; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS008962 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS008962
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold399:168643..169176
RNA-Seq ExpressionMS008962
SyntenyMS008962
Gene Ontology termsGO:0009987 - cellular process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN65957.1 hypothetical protein VITISV_035610 [Vitis vinifera]4.7e-2739.63Show/hide
Query:  HLVNWNITSKSREGGGLGLGGLAQRNNALLAKWGWCFDLEMCSLWLMVVNSIYGSTSFGWSTAARPNLCHRCPWSSIFKQWNFVEHHSHFKVGSGDSVSF
        HLV+W++  KS+  GGLGLG ++ RN+ALL KW W +  E  +LW  V+ SIYGS S GW         HRCPW +I + +      + F VG GD + F
Subjt:  HLVNWNITSKSREGGGLGLGGLAQRNNALLAKWGWCFDLEMCSLWLMVVNSIYGSTSFGWSTAARPNLCHRCPWSSIFKQWNFVEHHSHFKVGSGDSVSF

Query:  WHHIWIGKEVLKVCFPKIFLLSPLQNAPVSPFWDSNSR-AWHIETRRSLKDDEFEEFSALLALL
        W  +W G + L V FP++  +   +N P+S    S    +W+   RR+L D E EE  +L+  L
Subjt:  WHHIWIGKEVLKVCFPKIFLLSPLQNAPVSPFWDSNSR-AWHIETRRSLKDDEFEEFSALLALL

RVW27524.1 putative ribonuclease H protein [Vitis vinifera]6.2e-2739.63Show/hide
Query:  HLVNWNITSKSREGGGLGLGGLAQRNNALLAKWGWCFDLEMCSLWLMVVNSIYGSTSFGWSTAARPNLCHRCPWSSIFKQWNFVEHHSHFKVGSGDSVSF
        HLV+W +  KS+  GGLGLG ++ RN+ALL KW W +  E  +LW  V+ SIYGS S GW         HRCPW +I + +      + F VG GD + F
Subjt:  HLVNWNITSKSREGGGLGLGGLAQRNNALLAKWGWCFDLEMCSLWLMVVNSIYGSTSFGWSTAARPNLCHRCPWSSIFKQWNFVEHHSHFKVGSGDSVSF

Query:  WHHIWIGKEVLKVCFPKIFLLSPLQNAPVSPFWDSNSR-AWHIETRRSLKDDEFEEFSALLALL
        W  +W G + L V FP++  +   +N P+S    S    +W+   RR+L D E EE  +L+  L
Subjt:  WHHIWIGKEVLKVCFPKIFLLSPLQNAPVSPFWDSNSR-AWHIETRRSLKDDEFEEFSALLALL

RVX12400.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]3.6e-2739.63Show/hide
Query:  HLVNWNITSKSREGGGLGLGGLAQRNNALLAKWGWCFDLEMCSLWLMVVNSIYGSTSFGWSTAARPNLCHRCPWSSIFKQWNFVEHHSHFKVGSGDSVSF
        HLV+W++  KS+  GGLGLG ++ RN+ALL KW W +  E  +LW  V+ SIYGS S GW         HRCPW +I + +      + F VG+GD + F
Subjt:  HLVNWNITSKSREGGGLGLGGLAQRNNALLAKWGWCFDLEMCSLWLMVVNSIYGSTSFGWSTAARPNLCHRCPWSSIFKQWNFVEHHSHFKVGSGDSVSF

Query:  WHHIWIGKEVLKVCFPKIFLLSPLQNAPVSPFWDSNSR-AWHIETRRSLKDDEFEEFSALLALL
        W  +W G + L V FP++  +   +N P+S    S    +W+   RR+L D E EE  +L+  L
Subjt:  WHHIWIGKEVLKVCFPKIFLLSPLQNAPVSPFWDSNSR-AWHIETRRSLKDDEFEEFSALLALL

RVX21544.1 putative ribonuclease H protein [Vitis vinifera]1.8e-2637.29Show/hide
Query:  HLVNWNITSKSREGGGLGLGGLAQRNNALLAKWGWCFDLEMCSLWLMVVNSIYGSTSFGWSTAARPNLCHRCPWSSIFKQWNFVEHHSHFKVGSGDSVSF
        HLV W    K R  GGLG+G +  RN ALL KW W F  E  SLW  V+ SIYG+ S GW    +    HRCPW +I + +     ++ F VG G+ + F
Subjt:  HLVNWNITSKSREGGGLGLGGLAQRNNALLAKWGWCFDLEMCSLWLMVVNSIYGSTSFGWSTAARPNLCHRCPWSSIFKQWNFVEHHSHFKVGSGDSVSF

Query:  WHHIWIGKEVLKVCFPKIFLLSPLQNAPVSPFWDSNSR-AWHIETRRSLKDDEFEEFSALL-ALLSLALVNEEADSR
        W  +W G ++LK  +P++F +   +N P+S    S+    W+   RR+L D E E+   L+ +L  + L    +D+R
Subjt:  WHHIWIGKEVLKVCFPKIFLLSPLQNAPVSPFWDSNSR-AWHIETRRSLKDDEFEEFSALL-ALLSLALVNEEADSR

TQD93576.1 hypothetical protein C1H46_020784 [Malus baccata]8.0e-2743.21Show/hide
Query:  HLVNWNITSKSREGGGLGLGGLAQRNNALLAKWGWCFDLEMCSLWLMVVNSIYGSTSFGWSTAARPNLCHRCPWSSIFKQWNFVEHHSHFKVGSGDSVSF
        HLV W I  KS+E GGLG+G L  RN ALLAKW W F  E  SLW  V+ S YG  + GW+         R PW  I        H   F+VG+G+ V F
Subjt:  HLVNWNITSKSREGGGLGLGGLAQRNNALLAKWGWCFDLEMCSLWLMVVNSIYGSTSFGWSTAARPNLCHRCPWSSIFKQWNFVEHHSHFKVGSGDSVSF

Query:  WHHIWIGKEVLKVCFPKIFLLSPLQNAPVSPFWD--SNSRAWHIETRRSLKDDEFEEFSALL
        W   W+    LK  FP++FLLS + N  +S F D  +NS +W+ + RR+L + E EE + LL
Subjt:  WHHIWIGKEVLKVCFPKIFLLSPLQNAPVSPFWD--SNSRAWHIETRRSLKDDEFEEFSALL

TrEMBL top hitse value%identityAlignment
A0A438CWE0 Putative ribonuclease H protein3.0e-2739.63Show/hide
Query:  HLVNWNITSKSREGGGLGLGGLAQRNNALLAKWGWCFDLEMCSLWLMVVNSIYGSTSFGWSTAARPNLCHRCPWSSIFKQWNFVEHHSHFKVGSGDSVSF
        HLV+W +  KS+  GGLGLG ++ RN+ALL KW W +  E  +LW  V+ SIYGS S GW         HRCPW +I + +      + F VG GD + F
Subjt:  HLVNWNITSKSREGGGLGLGGLAQRNNALLAKWGWCFDLEMCSLWLMVVNSIYGSTSFGWSTAARPNLCHRCPWSSIFKQWNFVEHHSHFKVGSGDSVSF

Query:  WHHIWIGKEVLKVCFPKIFLLSPLQNAPVSPFWDSNSR-AWHIETRRSLKDDEFEEFSALLALL
        W  +W G + L V FP++  +   +N P+S    S    +W+   RR+L D E EE  +L+  L
Subjt:  WHHIWIGKEVLKVCFPKIFLLSPLQNAPVSPFWDSNSR-AWHIETRRSLKDDEFEEFSALLALL

A0A438GPP0 Putative ribonuclease H protein8.7e-2739.63Show/hide
Query:  HLVNWNITSKSREGGGLGLGGLAQRNNALLAKWGWCFDLEMCSLWLMVVNSIYGSTSFGWSTAARPNLCHRCPWSSIFKQWNFVEHHSHFKVGSGDSVSF
        HLV+W +  KS+  GGLGLG ++ RN+ALL KW W +  E  +LW  V+ SIYGS S GW         HRCPW++I + +      + F VG GD + F
Subjt:  HLVNWNITSKSREGGGLGLGGLAQRNNALLAKWGWCFDLEMCSLWLMVVNSIYGSTSFGWSTAARPNLCHRCPWSSIFKQWNFVEHHSHFKVGSGDSVSF

Query:  WHHIWIGKEVLKVCFPKIFLLSPLQNAPVSPFWDSNSR-AWHIETRRSLKDDEFEEFSALLALL
        W  +W G + L V FP++      +N P+S    S    +W+   RR+L D E EE  +L+  L
Subjt:  WHHIWIGKEVLKVCFPKIFLLSPLQNAPVSPFWDSNSR-AWHIETRRSLKDDEFEEFSALLALL

A0A438JTV8 Transposon TX1 uncharacterized 149 kDa protein1.7e-2739.63Show/hide
Query:  HLVNWNITSKSREGGGLGLGGLAQRNNALLAKWGWCFDLEMCSLWLMVVNSIYGSTSFGWSTAARPNLCHRCPWSSIFKQWNFVEHHSHFKVGSGDSVSF
        HLV+W++  KS+  GGLGLG ++ RN+ALL KW W +  E  +LW  V+ SIYGS S GW         HRCPW +I + +      + F VG+GD + F
Subjt:  HLVNWNITSKSREGGGLGLGGLAQRNNALLAKWGWCFDLEMCSLWLMVVNSIYGSTSFGWSTAARPNLCHRCPWSSIFKQWNFVEHHSHFKVGSGDSVSF

Query:  WHHIWIGKEVLKVCFPKIFLLSPLQNAPVSPFWDSNSR-AWHIETRRSLKDDEFEEFSALLALL
        W  +W G + L V FP++  +   +N P+S    S    +W+   RR+L D E EE  +L+  L
Subjt:  WHHIWIGKEVLKVCFPKIFLLSPLQNAPVSPFWDSNSR-AWHIETRRSLKDDEFEEFSALLALL

A0A540M4H0 zf-RVT domain-containing protein3.9e-2743.21Show/hide
Query:  HLVNWNITSKSREGGGLGLGGLAQRNNALLAKWGWCFDLEMCSLWLMVVNSIYGSTSFGWSTAARPNLCHRCPWSSIFKQWNFVEHHSHFKVGSGDSVSF
        HLV W I  KS+E GGLG+G L  RN ALLAKW W F  E  SLW  V+ S YG  + GW+         R PW  I        H   F+VG+G+ V F
Subjt:  HLVNWNITSKSREGGGLGLGGLAQRNNALLAKWGWCFDLEMCSLWLMVVNSIYGSTSFGWSTAARPNLCHRCPWSSIFKQWNFVEHHSHFKVGSGDSVSF

Query:  WHHIWIGKEVLKVCFPKIFLLSPLQNAPVSPFWD--SNSRAWHIETRRSLKDDEFEEFSALL
        W   W+    LK  FP++FLLS + N  +S F D  +NS +W+ + RR+L + E EE + LL
Subjt:  WHHIWIGKEVLKVCFPKIFLLSPLQNAPVSPFWD--SNSRAWHIETRRSLKDDEFEEFSALL

A5BSZ3 Reverse transcriptase domain-containing protein2.3e-2739.63Show/hide
Query:  HLVNWNITSKSREGGGLGLGGLAQRNNALLAKWGWCFDLEMCSLWLMVVNSIYGSTSFGWSTAARPNLCHRCPWSSIFKQWNFVEHHSHFKVGSGDSVSF
        HLV+W++  KS+  GGLGLG ++ RN+ALL KW W +  E  +LW  V+ SIYGS S GW         HRCPW +I + +      + F VG GD + F
Subjt:  HLVNWNITSKSREGGGLGLGGLAQRNNALLAKWGWCFDLEMCSLWLMVVNSIYGSTSFGWSTAARPNLCHRCPWSSIFKQWNFVEHHSHFKVGSGDSVSF

Query:  WHHIWIGKEVLKVCFPKIFLLSPLQNAPVSPFWDSNSR-AWHIETRRSLKDDEFEEFSALLALL
        W  +W G + L V FP++  +   +N P+S    S    +W+   RR+L D E EE  +L+  L
Subjt:  WHHIWIGKEVLKVCFPKIFLLSPLQNAPVSPFWDSNSR-AWHIETRRSLKDDEFEEFSALLALL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCATCTAGTGAATTGGAATATCACTTCCAAGTCTCGTGAGGGCGGTGGCCTTGGACTCGGGGGTCTAGCTCAGAGGAACAATGCACTTTTGGCAAAGTGGGGTTG
GTGTTTCGACCTTGAAATGTGCTCTCTTTGGCTTATGGTGGTGAACAGTATTTATGGCTCCACTTCTTTTGGCTGGTCAACAGCCGCTCGTCCTAATCTTTGCCATCGTT
GTCCTTGGAGTAGCATTTTTAAGCAATGGAATTTTGTGGAACATCATTCACACTTCAAAGTTGGTAGTGGAGATAGTGTTTCCTTTTGGCACCACATTTGGATTGGCAAG
GAGGTTTTAAAGGTTTGTTTTCCTAAAATATTTTTGCTTTCTCCTCTTCAAAATGCCCCTGTCTCTCCATTTTGGGACTCCAATTCTCGTGCTTGGCATATTGAAACTAG
GAGATCCCTAAAAGATGATGAATTTGAAGAGTTTTCAGCGTTGCTAGCCCTACTTAGCTTGGCATTGGTTAATGAGGAAGCTGATAGTAGACAT
mRNA sequenceShow/hide mRNA sequence
ATGAAGCATCTAGTGAATTGGAATATCACTTCCAAGTCTCGTGAGGGCGGTGGCCTTGGACTCGGGGGTCTAGCTCAGAGGAACAATGCACTTTTGGCAAAGTGGGGTTG
GTGTTTCGACCTTGAAATGTGCTCTCTTTGGCTTATGGTGGTGAACAGTATTTATGGCTCCACTTCTTTTGGCTGGTCAACAGCCGCTCGTCCTAATCTTTGCCATCGTT
GTCCTTGGAGTAGCATTTTTAAGCAATGGAATTTTGTGGAACATCATTCACACTTCAAAGTTGGTAGTGGAGATAGTGTTTCCTTTTGGCACCACATTTGGATTGGCAAG
GAGGTTTTAAAGGTTTGTTTTCCTAAAATATTTTTGCTTTCTCCTCTTCAAAATGCCCCTGTCTCTCCATTTTGGGACTCCAATTCTCGTGCTTGGCATATTGAAACTAG
GAGATCCCTAAAAGATGATGAATTTGAAGAGTTTTCAGCGTTGCTAGCCCTACTTAGCTTGGCATTGGTTAATGAGGAAGCTGATAGTAGACAT
Protein sequenceShow/hide protein sequence
MKHLVNWNITSKSREGGGLGLGGLAQRNNALLAKWGWCFDLEMCSLWLMVVNSIYGSTSFGWSTAARPNLCHRCPWSSIFKQWNFVEHHSHFKVGSGDSVSFWHHIWIGK
EVLKVCFPKIFLLSPLQNAPVSPFWDSNSRAWHIETRRSLKDDEFEEFSALLALLSLALVNEEADSRH