; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS008964 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS008964
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzf-RVT domain-containing protein
Genome locationscaffold399:175112..175303
RNA-Seq ExpressionMS008964
SyntenyMS008964
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OMO52067.1 reverse transcriptase [Corchorus capsularis]5.1e-0846.67Show/hide
Query:  LWKRFWKTNVTPKIRIVCWKIVQDLLPLKTNLIIKGIKTDVLCVFCRNHEETVIHLFWEC
        LW+R W +++ PKIR   W+++ +LLPLK NL  +G+  D LCV C   EE+V H+F+ C
Subjt:  LWKRFWKTNVTPKIRIVCWKIVQDLLPLKTNLIIKGIKTDVLCVFCRNHEETVIHLFWEC
OMO88867.1 hypothetical protein COLO4_20039 [Corchorus olitorius]1.8e-0845Show/hide
Query:  LWKRFWKTNVTPKIRIVCWKIVQDLLPLKTNLIIKGIKTDVLCVFCRNHEETVIHLFWEC
        LW R W  +V PK+R   W+++ +LLPLKTNL  +G++ D +CV C +H E + H+F+ C
Subjt:  LWKRFWKTNVTPKIRIVCWKIVQDLLPLKTNLIIKGIKTDVLCVFCRNHEETVIHLFWEC
XP_021749452.1 uncharacterized protein LOC110715189 [Chenopodium quinoa]1.8e-0842.37Show/hide
Query:  WKRFWKTNVTPKIRIVCWKIVQDLLPLKTNLIIKGIKTDVLCVFCRNHEETVIHLFWEC
        WKR W T + PK ++  WK++ + LP+   L+ KG+  D +C+FCR + E++I LFW+C
Subjt:  WKRFWKTNVTPKIRIVCWKIVQDLLPLKTNLIIKGIKTDVLCVFCRNHEETVIHLFWEC
XP_024155813.1 uncharacterized protein LOC112163786 [Rosa chinensis]2.3e-0839.68Show/hide
Query:  WKRFWKTNVTPKIRIVCWKIVQDLLPLKTNLIIKGIKTDVLCVFCRNHEETVIHLFWECKVPR
        WK+FWK  V  K+++  WK  QD LP ++NL+ K ++ ++ C  C N EET +H+F  C + +
Subjt:  WKRFWKTNVTPKIRIVCWKIVQDLLPLKTNLIIKGIKTDVLCVFCRNHEETVIHLFWECKVPR
XP_030970671.1 uncharacterized protein LOC115991063 [Quercus lobata]1.8e-0841.27Show/hide
Query:  WKRFWKTNVTPKIRIVCWKIVQDLLPLKTNLIIKGIKTDVLCVFCRNHEETVIHLFWECKVPR
        W + WK  + PK+R   W+   D+LP   NL  + I  D  C  CR H+ETV H+ WEC + R
Subjt:  WKRFWKTNVTPKIRIVCWKIVQDLLPLKTNLIIKGIKTDVLCVFCRNHEETVIHLFWECKVPR
TrEMBL top hitse value%identityAlignment
A0A1R3J206 zf-RVT domain-containing protein8.5e-0945Show/hide
Query:  LWKRFWKTNVTPKIRIVCWKIVQDLLPLKTNLIIKGIKTDVLCVFCRNHEETVIHLFWEC
        LW R W  +V PK+R   W+++ +LLPLKTNL  +G++ D +CV C +H E + H+F+ C
Subjt:  LWKRFWKTNVTPKIRIVCWKIVQDLLPLKTNLIIKGIKTDVLCVFCRNHEETVIHLFWEC
A0A2K3L4A8 Ribonuclease H (Fragment)2.5e-0844.26Show/hide
Query:  LWKRFWKTNVTPKIRIVCWKIVQDLLPLKTNLIIKGIKTDVLCVFCRNHEETVIHLFWECK
        +WK  WK  V PK   + W+I+ + +P+K NL  KG+K D LC  C NH E++ H+F EC+
Subjt:  LWKRFWKTNVTPKIRIVCWKIVQDLLPLKTNLIIKGIKTDVLCVFCRNHEETVIHLFWECK
A0A7N2KKX2 zf-RVT domain-containing protein6.5e-0939.06Show/hide
Query:  LWKRFWKTNVTPKIRIVCWKIVQDLLPLKTNLIIKGIKTDVLCVFCRNHEETVIHLFWECKVPR
        +WK FW  N  PK+R   W+   D+LP + NL+ + I+ D  C  C  H+ET  H+ W+C   R
Subjt:  LWKRFWKTNVTPKIRIVCWKIVQDLLPLKTNLIIKGIKTDVLCVFCRNHEETVIHLFWECKVPR
A0A7N2LVY0 zf-RVT domain-containing protein1.1e-0843.75Show/hide
Query:  LWKRFWKTNVTPKIRIVCWKIVQDLLPLKTNLIIKGIKTDVLCVFCRNHEETVIHLFWECKVPR
        LWK  W   V PKIR   W+ V + LP + NL  +G+  +  C FCR H ET  H+ WEC   R
Subjt:  LWKRFWKTNVTPKIRIVCWKIVQDLLPLKTNLIIKGIKTDVLCVFCRNHEETVIHLFWECKVPR
A0A7N2MHA8 zf-RVT domain-containing protein1.5e-0840Show/hide
Query:  LWKRFWKTNVTPKIRIVCWKIVQDLLPLKTNLIIKGIKTDVLCVFCRNHEETVIHLFWEC
        +WK FW  N  PK+R   W+   D+LP + NL+ + I+ D  C  C  H+ET  H+ W+C
Subjt:  LWKRFWKTNVTPKIRIVCWKIVQDLLPLKTNLIIKGIKTDVLCVFCRNHEETVIHLFWEC
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G02520.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.9e-0533.33Show/hide
Query:  WKRFWKTNVTPKIRIVCWKIVQDLLPLKTNLIIKGIKTDVLCVFCRNHEETVIHLFWECKVPR
        +K  W     PK   + W  ++  L  K  +I  G     LC+FC  H+ET  HLF++C+  R
Subjt:  WKRFWKTNVTPKIRIVCWKIVQDLLPLKTNLIIKGIKTDVLCVFCRNHEETVIHLFWECKVPR
AT3G25270.1 Ribonuclease H-like superfamily protein2.1e-0433.33Show/hide
Query:  RFWKTNVTPKIRIVCWKIVQDLLPLKTNLIIKGIKTDVLCVFCRNHEETVIHLFWEC
        + WK    PKI+   WK++   L    NL  + I+    C  C   +ET  HLF++C
Subjt:  RFWKTNVTPKIRIVCWKIVQDLLPLKTNLIIKGIKTDVLCVFCRNHEETVIHLFWEC
AT3G26855.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein8.7e-0630.91Show/hide
Query:  WKTNVTPKIRIVCWKIVQDLLPLKTNLIIKGIKTDVLCVFCRNHEETVIHLFWEC
        W   ++PKI+++ WK + + LP+   L+ + I  +  C  CR+  ET+ H+ + C
Subjt:  WKTNVTPKIRIVCWKIVQDLLPLKTNLIIKGIKTDVLCVFCRNHEETVIHLFWEC

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTTTGGAAGCGATTCTGGAAGACAAACGTAACCCCTAAAATAAGGATAGTTTGTTGGAAAATAGTACAAGATCTTCTCCCTCTTAAAACCAATTTGATTATTAAGGGAAT
TAAAACTGATGTGCTTTGTGTTTTTTGCAGAAATCATGAAGAGACTGTGATTCACTTATTTTGGGAGTGCAAGGTACCAAGA
mRNA sequenceShow/hide mRNA sequence
CTTTGGAAGCGATTCTGGAAGACAAACGTAACCCCTAAAATAAGGATAGTTTGTTGGAAAATAGTACAAGATCTTCTCCCTCTTAAAACCAATTTGATTATTAAGGGAAT
TAAAACTGATGTGCTTTGTGTTTTTTGCAGAAATCATGAAGAGACTGTGATTCACTTATTTTGGGAGTGCAAGGTACCAAGA
Protein sequenceShow/hide protein sequence
LWKRFWKTNVTPKIRIVCWKIVQDLLPLKTNLIIKGIKTDVLCVFCRNHEETVIHLFWECKVPR