CuGenDBv2

Gene ID	MS008966
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Ribulose bisphosphate carboxylase large chain
Genome location	scaffold399:213394..213722
RNA-Seq Expression	MS008966
Synteny	MS008966
Gene Ontology terms	GO:0009767 - photosynthetic electron transport chain (biological process) GO:0009853 - photorespiration (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0019253 - reductive pentose-phosphate cycle (biological process) GO:0009507 - chloroplast (cellular component) GO:0009521 - photosystem (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0004497 - monooxygenase activity (molecular function) GO:0016168 - chlorophyll binding (molecular function) GO:0016984 - ribulose-bisphosphate carboxylase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG4109387.1 hypothetical protein ERO13_1Z050202v2, partial [Gossypium hirsutum]

4.4e-28

83.95

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Query:  RNQSDYIDIPSTQYRSLKGSRRPTKARKPESFRKWIPIRRVHNRMDKLTLTRQFWIQFGI-LGGIGKELECNNINSYRYRR
        RN+SD+IDIPSTQ+RS KGSRR TKAR P SFRKWIPIRRVHNRMDKLTLTRQF IQFGI LGGI KELECNNI+SYR +R
Subjt:  RNQSDYIDIPSTQYRSLKGSRRPTKARKPESFRKWIPIRRVHNRMDKLTLTRQFWIQFGI-LGGIGKELECNNINSYRYRR

PPR83387.1 hypothetical protein GOBAR_AA37329 [Gossypium barbadense]

3.6e-30

86.42

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Query:  RNQSDYIDIPSTQYRSLKGSRRPTKARKPESFRKWIPIRRVHNRMDKLTLTRQFWIQFGI-LGGIGKELECNNINSYRYRR
        RN+SD+IDIPSTQ+RS KGSRR TKARKP SFRKWIPIRRVHNRMDKLTLTRQFWIQFGI LGGI KELECNNI+SYR +R
Subjt:  RNQSDYIDIPSTQYRSLKGSRRPTKARKPESFRKWIPIRRVHNRMDKLTLTRQFWIQFGI-LGGIGKELECNNINSYRYRR

TYG79516.1 hypothetical protein ES288_D02G144500v1, partial [Gossypium darwinii]

9.8e-28

83.95

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Query:  RNQSDYIDIPSTQYRSLKGSRRPTKARKPESFRKWIPIRRVHNRMDKLTLTRQFWIQFGI-LGGIGKELECNNINSYRYRR
        RN+SD+IDIPSTQ+RS KGSRR TKARKP SFRKWIPIRRVHNRMDKLTLTRQF IQF I LGGI KELECNNI+SYR +R
Subjt:  RNQSDYIDIPSTQYRSLKGSRRPTKARKPESFRKWIPIRRVHNRMDKLTLTRQFWIQFGI-LGGIGKELECNNINSYRYRR

TYI03364.1 hypothetical protein ES332_A11G333500v1 [Gossypium tomentosum]

1.5e-28

85.19

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Query:  RNQSDYIDIPSTQYRSLKGSRRPTKARKPESFRKWIPIRRVHNRMDKLTLTRQFWIQFGI-LGGIGKELECNNINSYRYRR
        RN+SD+IDIPSTQ+RS KGSRR TKARKP SFRKWIPIRRVHNRMDKLTLTRQF IQFGI LGGI KELECNNI+SYR +R
Subjt:  RNQSDYIDIPSTQYRSLKGSRRPTKARKPESFRKWIPIRRVHNRMDKLTLTRQFWIQFGI-LGGIGKELECNNINSYRYRR

TYJ12281.1 hypothetical protein E1A91_A11G338200v1, partial [Gossypium mustelinum]

3.1e-29

86.42

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Query:  RNQSDYIDIPSTQYRSLKGSRRPTKARKPESFRKWIPIRRVHNRMDKLTLTRQFWIQFGI-LGGIGKELECNNINSYRYRR
        RN+SDYIDIPSTQ+RS KGSRR TKARKP SFRKWIPIRRVHNRMDKLTLTRQF IQFGI LGGI KELECNNI+SYR +R
Subjt:  RNQSDYIDIPSTQYRSLKGSRRPTKARKPESFRKWIPIRRVHNRMDKLTLTRQFWIQFGI-LGGIGKELECNNINSYRYRR

TrEMBL top hits

e value

%identity

Alignment

A0A2P5VX61 Uncharacterized protein

1.7e-30

86.42

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Query:  RNQSDYIDIPSTQYRSLKGSRRPTKARKPESFRKWIPIRRVHNRMDKLTLTRQFWIQFGI-LGGIGKELECNNINSYRYRR
        RN+SD+IDIPSTQ+RS KGSRR TKARKP SFRKWIPIRRVHNRMDKLTLTRQFWIQFGI LGGI KELECNNI+SYR +R
Subjt:  RNQSDYIDIPSTQYRSLKGSRRPTKARKPESFRKWIPIRRVHNRMDKLTLTRQFWIQFGI-LGGIGKELECNNINSYRYRR

A0A5D2DGW6 Uncharacterized protein (Fragment)

4.8e-28

83.95

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Query:  RNQSDYIDIPSTQYRSLKGSRRPTKARKPESFRKWIPIRRVHNRMDKLTLTRQFWIQFGI-LGGIGKELECNNINSYRYRR
        RN+SD+IDIPSTQ+RS KGSRR TKARKP SFRKWIPIRRVHNRMDKLTLTRQF IQF I LGGI KELECNNI+SYR +R
Subjt:  RNQSDYIDIPSTQYRSLKGSRRPTKARKPESFRKWIPIRRVHNRMDKLTLTRQFWIQFGI-LGGIGKELECNNINSYRYRR

A0A5D2NJX8 Uncharacterized protein

7.3e-29

85.19

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Query:  RNQSDYIDIPSTQYRSLKGSRRPTKARKPESFRKWIPIRRVHNRMDKLTLTRQFWIQFGI-LGGIGKELECNNINSYRYRR
        RN+SD+IDIPSTQ+RS KGSRR TKARKP SFRKWIPIRRVHNRMDKLTLTRQF IQFGI LGGI KELECNNI+SYR +R
Subjt:  RNQSDYIDIPSTQYRSLKGSRRPTKARKPESFRKWIPIRRVHNRMDKLTLTRQFWIQFGI-LGGIGKELECNNINSYRYRR

A0A5D2P344 Uncharacterized protein (Fragment)

1.4e-27

82.72

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Query:  RNQSDYIDIPSTQYRSLKGSRRPTKARKPESFRKWIPIRRVHNRMDKLTLTRQFWIQFGI-LGGIGKELECNNINSYRYRR
        RN+SD+IDIPSTQ+RS KGSRR TKARKP SFRKWIPIRRVHNRMDKLTLTRQF IQFGI L GI KE ECNNI+SYR +R
Subjt:  RNQSDYIDIPSTQYRSLKGSRRPTKARKPESFRKWIPIRRVHNRMDKLTLTRQFWIQFGI-LGGIGKELECNNINSYRYRR

A0A5D2XHD7 Uncharacterized protein (Fragment)

1.5e-29

86.42

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Query:  RNQSDYIDIPSTQYRSLKGSRRPTKARKPESFRKWIPIRRVHNRMDKLTLTRQFWIQFGI-LGGIGKELECNNINSYRYRR
        RN+SDYIDIPSTQ+RS KGSRR TKARKP SFRKWIPIRRVHNRMDKLTLTRQF IQFGI LGGI KELECNNI+SYR +R
Subjt:  RNQSDYIDIPSTQYRSLKGSRRPTKARKPESFRKWIPIRRVHNRMDKLTLTRQFWIQFGI-LGGIGKELECNNINSYRYRR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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CGCAATCAATCGGATTATATAGATATCCCTTCAACACAATATAGGTCATTGAAAGGATCTCGGAGACCCACCAAAGCACGAAAGCCAGAATCTTTCCGAAAATGGATTCC
TATTCGAAGAGTGCATAACCGCATGGATAAGCTCACACTAACCCGTCAATTTTGGATCCAATTTGGAATTTTAGGAGGTATCGGGAAGGAATTGGAATGTAATAATATCA
ATTCATACAGATACAGAAGAAAAGGTTCTCTATTGATTCAAACATTGTACCCGCGGGATAGAAAAATGAGATTTCACATAGTACTTTTGATCGAAAAATCAATC

mRNA sequence

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Protein sequence

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RNQSDYIDIPSTQYRSLKGSRRPTKARKPESFRKWIPIRRVHNRMDKLTLTRQFWIQFGILGGIGKELECNNINSYRYRRKGSLLIQTLYPRDRKMRFHIVLLIEKSI

MS008966 (gene) of Bitter gourd (TR) v1 genome