPKQRQTLLFSATIPEEVRQICHIALRRDHEFVNTIQEGSEESH
        RKDIERII+ VPK+RQT LFSAT+PEEVRQIC +ALRRDHEFVN + EG+ E+H
Subjt:  RKDIERIIATVPKQRQTLLFSATIPEEVRQICHIALRRDHEFVNTIQEGSEESH

Q9FNM7 DEAD-box ATP-dependent RNA helicase 261.2e-1979.63Show/hide
Query:  RKDIERIIATVPKQRQTLLFSATIPEEVRQICHIALRRDHEFVNTIQEGSEESH
        R+DIERIIA VPKQRQT LFSAT+PEEVRQICH+AL+RDHEF+N +QEGS E+H
Subjt:  RKDIERIIATVPKQRQTLLFSATIPEEVRQICHIALRRDHEFVNTIQEGSEESH

Arabidopsis top hitse value%identityAlignment
AT1G63250.1 DEA(D/H)-box RNA helicase family protein3.2e-1253.7Show/hide
Query:  RKDIERIIATVPKQRQTLLFSATIPEEVRQICHIALRRDHEFVNTIQEGSEESH
        R+D+E+II  +P+QRQ+LLFSATIP+EVR++  + L+RDH +++TI  G  E+H
Subjt:  RKDIERIIATVPKQRQTLLFSATIPEEVRQICHIALRRDHEFVNTIQEGSEESH

AT2G07750.1 DEA(D/H)-box RNA helicase family protein7.1e-1251.85Show/hide
Query:  RKDIERIIATVPKQRQTLLFSATIPEEVRQICHIALRRDHEFVNTIQEGSEESH
        ++D+E+II  +P+QRQ+LLFSATIP+EVR++  + L+RDH +++TI  G  E+H
Subjt:  RKDIERIIATVPKQRQTLLFSATIPEEVRQICHIALRRDHEFVNTIQEGSEESH

AT5G08610.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein8.4e-2179.63Show/hide
Query:  RKDIERIIATVPKQRQTLLFSATIPEEVRQICHIALRRDHEFVNTIQEGSEESH
        R+DIERIIA VPKQRQT LFSAT+PEEVRQICH+AL+RDHEF+N +QEGS E+H
Subjt:  RKDIERIIATVPKQRQTLLFSATIPEEVRQICHIALRRDHEFVNTIQEGSEESH

AT5G08620.1 DEA(D/H)-box RNA helicase family protein7.9e-1974.07Show/hide
Query:  RKDIERIIATVPKQRQTLLFSATIPEEVRQICHIALRRDHEFVNTIQEGSEESH
        R++IERIIA VPKQRQT LFSAT+ +EVRQICH+AL+RDHEFVN +QEG+ E+H
Subjt:  RKDIERIIATVPKQRQTLLFSATIPEEVRQICHIALRRDHEFVNTIQEGSEESH

AT5G63630.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein1.3e-1875.93Show/hide
Query:  RKDIERIIATVPKQRQTLLFSATIPEEVRQICHIALRRDHEFVNTIQEGSEESH
        RKDIERII+ VPK+RQT LFSAT+PEEVRQIC +ALRRDHEFVN + EG+ E+H
Subjt:  RKDIERIIATVPKQRQTLLFSATIPEEVRQICHIALRRDHEFVNTIQEGSEESH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATTCGCAAGGACATTGAGAGGATTATTGCTACAGTTCCAAAACAAAGGCAAACCCTTTTATTTTCTGCCACTATTCCAGAAGAGGTCCGCCAAATTTGTCACATTGCATT
GAGAAGAGATCATGAATTTGTCAATACAATTCAAGAAGGCAGTGAGGAGTCACATGCA
mRNA sequenceShow/hide mRNA sequence
ATTCGCAAGGACATTGAGAGGATTATTGCTACAGTTCCAAAACAAAGGCAAACCCTTTTATTTTCTGCCACTATTCCAGAAGAGGTCCGCCAAATTTGTCACATTGCATT
GAGAAGAGATCATGAATTTGTCAATACAATTCAAGAAGGCAGTGAGGAGTCACATGCA
Protein sequenceShow/hide protein sequence
IRKDIERIIATVPKQRQTLLFSATIPEEVRQICHIALRRDHEFVNTIQEGSEESHA